Wall clock time and date at job start Tue Mar 31 2020 23:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47167 * 2 1 4 4 H 1.09000 * 115.55392 * 29.33045 * 3 2 1 5 5 C 1.52999 * 117.50211 * 243.62323 * 3 2 1 6 6 C 1.53000 * 60.00233 * 252.51117 * 5 3 2 7 7 H 1.08997 * 117.49607 * 107.48603 * 6 5 3 8 8 C 1.50696 * 117.49630 * 252.51094 * 6 5 3 9 9 O 1.21284 * 120.00233 * 68.62328 * 8 6 5 10 10 N 1.34783 * 120.00095 * 248.61785 * 8 6 5 11 11 C 1.46494 * 120.00176 * 180.02562 * 10 8 6 12 12 H 1.08993 * 110.27397 * 34.29945 * 11 10 8 13 13 C 1.53995 * 110.30795 * 272.20686 * 11 10 8 14 14 N 1.48124 * 106.94875 * 242.33515 * 13 11 10 15 15 C 1.46890 * 110.95654 * 214.10446 * 14 13 11 16 16 C 1.50707 * 109.47028 * 300.96291 * 15 14 13 17 17 O 1.21293 * 119.99945 * 354.03133 * 16 15 14 18 18 N 1.34776 * 120.00010 * 174.03923 * 16 15 14 19 19 C 1.37096 * 120.00096 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00033 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00059 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99989 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99966 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47581 * 89.99750 * 23 21 19 25 25 H 1.48502 * 109.47016 * 209.99949 * 23 21 19 26 26 H 1.48505 * 109.47213 * 329.99548 * 23 21 19 27 27 C 1.48536 * 105.82203 * 334.60019 * 14 13 11 28 28 C 1.54595 * 110.30717 * 156.39026 * 11 10 8 29 29 H 1.08995 * 110.72590 * 22.33642 * 28 11 10 30 30 O 1.42899 * 110.72298 * 259.22828 * 28 11 10 31 31 C 1.42905 * 114.00067 * 150.00301 * 30 28 11 32 32 H 1.08995 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46925 * 300.00074 * 1 2 3 34 34 H 1.09004 * 109.47095 * 59.99598 * 1 2 3 35 35 H 1.09000 * 109.47069 * 240.00691 * 2 1 3 36 36 H 1.08991 * 109.47295 * 120.00635 * 2 1 3 37 37 H 1.08999 * 117.49767 * 0.02562 * 5 3 2 38 38 H 1.09003 * 117.50403 * 145.02195 * 5 3 2 39 39 H 0.97008 * 119.99713 * 0.02562 * 10 8 6 40 40 H 1.09000 * 109.91908 * 1.66563 * 13 11 10 41 41 H 1.09002 * 109.91509 * 122.95714 * 13 11 10 42 42 H 1.09004 * 109.47160 * 60.95496 * 15 14 13 43 43 H 1.08996 * 109.47382 * 180.95868 * 15 14 13 44 44 H 0.96999 * 119.99952 * 359.97438 * 18 16 15 45 45 H 0.97000 * 119.99884 * 179.97438 * 22 21 19 46 46 H 1.09005 * 110.66227 * 280.82443 * 27 14 13 47 47 H 1.08996 * 110.67023 * 157.70024 * 27 14 13 48 48 H 1.09007 * 109.46541 * 300.00010 * 31 30 28 49 49 H 1.08999 * 109.47298 * 60.00073 * 31 30 28 50 50 H 1.08997 * 109.47175 * 180.02562 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9076 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1960 8 6 4.0228 2.8619 0.8914 9 8 3.2158 3.6166 1.3915 10 7 5.3425 3.1002 1.0272 11 6 5.8020 4.2704 1.7792 12 1 5.1253 4.4759 2.6086 13 6 5.8997 5.4966 0.8527 14 7 7.3217 5.9107 0.8331 15 6 7.4423 7.3701 0.7167 16 6 6.7668 7.8305 -0.5494 17 8 6.3323 7.0157 -1.3358 18 7 6.6456 9.1477 -0.8079 19 6 6.0316 9.5666 -1.9598 20 1 5.6446 8.8410 -2.6601 21 6 5.9061 10.9245 -2.2260 22 7 6.3756 11.8073 -1.3734 23 14 5.0689 11.4952 -3.7953 24 1 3.6142 11.6627 -3.5477 25 1 5.6508 12.7928 -4.2231 26 1 5.2760 10.4839 -4.8629 27 6 7.9015 5.4290 2.1130 28 6 7.2385 4.0416 2.3026 29 1 7.7489 3.2829 1.7094 30 8 7.2210 3.6741 3.6834 31 6 8.3034 2.8262 4.0730 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8933 -0.5139 0.8898 37 1 3.0091 1.1861 -2.0159 38 1 2.7213 2.9428 -1.5343 39 1 5.9880 2.4968 0.6269 40 1 5.5764 5.2286 -0.1532 41 1 5.2811 6.3057 1.2411 42 1 6.9662 7.8436 1.5753 43 1 8.4962 7.6464 0.6874 44 1 6.9928 9.7993 -0.1788 45 1 6.2884 12.7553 -1.5594 46 1 7.6353 6.0977 2.9316 47 1 8.9839 5.3304 2.0320 48 1 8.2684 1.9033 3.4940 49 1 9.2490 3.3358 3.8878 50 1 8.2180 2.5924 5.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213460279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:02 Heat of formation + Delta-G solvation = -112.632341 kcal Electronic energy + Delta-G solvation = -29903.666298 eV Core-core repulsion = 25737.705502 eV Total energy + Delta-G solvation = -4165.960796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.56087 -40.59773 -39.69856 -38.09723 -37.66965 -36.00265 -35.47891 -33.33246 -32.96104 -31.72366 -29.46755 -28.46348 -27.16584 -26.23619 -25.15833 -24.55174 -22.70943 -22.20277 -21.48578 -21.02655 -20.93680 -19.89612 -18.59305 -18.16529 -17.71298 -17.42017 -16.68092 -16.56926 -16.35369 -15.98938 -15.89021 -15.84407 -15.51426 -15.31327 -15.19793 -14.97290 -14.84003 -14.46766 -13.97246 -13.56771 -13.52588 -13.44803 -13.31650 -13.14900 -13.04837 -13.00836 -12.95845 -12.56686 -12.44621 -12.43358 -12.19852 -12.13534 -11.94217 -11.84701 -11.51596 -11.28743 -11.10215 -10.90850 -10.69685 -10.35608 -10.18023 -10.03904 -9.49415 -8.49334 -5.98071 1.35324 1.38943 1.41093 1.51919 1.94323 2.01504 2.24764 2.46385 2.83090 2.94879 3.16683 3.23140 3.47784 3.54403 3.66261 3.74719 3.83555 3.90137 4.10386 4.14332 4.22231 4.26296 4.27825 4.38731 4.46710 4.48151 4.51054 4.56180 4.58804 4.64576 4.71430 4.77345 4.80063 4.91113 4.92443 4.94262 4.97883 5.14535 5.21639 5.29536 5.37399 5.38256 5.49411 5.64606 5.74843 6.00363 6.19338 6.46071 6.56955 7.09682 7.17812 7.52188 8.07848 8.68230 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008320 B = 0.002984 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.497411 B = 9381.966146 C =12328.171120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.121 4.121 4 H 0.087 0.913 5 C -0.145 4.145 6 C -0.187 4.187 7 H 0.160 0.840 8 C 0.535 3.465 9 O -0.589 6.589 10 N -0.701 5.701 11 C 0.141 3.859 12 H 0.081 0.919 13 C 0.049 3.951 14 N -0.496 5.496 15 C 0.047 3.953 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.272 1.272 27 C 0.016 3.984 28 C 0.097 3.903 29 H 0.109 0.891 30 O -0.397 6.397 31 C 0.022 3.978 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.417 0.583 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.059 0.941 47 H 0.117 0.883 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -24.274 8.628 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.140 4.140 4 H 0.105 0.895 5 C -0.182 4.182 6 C -0.207 4.207 7 H 0.178 0.822 8 C 0.323 3.677 9 O -0.469 6.469 10 N -0.353 5.353 11 C 0.035 3.965 12 H 0.099 0.901 13 C -0.081 4.081 14 N -0.222 5.222 15 C -0.085 4.085 16 C 0.225 3.775 17 O -0.500 6.500 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.196 1.196 27 C -0.112 4.112 28 C 0.038 3.962 29 H 0.127 0.873 30 O -0.315 6.315 31 C -0.073 4.073 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.140 0.860 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.135 0.865 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.181 -24.231 8.156 25.594 hybrid contribution -0.303 1.571 0.020 1.600 sum 0.878 -22.660 8.176 24.106 Atomic orbital electron populations 1.21761 0.95209 1.02350 1.01606 1.21149 0.96241 0.91659 1.03321 1.22499 0.90761 0.99753 1.00966 0.89489 1.23180 1.01402 1.02819 0.90831 1.22364 0.98392 0.98143 1.01837 0.82222 1.20425 0.82083 0.86062 0.79080 1.90688 1.55170 1.50631 1.50453 1.45779 1.07196 1.27425 1.54881 1.21682 0.96445 0.85315 0.93075 0.90105 1.23042 0.89516 0.95709 0.99801 1.64598 1.13503 1.10765 1.33300 1.22023 1.02826 0.89070 0.94541 1.20719 0.84480 0.82487 0.89805 1.90484 1.54364 1.53666 1.51534 1.41920 1.52343 1.05840 1.20969 1.19637 1.35300 0.91995 0.99256 0.90433 1.26048 0.97920 0.95116 1.02227 1.69671 1.46413 1.02527 1.37499 0.84938 0.78196 0.77829 0.77444 1.19879 1.19249 1.19631 1.23803 1.01717 0.95634 0.90048 1.23062 0.92879 0.96769 0.83534 0.87347 1.87934 1.50048 1.69156 1.24356 1.23077 0.89032 0.93295 1.01917 0.91058 0.93544 0.92853 0.89727 0.90672 0.84642 0.90875 0.74487 0.91325 0.96133 0.91711 0.85989 0.77018 0.91257 0.92296 0.86510 0.92470 0.92397 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.87 71.98 0.71 -1.34 16 2 C -0.09 -1.15 6.22 30.59 0.19 -0.96 16 3 C -0.12 -2.43 5.25 -10.79 -0.06 -2.49 16 4 H 0.09 2.31 7.60 -2.39 -0.02 2.29 16 5 C -0.14 -2.87 9.88 30.59 0.30 -2.57 16 6 C -0.19 -3.71 5.91 -11.54 -0.07 -3.78 16 7 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 8 C 0.53 15.51 7.61 87.65 0.67 16.17 16 9 O -0.59 -23.09 15.93 -3.04 -0.05 -23.14 16 10 N -0.70 -17.43 5.02 -438.38 -2.20 -19.63 16 11 C 0.14 4.09 3.08 45.87 0.14 4.23 16 12 H 0.08 2.74 7.53 -2.39 -0.02 2.72 16 13 C 0.05 1.80 5.19 86.40 0.45 2.25 16 14 N -0.50 -16.33 5.12 -886.96 -4.54 -20.88 16 15 C 0.05 1.68 5.30 85.56 0.45 2.13 16 16 C 0.44 21.59 7.39 87.66 0.65 22.24 16 17 O -0.61 -34.81 14.10 -3.07 -0.04 -34.85 16 18 N -0.57 -30.39 5.29 -306.98 -1.62 -32.02 16 19 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.74 13.05 21.66 0.28 -50.46 16 23 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 C 0.02 0.37 6.28 86.65 0.54 0.92 16 28 C 0.10 2.07 3.27 31.80 0.10 2.18 16 29 H 0.11 1.78 7.42 -2.39 -0.02 1.76 16 30 O -0.40 -8.29 10.44 -148.98 -1.56 -9.85 16 31 C 0.02 0.27 10.85 113.37 1.23 1.50 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.08 0.83 7.87 -2.39 -0.02 0.81 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.14 1.82 8.03 -2.39 -0.02 1.80 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.42 7.28 8.36 -92.70 -0.78 6.50 16 40 H 0.07 3.04 6.82 -2.39 -0.02 3.02 16 41 H 0.02 0.86 7.72 -2.39 -0.02 0.84 16 42 H 0.06 2.17 8.00 -2.38 -0.02 2.15 16 43 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 44 H 0.40 19.93 7.90 -92.71 -0.73 19.19 16 45 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.06 1.40 7.95 -2.38 -0.02 1.38 16 47 H 0.12 2.10 8.14 -2.39 -0.02 2.09 16 48 H 0.06 0.54 8.11 -2.38 -0.02 0.52 16 49 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.00 411.30 -1.66 -80.67 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -0.56 Total: 42.45 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.59 Total: 21.65 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -8.08 Total: -122.99 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -1.65 Total: -67.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -79.00 -1.66 -80.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213460279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.966 kcal (2) G-P(sol) polarization free energy of solvation -79.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds