Wall clock time and date at job start Tue Mar 31 2020 23:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47167 * 2 1 4 4 H 1.09000 * 115.55392 * 29.33045 * 3 2 1 5 5 C 1.52999 * 117.50211 * 243.62323 * 3 2 1 6 6 C 1.53000 * 60.00233 * 252.51117 * 5 3 2 7 7 H 1.08997 * 117.49607 * 107.48603 * 6 5 3 8 8 C 1.50696 * 117.49630 * 252.51094 * 6 5 3 9 9 O 1.21284 * 120.00233 * 68.62328 * 8 6 5 10 10 N 1.34783 * 120.00095 * 248.61785 * 8 6 5 11 11 C 1.46494 * 120.00176 * 180.02562 * 10 8 6 12 12 H 1.08993 * 110.27397 * 34.29945 * 11 10 8 13 13 C 1.53995 * 110.30795 * 272.20686 * 11 10 8 14 14 N 1.48124 * 106.94875 * 242.33515 * 13 11 10 15 15 C 1.46890 * 110.95654 * 214.10446 * 14 13 11 16 16 C 1.50707 * 109.47028 * 300.96291 * 15 14 13 17 17 O 1.21293 * 119.99945 * 354.03133 * 16 15 14 18 18 N 1.34776 * 120.00010 * 174.03923 * 16 15 14 19 19 C 1.37096 * 120.00096 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00033 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00059 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99989 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47581 * 89.99750 * 23 21 19 25 25 H 1.48502 * 109.47016 * 209.99949 * 23 21 19 26 26 H 1.48505 * 109.47213 * 329.99548 * 23 21 19 27 27 C 1.48536 * 105.82203 * 334.60019 * 14 13 11 28 28 C 1.54595 * 110.30717 * 156.39026 * 11 10 8 29 29 H 1.08995 * 110.72590 * 22.33642 * 28 11 10 30 30 O 1.42899 * 110.72298 * 259.22828 * 28 11 10 31 31 C 1.42905 * 114.00067 * 150.00301 * 30 28 11 32 32 H 1.08995 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46925 * 300.00074 * 1 2 3 34 34 H 1.09004 * 109.47095 * 59.99598 * 1 2 3 35 35 H 1.09000 * 109.47069 * 240.00691 * 2 1 3 36 36 H 1.08991 * 109.47295 * 120.00635 * 2 1 3 37 37 H 1.08999 * 117.49767 * 0.02562 * 5 3 2 38 38 H 1.09003 * 117.50403 * 145.02195 * 5 3 2 39 39 H 0.97008 * 119.99713 * 0.02562 * 10 8 6 40 40 H 1.09000 * 109.91908 * 1.66563 * 13 11 10 41 41 H 1.09002 * 109.91509 * 122.95714 * 13 11 10 42 42 H 1.09004 * 109.47160 * 60.95496 * 15 14 13 43 43 H 1.08996 * 109.47382 * 180.95868 * 15 14 13 44 44 H 0.96999 * 119.99952 * 359.97438 * 18 16 15 45 45 H 0.97000 * 119.99884 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.66227 * 280.82443 * 27 14 13 47 47 H 1.08996 * 110.67023 * 157.70024 * 27 14 13 48 48 H 1.09007 * 109.46541 * 300.00010 * 31 30 28 49 49 H 1.08999 * 109.47298 * 60.00073 * 31 30 28 50 50 H 1.08997 * 109.47175 * 180.02562 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9076 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1960 8 6 4.0228 2.8619 0.8914 9 8 3.2158 3.6166 1.3915 10 7 5.3425 3.1002 1.0272 11 6 5.8020 4.2704 1.7792 12 1 5.1253 4.4759 2.6086 13 6 5.8997 5.4966 0.8527 14 7 7.3217 5.9107 0.8331 15 6 7.4423 7.3701 0.7167 16 6 6.7668 7.8305 -0.5494 17 8 6.3323 7.0157 -1.3358 18 7 6.6456 9.1477 -0.8079 19 6 6.0316 9.5666 -1.9598 20 1 5.6446 8.8410 -2.6601 21 6 5.9061 10.9245 -2.2260 22 7 6.3756 11.8073 -1.3734 23 14 5.0689 11.4952 -3.7953 24 1 3.6142 11.6627 -3.5477 25 1 5.6508 12.7928 -4.2231 26 1 5.2760 10.4839 -4.8629 27 6 7.9015 5.4290 2.1130 28 6 7.2385 4.0416 2.3026 29 1 7.7489 3.2829 1.7094 30 8 7.2210 3.6741 3.6834 31 6 8.3034 2.8262 4.0730 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8933 -0.5139 0.8898 37 1 3.0091 1.1861 -2.0159 38 1 2.7213 2.9428 -1.5343 39 1 5.9880 2.4968 0.6269 40 1 5.5764 5.2286 -0.1532 41 1 5.2811 6.3057 1.2411 42 1 6.9662 7.8436 1.5753 43 1 8.4962 7.6464 0.6874 44 1 6.9928 9.7993 -0.1788 45 1 6.2884 12.7553 -1.5594 46 1 7.6353 6.0977 2.9316 47 1 8.9839 5.3304 2.0320 48 1 8.2684 1.9033 3.4940 49 1 9.2490 3.3358 3.8878 50 1 8.2180 2.5924 5.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213460279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:03 Heat of formation + Delta-G solvation = -85.836591 kcal Electronic energy + Delta-G solvation = -29902.504347 eV Core-core repulsion = 25737.705502 eV Total energy + Delta-G solvation = -4164.798845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.41101 -39.33436 -38.12259 -37.20384 -36.47357 -34.37561 -33.81002 -32.29058 -31.27618 -30.46100 -28.28672 -27.21234 -26.07691 -24.75548 -24.06980 -23.63603 -21.52613 -21.08901 -20.55857 -20.00211 -19.12141 -17.87572 -17.55476 -17.10473 -16.34180 -15.96322 -15.45251 -15.29119 -15.04268 -14.94107 -14.77246 -14.51652 -14.30373 -14.18312 -14.11688 -13.62058 -13.38439 -12.94140 -12.81255 -12.64046 -12.41438 -12.31018 -12.23909 -11.90021 -11.81070 -11.65205 -11.54519 -11.47907 -11.25272 -11.21003 -10.93919 -10.86820 -10.45589 -10.38058 -10.23131 -10.20959 -10.00734 -9.70705 -9.48455 -9.04791 -8.47463 -8.04874 -7.93454 -6.40440 -3.81145 2.49863 2.95941 3.19094 3.27582 3.33171 3.43347 3.69356 3.91303 4.10793 4.31120 4.35062 4.47343 4.58875 4.64576 4.65674 4.85545 4.93256 4.99357 5.02422 5.09124 5.09759 5.15654 5.20188 5.25574 5.35154 5.44031 5.47333 5.49118 5.59078 5.63315 5.68604 5.71409 5.78677 5.82021 5.84856 5.88862 5.91626 6.03609 6.17562 6.26264 6.32460 6.60725 6.87297 7.10448 7.15422 7.47822 7.56486 8.06908 8.24433 8.62519 9.19133 9.55091 10.06616 10.77347 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008320 B = 0.002984 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.497411 B = 9381.966146 C =12328.171120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.120 4.120 4 H 0.118 0.882 5 C -0.146 4.146 6 C -0.191 4.191 7 H 0.121 0.879 8 C 0.545 3.455 9 O -0.537 6.537 10 N -0.714 5.714 11 C 0.136 3.864 12 H 0.104 0.896 13 C 0.041 3.959 14 N -0.488 5.488 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.015 3.985 28 C 0.081 3.919 29 H 0.083 0.917 30 O -0.378 6.378 31 C 0.031 3.969 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.400 0.600 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -22.166 8.374 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.138 4.138 4 H 0.136 0.864 5 C -0.184 4.184 6 C -0.212 4.212 7 H 0.139 0.861 8 C 0.332 3.668 9 O -0.413 6.413 10 N -0.365 5.365 11 C 0.030 3.970 12 H 0.122 0.878 13 C -0.088 4.088 14 N -0.214 5.214 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.114 4.114 28 C 0.022 3.978 29 H 0.101 0.899 30 O -0.296 6.296 31 C -0.065 4.065 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.235 0.765 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.611 -22.101 7.881 23.472 hybrid contribution 0.230 0.923 0.038 0.952 sum -0.381 -21.178 7.919 22.613 Atomic orbital electron populations 1.21742 0.95183 1.01530 1.02293 1.21145 0.96298 0.93683 1.01990 1.22487 0.91286 0.98632 1.01406 0.86387 1.23136 1.01492 1.03619 0.90118 1.22264 0.97699 0.98718 1.02506 0.86084 1.19651 0.82116 0.85489 0.79588 1.90713 1.53825 1.48576 1.48183 1.45883 1.07112 1.27967 1.55530 1.21926 0.94735 0.85937 0.94399 0.87825 1.23304 0.89109 0.94999 1.01395 1.64640 1.14429 1.11878 1.30436 1.22117 1.01938 0.87913 0.97598 1.19679 0.85662 0.83410 0.88514 1.90507 1.53135 1.52884 1.49702 1.41852 1.51881 1.04967 1.21285 1.19689 1.33251 0.91635 0.98154 0.87935 1.25259 0.97845 0.95604 0.99245 1.69613 1.46304 1.02100 1.36300 0.85862 0.79101 0.78012 0.81347 1.20404 1.20925 1.19406 1.23654 1.00307 0.95278 0.92195 1.23240 0.95388 0.96549 0.82664 0.89946 1.87947 1.48303 1.68307 1.25017 1.22812 0.89674 0.93125 1.00936 0.92710 0.92471 0.92424 0.91687 0.91552 0.87779 0.87885 0.76548 0.87619 0.92976 0.93117 0.88910 0.77477 0.91879 0.92405 0.89473 0.94016 0.93744 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.87 37.16 0.37 -0.71 16 2 C -0.09 -0.71 6.22 -26.73 -0.17 -0.88 16 3 C -0.12 -1.21 5.25 -90.62 -0.48 -1.68 16 4 H 0.12 1.44 7.60 -51.93 -0.39 1.04 16 5 C -0.15 -1.47 9.88 -26.73 -0.26 -1.73 16 6 C -0.19 -1.98 5.91 -91.77 -0.54 -2.52 16 7 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 8 C 0.55 7.65 7.61 -10.98 -0.08 7.56 16 9 O -0.54 -9.77 15.93 5.55 0.09 -9.68 16 10 N -0.71 -8.91 5.02 -52.50 -0.26 -9.17 16 11 C 0.14 1.93 3.08 -66.58 -0.20 1.73 16 12 H 0.10 1.67 7.53 -51.93 -0.39 1.27 16 13 C 0.04 0.72 5.19 -2.63 -0.01 0.70 16 14 N -0.49 -8.17 5.12 -231.70 -1.19 -9.35 16 15 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 16 C 0.44 10.57 7.39 -10.98 -0.08 10.49 16 17 O -0.58 -15.65 14.10 5.55 0.08 -15.57 16 18 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 23 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.01 0.19 6.28 -1.90 -0.01 0.18 16 28 C 0.08 0.95 3.27 -24.87 -0.08 0.87 16 29 H 0.08 0.83 7.42 -51.93 -0.39 0.44 16 30 O -0.38 -4.39 10.44 -35.23 -0.37 -4.76 16 31 C 0.03 0.24 10.85 101.05 1.10 1.34 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.40 3.83 8.36 -40.82 -0.34 3.49 16 40 H 0.11 2.18 6.82 -51.93 -0.35 1.83 16 41 H 0.05 1.01 7.72 -51.93 -0.40 0.61 16 42 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.06 0.75 7.95 -51.93 -0.41 0.33 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.04 0.28 8.11 -51.93 -0.42 -0.14 16 49 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 411.30 15.07 6.20 6.20 Total: -1.00 -34.03 411.30 -8.94 -42.98 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.40 Total: 13.74 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.73 Total: 7.93 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.78 Total: -57.15 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.20 Total: -30.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.03 -8.94 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213460279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.859 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds