Wall clock time and date at job start Tue Mar 31 2020 22:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00159 * 2 1 4 4 C 1.53003 * 109.47347 * 124.99435 * 3 2 1 5 5 O 1.42896 * 109.47142 * 179.97438 * 4 3 2 6 6 C 1.42900 * 114.00101 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47322 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00127 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99892 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 14 14 H 1.08998 * 109.52927 * 301.40610 * 13 12 11 15 15 N 1.46907 * 109.49940 * 181.32379 * 13 12 11 16 16 C 1.46903 * 110.99921 * 155.16330 * 15 13 12 17 17 C 1.50697 * 109.46985 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00178 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99916 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99772 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99936 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99721 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00150 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99730 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47511 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47154 * 120.00504 * 24 22 20 27 27 H 1.48507 * 109.46966 * 239.99933 * 24 22 20 28 28 C 1.46933 * 120.62741 * 180.02562 * 9 7 6 29 29 H 1.08005 * 120.00103 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00277 * 0.02562 * 1 2 3 31 31 H 1.08008 * 119.99798 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46839 * 4.99569 * 3 2 1 33 33 H 1.08998 * 109.47428 * 244.99730 * 3 2 1 34 34 H 1.08999 * 109.46733 * 60.00277 * 4 3 2 35 35 H 1.08998 * 109.47098 * 300.00498 * 4 3 2 36 36 H 1.09004 * 109.46626 * 60.00596 * 6 5 4 37 37 H 1.08995 * 109.47333 * 300.00919 * 6 5 4 38 38 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 39 39 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 40 40 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 41 41 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 42 42 H 1.08999 * 109.41979 * 178.67448 * 12 11 10 43 43 H 1.09000 * 109.43268 * 58.76205 * 12 11 10 44 44 H 1.00900 * 110.99854 * 279.11870 * 15 13 12 45 45 H 1.09003 * 109.46843 * 299.99957 * 16 15 13 46 46 H 1.08997 * 109.46844 * 60.00056 * 16 15 13 47 47 H 0.96997 * 119.99868 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00398 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.58580 * 353.38021 * 28 9 7 50 50 H 1.09006 * 109.57831 * 113.65514 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7499 2.5704 1.1813 6 6 4.6885 2.6997 2.2510 7 6 5.3806 4.0348 2.1535 8 8 5.0976 4.8004 1.2565 9 7 6.3141 4.3779 3.0631 10 6 6.6681 3.4609 4.1550 11 6 8.1848 3.2451 4.1495 12 6 8.8869 4.6068 4.2157 13 6 8.5102 5.4391 2.9880 14 1 8.7983 4.9044 2.0829 15 7 9.2088 6.7305 3.0380 16 6 9.3668 7.2959 1.6914 17 6 10.0864 8.6169 1.7825 18 8 10.4339 9.0449 2.8629 19 7 10.3448 9.3221 0.6635 20 6 10.9990 10.5241 0.7465 21 1 11.3069 10.9060 1.7087 22 6 11.2649 11.2514 -0.4072 23 7 10.8889 10.7875 -1.5777 24 14 12.1557 12.8895 -0.2940 25 1 12.4672 13.1865 1.1272 26 1 13.4173 12.8218 -1.0743 27 1 11.2899 13.9628 -0.8452 28 6 6.9971 5.6763 2.9815 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 3.7399 0.5066 1.0922 35 1 2.4771 1.2356 2.1130 36 1 5.4276 1.9012 2.1843 37 1 4.1647 2.6311 3.2044 38 1 6.3640 3.8931 5.1083 39 1 6.1627 2.5063 4.0088 40 1 8.4697 2.6427 5.0120 41 1 8.4757 2.7304 3.2337 42 1 9.9664 4.4573 4.2358 43 1 8.5763 5.1313 5.1193 44 1 8.7308 7.3768 3.6478 45 1 9.9460 6.6088 1.0745 46 1 8.3848 7.4469 1.2432 47 1 10.0679 8.9793 -0.2006 48 1 11.0742 11.2954 -2.3831 49 1 6.7106 6.1825 2.0597 50 1 6.7178 6.2904 3.8376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211355110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:46 Heat of formation + Delta-G solvation = -96.945643 kcal Electronic energy + Delta-G solvation = -28841.682337 eV Core-core repulsion = 24676.401767 eV Total energy + Delta-G solvation = -4165.280570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.54666 -38.74066 -38.15204 -37.44187 -35.39632 -35.16300 -33.82857 -32.54943 -31.21582 -30.70881 -29.84045 -27.98167 -26.18856 -25.15582 -24.08975 -23.43052 -22.52809 -20.99303 -20.30032 -19.48220 -19.07437 -17.85314 -17.73063 -17.07210 -16.78911 -16.17413 -15.99952 -15.65529 -15.26859 -15.10349 -14.67118 -14.59884 -14.46948 -14.21954 -14.03898 -13.74628 -13.69584 -13.43713 -13.23855 -13.09357 -12.80455 -12.65290 -12.22571 -11.96677 -11.66934 -11.60648 -11.57752 -11.52940 -11.48860 -11.15602 -11.08463 -11.02624 -10.76054 -10.31737 -10.19386 -10.13258 -9.95183 -9.82901 -9.49108 -9.04443 -8.43091 -8.03213 -7.92740 -6.38325 -3.79302 1.75327 2.35366 2.40280 3.18945 3.29276 3.36540 3.40599 3.93663 4.05698 4.17287 4.27619 4.47465 4.53209 4.61531 4.62714 4.64462 4.71518 4.74802 4.80307 4.81436 4.88873 4.96076 5.03171 5.17314 5.20151 5.27668 5.36723 5.38567 5.49472 5.50422 5.57657 5.58558 5.64908 5.76039 5.84741 6.01214 6.08782 6.12502 6.14458 6.18212 6.26793 6.31631 6.64532 7.09416 7.19540 7.58469 7.61822 7.94400 8.09481 8.64277 9.20909 9.57667 10.08752 10.79431 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.001846 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.254942 B =15162.556346 C =16861.942277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.066 3.934 5 O -0.364 6.364 6 C 0.048 3.952 7 C 0.513 3.487 8 O -0.515 6.515 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.135 4.135 12 C -0.108 4.108 13 C 0.076 3.924 14 H 0.081 0.919 15 N -0.656 5.656 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.082 3.918 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.393 0.607 48 H 0.271 0.729 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.195 -25.389 8.664 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.132 4.132 4 C -0.011 4.011 5 O -0.282 6.282 6 C -0.032 4.032 7 C 0.300 3.700 8 O -0.389 6.389 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.173 4.173 12 C -0.146 4.146 13 C -0.036 4.036 14 H 0.099 0.901 15 N -0.287 5.287 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.042 4.042 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.493 -24.703 8.562 30.390 hybrid contribution -0.587 0.574 -0.564 0.996 sum -16.080 -24.129 7.998 30.079 Atomic orbital electron populations 1.23931 0.95904 1.02140 1.00395 1.22793 0.96019 0.97919 1.00550 1.20648 0.97960 0.95990 0.98558 1.22502 0.93999 0.85954 0.98660 1.88016 1.54292 1.37569 1.48331 1.22216 0.93084 0.95944 0.91920 1.20245 0.79782 0.88241 0.81781 1.90762 1.62776 1.52256 1.33131 1.48009 1.39514 1.18612 1.28316 1.21828 0.96565 0.93240 0.90229 1.21994 0.94070 0.98318 1.02943 1.21550 1.01373 0.93937 0.97746 1.21956 0.89828 0.92307 0.99485 0.90091 1.60264 1.53430 1.04486 1.10526 1.21752 0.99466 0.96481 0.90792 1.19776 0.85670 0.86614 0.85285 1.90520 1.57034 1.71415 1.27905 1.41873 1.51220 1.19340 1.07520 1.19758 1.32429 0.95545 0.95174 0.87845 1.25271 0.98055 1.00000 0.94646 1.69622 1.47097 1.39487 0.97983 0.85797 0.78746 0.81188 0.78579 1.19214 1.20758 1.20786 1.22571 0.93356 0.84465 1.03818 0.88258 0.88343 0.87147 0.90404 0.89796 0.92950 0.93005 0.90224 0.90334 0.90839 0.90104 0.90194 0.91328 0.90416 0.91536 0.82961 0.89540 0.93577 0.77416 0.91913 0.88842 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 14.32 29.01 0.42 -0.58 16 2 C -0.15 -0.88 9.52 -36.03 -0.34 -1.23 16 3 C -0.09 -0.67 6.03 -27.88 -0.17 -0.84 16 4 C 0.07 0.47 5.92 37.16 0.22 0.69 16 5 O -0.36 -3.99 9.88 -55.14 -0.54 -4.53 16 6 C 0.05 0.41 4.76 36.01 0.17 0.58 16 7 C 0.51 6.33 7.78 -10.99 -0.09 6.24 16 8 O -0.52 -8.99 15.91 -14.35 -0.23 -9.22 16 9 N -0.61 -6.23 2.97 -172.79 -0.51 -6.75 16 10 C 0.10 0.66 6.33 -3.71 -0.02 0.64 16 11 C -0.13 -0.89 6.11 -26.45 -0.16 -1.05 16 12 C -0.11 -1.04 5.50 -26.53 -0.15 -1.18 16 13 C 0.08 0.92 2.62 -67.61 -0.18 0.75 16 14 H 0.08 1.05 7.80 -51.93 -0.41 0.64 16 15 N -0.66 -10.43 5.87 -107.88 -0.63 -11.07 16 16 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 17 C 0.44 10.63 7.82 -10.99 -0.09 10.54 16 18 O -0.58 -16.01 15.78 5.54 0.09 -15.93 16 19 N -0.56 -14.65 5.29 -10.96 -0.06 -14.70 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 21 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 24 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.08 0.99 5.68 -3.73 -0.02 0.97 16 29 H 0.10 0.41 8.06 -52.48 -0.42 -0.01 16 30 H 0.10 0.52 7.84 -52.48 -0.41 0.10 16 31 H 0.11 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.47 7.69 -51.93 -0.40 0.07 16 37 H 0.08 0.46 7.94 -51.93 -0.41 0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.31 5.93 -51.93 -0.31 0.01 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.35 5.71 8.12 -39.29 -0.32 5.39 16 45 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 46 H 0.05 0.79 7.56 -51.93 -0.39 0.40 16 47 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.09 1.38 6.48 -51.93 -0.34 1.04 16 50 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 LS Contribution 411.03 15.07 6.19 6.19 Total: -1.00 -35.53 411.03 -8.96 -44.49 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.29 Total: 11.28 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.67 Total: 8.19 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.48 Total: -56.86 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.69 Total: -29.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.53 -8.96 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211355110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.458 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds