Wall clock time and date at job start Tue Mar 31 2020 23:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.47550 * 240.27732 * 3 2 1 5 5 O 1.42896 * 109.47289 * 0.27807 * 3 2 1 6 6 C 1.53010 * 109.46881 * 120.27744 * 3 2 1 7 7 C 1.50701 * 109.46881 * 180.02562 * 6 3 2 8 8 O 1.21275 * 120.00114 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99751 * 179.97438 * 7 6 3 10 10 C 1.46934 * 120.63021 * 0.02562 * 9 7 6 11 11 C 1.53189 * 108.77512 * 126.36341 * 10 9 7 12 12 C 1.53038 * 109.31455 * 54.63592 * 11 10 9 13 13 C 1.53044 * 109.53409 * 298.63321 * 12 11 10 14 14 H 1.08993 * 109.50097 * 301.37582 * 13 12 11 15 15 N 1.46901 * 109.49474 * 181.31496 * 13 12 11 16 16 C 1.46903 * 111.00197 * 84.99950 * 15 13 12 17 17 C 1.50697 * 109.47537 * 180.02562 * 16 15 13 18 18 O 1.21296 * 119.99892 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00260 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00329 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99785 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00308 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99775 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99968 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47327 * 59.99527 * 24 22 20 26 26 H 1.48501 * 109.46889 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46906 * 299.99501 * 24 22 20 28 28 C 1.46919 * 120.63122 * 179.72259 * 9 7 6 29 29 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 30 30 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 31 31 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 32 32 H 1.08995 * 109.46922 * 59.99527 * 4 3 2 33 33 H 1.09000 * 109.47377 * 180.02562 * 4 3 2 34 34 H 1.09008 * 109.46583 * 299.99972 * 4 3 2 35 35 H 0.96703 * 114.00176 * 59.99804 * 5 3 2 36 36 H 1.09004 * 109.46811 * 299.99835 * 6 3 2 37 37 H 1.08996 * 109.46879 * 59.99757 * 6 3 2 38 38 H 1.08998 * 109.58336 * 246.15124 * 10 9 7 39 39 H 1.09001 * 109.58431 * 6.43244 * 10 9 7 40 40 H 1.08997 * 109.49579 * 174.58548 * 11 10 9 41 41 H 1.09001 * 109.49947 * 294.64788 * 11 10 9 42 42 H 1.08997 * 109.45952 * 58.64791 * 12 11 10 43 43 H 1.08994 * 109.46523 * 178.61178 * 12 11 10 44 44 H 1.00902 * 111.00097 * 208.95715 * 15 13 12 45 45 H 1.08995 * 109.46890 * 300.00451 * 16 15 13 46 46 H 1.09004 * 109.46789 * 59.99783 * 16 15 13 47 47 H 0.96998 * 120.00224 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00305 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.58802 * 353.41620 * 28 9 7 50 50 H 1.08993 * 109.58961 * 113.84637 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9378 1.3893 -1.2527 5 8 1.1348 2.3912 0.0065 6 6 2.9483 1.3831 1.2458 7 6 3.7013 2.6885 1.2462 8 8 3.5452 3.4788 0.3396 9 7 4.5474 2.9781 2.2545 10 6 4.7465 2.0310 3.3601 11 6 6.2458 1.7527 3.5068 12 6 6.9928 3.0780 3.6724 13 6 6.7818 3.9433 2.4278 14 1 7.1408 3.4092 1.5481 15 7 7.5248 5.2021 2.5741 16 6 8.9215 5.0416 2.1482 17 6 9.6506 6.3501 2.3129 18 8 9.0642 7.3212 2.7424 19 7 10.9538 6.4418 1.9820 20 6 11.6172 7.6321 2.1323 21 1 11.0953 8.4966 2.5155 22 6 12.9610 7.7265 1.7916 23 7 13.5961 6.6746 1.3258 24 14 13.8650 9.3482 1.9971 25 1 13.8268 9.7589 3.4236 26 1 15.2770 9.1857 1.5668 27 1 13.2099 10.3889 1.1646 28 6 5.2931 4.2440 2.2658 29 1 -0.5401 0.9353 0.0045 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0046 32 1 2.3075 1.3337 -2.1401 33 1 3.4831 2.3331 -1.2524 34 1 3.6462 0.5608 -1.2576 35 1 0.5467 2.4013 0.7741 36 1 2.3253 1.3232 2.1383 37 1 3.6565 0.5546 1.2408 38 1 4.3628 2.4626 4.2845 39 1 4.2195 1.1016 3.1443 40 1 6.4156 1.1274 4.3833 41 1 6.6091 1.2383 2.6171 42 1 6.6116 3.6028 4.5483 43 1 8.0571 2.8814 3.8017 44 1 7.0752 5.9486 2.0656 45 1 9.4025 4.2786 2.7601 46 1 8.9496 4.7388 1.1014 47 1 11.4227 5.6654 1.6381 48 1 14.5343 6.7403 1.0883 49 1 5.1289 4.7732 1.3271 50 1 4.9549 4.8599 3.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207951726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:37 Heat of formation + Delta-G solvation = -122.544927 kcal Electronic energy + Delta-G solvation = -29716.831159 eV Core-core repulsion = 25550.440521 eV Total energy + Delta-G solvation = -4166.390638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.52889 -40.27669 -39.53096 -38.27937 -36.38816 -35.77737 -33.96928 -33.34352 -33.18239 -32.37860 -31.21225 -29.09683 -27.85283 -26.37755 -25.62675 -23.62700 -23.49247 -21.44382 -21.16177 -20.57176 -20.02763 -19.80532 -18.32939 -17.87077 -17.77743 -17.03724 -16.76353 -16.55427 -16.41553 -16.21977 -15.89768 -15.55976 -15.48304 -15.33827 -15.09108 -14.75514 -14.39824 -14.09400 -13.88027 -13.77343 -13.56208 -13.41066 -13.29109 -13.18377 -13.10408 -12.90416 -12.64604 -12.47757 -12.44942 -12.36395 -12.13379 -12.00751 -11.83159 -11.77664 -11.62494 -11.51929 -11.09574 -10.55795 -10.38077 -10.30782 -10.04057 -9.66711 -9.40941 -8.48189 -5.97345 1.33117 1.38924 1.40852 1.51991 1.66975 1.93679 2.02146 2.28603 2.90522 3.18522 3.31200 3.42698 3.54452 3.73988 3.78513 3.89925 4.04252 4.06038 4.10659 4.16921 4.25785 4.28558 4.41661 4.43086 4.51299 4.52311 4.59324 4.69336 4.70694 4.80125 4.81764 4.86988 4.94208 5.00122 5.10202 5.16715 5.21312 5.32004 5.38774 5.41682 5.51377 5.68911 5.84021 5.86064 6.05896 6.28362 6.45613 6.57579 6.88372 7.10196 7.25445 7.53069 8.08349 8.68933 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.001864 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.766828 B =15014.219580 C =15388.139220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.188 4.188 3 C 0.172 3.828 4 C -0.150 4.150 5 O -0.565 6.565 6 C -0.154 4.154 7 C 0.507 3.493 8 O -0.566 6.566 9 N -0.610 5.610 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.081 3.919 14 H 0.041 0.959 15 N -0.672 5.672 16 C 0.069 3.931 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.571 5.571 20 C -0.337 4.337 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.118 3.882 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.380 0.620 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.342 0.658 45 H 0.106 0.894 46 H 0.060 0.940 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.065 0.935 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.652 -22.599 2.594 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.206 4.206 3 C 0.131 3.869 4 C -0.207 4.207 5 O -0.372 6.372 6 C -0.193 4.193 7 C 0.297 3.703 8 O -0.445 6.445 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.029 4.029 14 H 0.059 0.941 15 N -0.305 5.305 16 C -0.064 4.064 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.006 4.006 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.229 0.771 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.161 0.839 45 H 0.124 0.876 46 H 0.078 0.922 47 H 0.230 0.770 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.483 -21.533 2.441 31.227 hybrid contribution 0.708 0.689 -0.738 1.233 sum -21.775 -20.844 1.703 30.191 Atomic orbital electron populations 1.24029 0.96087 1.02962 0.98488 1.23556 0.96796 0.98151 1.02145 1.19929 0.87975 0.84732 0.94242 1.21933 0.99265 1.03302 0.96170 1.86719 1.50977 1.49955 1.49532 1.22450 1.00544 0.95131 1.01188 1.21206 0.79191 0.89339 0.80572 1.90697 1.65412 1.51611 1.36729 1.48213 1.42676 1.19389 1.24086 1.22098 0.97161 0.93518 0.89213 1.21920 0.94312 0.96494 1.03862 1.21558 1.00980 0.95490 0.96680 1.21795 0.92441 0.90260 0.98426 0.94118 1.60160 1.00930 1.06917 1.62467 1.21543 0.90068 0.94645 1.00114 1.20809 0.82727 0.91186 0.82815 1.90493 1.67939 1.40893 1.51578 1.41912 1.08962 1.12513 1.57475 1.19649 0.93699 0.90489 1.42785 0.90301 1.26058 0.96832 1.02360 0.95976 1.69665 1.11906 1.30834 1.43597 0.84972 0.77174 0.77251 0.78831 1.19626 1.19355 1.19802 1.21341 0.90282 0.86621 1.02403 0.88234 0.86671 0.84719 0.93127 0.92141 0.89844 0.77098 0.85824 0.85222 0.90022 0.86445 0.87753 0.91452 0.91401 0.92109 0.83893 0.87583 0.92227 0.76974 0.91232 0.91631 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 13.93 67.79 0.94 -0.64 16 2 C -0.19 -1.78 8.77 25.65 0.23 -1.56 16 3 C 0.17 2.53 0.94 -11.54 -0.01 2.52 16 4 C -0.15 -2.87 8.50 71.98 0.61 -2.26 16 5 O -0.56 -10.93 10.84 -131.50 -1.43 -12.36 16 6 C -0.15 -1.64 3.28 29.85 0.10 -1.54 16 7 C 0.51 10.31 7.26 87.66 0.64 10.95 16 8 O -0.57 -17.31 12.37 14.46 0.18 -17.13 16 9 N -0.61 -10.98 2.98 -819.80 -2.44 -13.42 16 10 C 0.10 0.98 6.35 86.36 0.55 1.53 16 11 C -0.13 -1.43 6.08 30.67 0.19 -1.24 16 12 C -0.11 -2.11 5.40 30.62 0.17 -1.94 16 13 C 0.08 1.99 2.63 44.84 0.12 2.11 16 14 H 0.04 1.04 7.80 -2.39 -0.02 1.03 16 15 N -0.67 -22.05 5.94 -495.96 -2.94 -24.99 16 16 C 0.07 2.45 5.97 85.56 0.51 2.96 16 17 C 0.44 21.38 7.82 87.66 0.69 22.07 16 18 O -0.62 -35.39 15.78 -3.08 -0.05 -35.44 16 19 N -0.57 -29.96 5.29 -306.99 -1.62 -31.58 16 20 C -0.34 -19.47 9.68 84.04 0.81 -18.65 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 24 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 C 0.12 2.82 5.67 86.21 0.49 3.31 16 29 H 0.10 0.98 6.41 -2.91 -0.02 0.96 16 30 H 0.12 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.14 0.77 8.06 -2.91 -0.02 0.74 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.61 5.51 -2.39 -0.01 1.60 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.38 4.47 8.06 -74.06 -0.60 3.87 16 36 H 0.12 0.64 7.94 -2.38 -0.02 0.62 16 37 H 0.13 0.70 7.69 -2.39 -0.02 0.68 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.36 5.93 -2.39 -0.01 0.35 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.28 7.43 -2.39 -0.02 1.26 16 44 H 0.34 12.19 8.06 -89.69 -0.72 11.47 16 45 H 0.11 3.36 7.42 -2.39 -0.02 3.35 16 46 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 47 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.07 1.92 7.01 -2.39 -0.02 1.91 16 50 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.59 398.68 -0.59 -79.17 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -1.08 Total: 42.63 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.49 Total: 17.40 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.73 Total: -119.75 kcal Atomic # 8 Polarization: -63.63 SS G_CDS: -1.29 Total: -64.92 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -78.59 -0.59 -79.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207951726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.372 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds