Wall clock time and date at job start Wed Apr 1 2020 00:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46625 * 2 1 4 4 H 1.09001 * 109.47125 * 304.99562 * 3 2 1 5 5 C 1.50700 * 109.46467 * 184.99839 * 3 2 1 6 6 O 1.21280 * 119.99883 * 239.99939 * 5 3 2 7 7 N 1.34773 * 120.00375 * 60.00590 * 5 3 2 8 8 C 1.46500 * 120.00200 * 180.02562 * 7 5 3 9 9 H 1.09002 * 110.88857 * 34.29247 * 8 7 5 10 10 C 1.54915 * 111.03417 * 270.38731 * 8 7 5 11 11 N 1.47418 * 104.83107 * 204.89999 * 10 8 7 12 12 C 1.36939 * 125.64960 * 204.07747 * 11 10 8 13 13 H 1.08001 * 119.99891 * 0.04058 * 12 11 10 14 14 C 1.38809 * 120.00452 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99639 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00533 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46723 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47647 * 119.99637 * 16 14 12 19 19 H 1.48501 * 109.46835 * 240.00216 * 16 14 12 20 20 C 1.47029 * 108.70495 * 24.13113 * 11 10 8 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 11 10 22 22 H 1.09001 * 110.71543 * 96.16961 * 21 20 11 23 23 O 1.42897 * 110.86707 * 219.37089 * 21 20 11 24 24 C 1.42898 * 114.00394 * 263.61202 * 23 21 20 25 25 N 1.46498 * 109.47284 * 65.00048 * 3 2 1 26 26 C 1.46760 * 124.34633 * 239.72365 * 25 3 2 27 27 C 1.54665 * 105.37932 * 162.85320 * 26 25 3 28 28 C 1.54625 * 101.68468 * 25.76843 * 27 26 25 29 29 C 1.34422 * 124.35018 * 60.01951 * 25 3 2 30 30 O 1.21279 * 124.94304 * 0.42956 * 29 25 3 31 31 H 1.08997 * 109.46982 * 300.00039 * 1 2 3 32 32 H 1.09003 * 109.46893 * 60.00723 * 1 2 3 33 33 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46982 * 239.99961 * 2 1 3 35 35 H 1.08994 * 109.46824 * 119.99487 * 2 1 3 36 36 H 0.97001 * 119.99748 * 359.97438 * 7 5 3 37 37 H 1.08995 * 110.36257 * 323.74273 * 10 8 7 38 38 H 1.08997 * 110.36405 * 86.05992 * 10 8 7 39 39 H 0.97001 * 119.99838 * 179.97438 * 15 14 12 40 40 H 1.08993 * 109.88066 * 239.51797 * 20 11 10 41 41 H 1.09003 * 109.87770 * 118.35455 * 20 11 10 42 42 H 1.08997 * 109.47704 * 180.02562 * 24 23 21 43 43 H 1.09006 * 109.46718 * 300.00612 * 24 23 21 44 44 H 1.08992 * 109.47183 * 59.99958 * 24 23 21 45 45 H 1.08996 * 110.24385 * 281.97614 * 26 25 3 46 46 H 1.08999 * 110.24968 * 43.98209 * 26 25 3 47 47 H 1.09001 * 111.19364 * 267.58547 * 27 26 25 48 48 H 1.09004 * 110.85353 * 143.78872 * 27 26 25 49 49 H 1.09005 * 110.48341 * 216.30527 * 28 27 26 50 50 H 1.08998 * 110.48987 * 93.67086 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 8 4.2216 1.9436 0.7478 7 7 4.1298 0.8912 -1.2031 8 6 5.5899 0.8925 -1.3231 9 1 6.0603 0.7868 -0.3455 10 6 6.0875 2.1704 -2.0436 11 7 7.3860 1.7918 -2.6297 12 6 8.3998 2.6553 -2.9489 13 1 8.2826 3.7144 -2.7728 14 6 9.5783 2.1695 -3.4984 15 7 9.7211 0.8787 -3.7132 16 14 10.9615 3.3473 -3.9331 17 1 10.5538 4.7351 -3.5969 18 1 12.1785 2.9879 -3.1619 19 1 11.2514 3.2553 -5.3866 20 6 7.4120 0.3336 -2.8162 21 6 6.0690 -0.2190 -2.2939 22 1 5.3607 -0.3478 -3.1123 23 8 6.2623 -1.4509 -1.5962 24 6 6.0359 -2.6135 -2.3956 25 7 1.6524 2.0975 1.2518 26 6 0.8122 3.2981 1.3325 27 6 0.3191 3.3560 2.7973 28 6 1.4369 2.5829 3.5348 29 6 2.0253 1.6794 2.4737 30 8 2.7310 0.7179 2.6935 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 3.5862 0.4917 -1.9000 37 1 5.3877 2.4609 -2.8271 38 1 6.2164 2.9830 -1.3287 39 1 10.5445 0.5392 -4.0975 40 1 8.2363 -0.0980 -2.2486 41 1 7.5238 0.0972 -3.8743 42 1 6.2025 -3.5067 -1.7936 43 1 5.0090 -2.6085 -2.7613 44 1 6.7228 -2.6120 -3.2418 45 1 1.3985 4.1854 1.0937 46 1 -0.0359 3.2114 0.6533 47 1 -0.6420 2.8541 2.9096 48 1 0.2617 4.3868 3.1470 49 1 1.0183 1.9922 4.3496 50 1 2.1928 3.2720 3.9112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213882329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:20 Heat of formation + Delta-G solvation = -105.165840 kcal Electronic energy + Delta-G solvation = -31306.414778 eV Core-core repulsion = 27140.777754 eV Total energy + Delta-G solvation = -4165.637024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.90512 -40.69305 -39.49082 -37.55978 -37.37785 -35.93842 -35.52522 -33.64913 -31.91278 -30.68523 -29.27699 -28.40515 -27.83362 -27.49393 -25.96575 -23.35301 -22.70742 -22.65882 -22.20344 -21.66065 -20.11927 -19.15925 -18.47229 -18.09075 -17.67145 -17.24686 -16.98159 -16.50237 -16.34876 -15.88625 -15.81684 -15.74208 -15.24970 -15.20895 -15.04342 -14.63507 -14.53947 -14.25426 -14.09704 -13.77621 -13.67979 -13.63610 -13.35043 -13.19624 -13.01695 -12.94514 -12.80359 -12.61001 -12.38858 -12.34320 -12.11662 -12.05644 -11.98226 -11.89895 -11.77531 -11.67410 -11.04988 -10.81057 -10.65513 -10.61309 -10.13625 -9.64882 -9.00062 -7.90064 -5.28709 1.43426 1.45881 1.53323 1.56048 1.60126 1.90327 2.24643 2.44697 2.74818 3.29255 3.42677 3.48495 3.60027 3.70516 3.81973 3.86856 3.89507 3.99177 4.06076 4.09926 4.25732 4.32873 4.38571 4.41993 4.51401 4.56627 4.61790 4.71638 4.72642 4.77412 4.80916 4.84229 4.89021 4.95251 5.07464 5.12380 5.18787 5.26650 5.29965 5.34442 5.38419 5.42775 5.60145 5.62535 6.10392 6.20582 6.29543 6.49775 7.01584 7.19595 7.31409 7.66473 8.29297 9.19665 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002996 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.920943 B = 9343.716709 C =10451.559327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.148 3.852 4 H 0.157 0.843 5 C 0.495 3.505 6 O -0.572 6.572 7 N -0.698 5.698 8 C 0.152 3.848 9 H 0.059 0.941 10 C 0.136 3.864 11 N -0.622 5.622 12 C -0.248 4.248 13 H 0.083 0.917 14 C -0.063 4.063 15 N -0.949 5.949 16 Si 0.983 3.017 17 H -0.266 1.266 18 H -0.294 1.294 19 H -0.285 1.285 20 C 0.175 3.825 21 C 0.078 3.922 22 H 0.102 0.898 23 O -0.402 6.402 24 C 0.026 3.974 25 N -0.606 5.606 26 C 0.095 3.905 27 C -0.113 4.113 28 C -0.155 4.155 29 C 0.505 3.495 30 O -0.578 6.578 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.416 0.584 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.249 0.751 40 H 0.014 0.986 41 H 0.026 0.974 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.113 0.887 49 H 0.107 0.893 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.539 0.921 5.215 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C 0.041 3.959 4 H 0.175 0.825 5 C 0.281 3.719 6 O -0.450 6.450 7 N -0.352 5.352 8 C 0.045 3.955 9 H 0.077 0.923 10 C 0.009 3.991 11 N -0.350 5.350 12 C -0.376 4.376 13 H 0.101 0.899 14 C -0.256 4.256 15 N -0.597 5.597 16 Si 0.811 3.189 17 H -0.190 1.190 18 H -0.221 1.221 19 H -0.212 1.212 20 C 0.049 3.951 21 C 0.019 3.981 22 H 0.120 0.880 23 O -0.321 6.321 24 C -0.070 4.070 25 N -0.339 5.339 26 C -0.026 4.026 27 C -0.151 4.151 28 C -0.195 4.195 29 C 0.294 3.706 30 O -0.458 6.458 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.131 0.869 49 H 0.126 0.874 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -27.456 0.745 6.005 28.114 hybrid contribution 1.693 0.025 -0.634 1.808 sum -25.762 0.770 5.371 26.328 Atomic orbital electron populations 1.21663 0.92027 1.02702 1.02956 1.21865 0.99050 0.92909 1.03155 1.21049 0.88453 0.97252 0.89148 0.82541 1.21790 0.92369 0.76953 0.80776 1.90715 1.66582 1.46462 1.41198 1.45614 1.05804 1.60230 1.23517 1.21762 0.80863 0.94700 0.98201 0.92269 1.21885 0.87490 0.94897 0.94831 1.44539 1.13632 1.03312 1.73498 1.19493 0.93509 0.89881 1.34751 0.89901 1.25711 1.00445 0.97968 1.01502 1.70176 1.26696 1.12648 1.50207 0.84946 0.78463 0.78281 0.77222 1.19006 1.22079 1.21172 1.21285 0.92905 0.83425 0.97443 1.23508 0.97132 0.83868 0.93636 0.88028 1.87916 1.91091 1.14329 1.38725 1.22999 1.00795 0.87254 0.95923 1.48142 1.51469 1.29811 1.04465 1.22504 0.94570 0.85717 0.99814 1.22647 0.97590 1.02845 0.91998 1.22374 1.00523 0.99088 0.97486 1.21635 0.78649 0.84321 0.85951 1.90686 1.39115 1.31230 1.84722 0.92883 0.89856 0.91943 0.88826 0.93780 0.74576 0.93332 0.95211 0.94180 0.96813 0.95560 0.88449 0.91398 0.94392 0.91184 0.86782 0.87915 0.86883 0.87432 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.80 71.99 0.71 -0.79 16 2 C -0.13 -2.36 5.30 30.60 0.16 -2.20 16 3 C 0.15 2.98 2.67 44.25 0.12 3.10 16 4 H 0.16 1.75 8.07 -2.39 -0.02 1.73 16 5 C 0.49 15.76 6.85 87.66 0.60 16.36 16 6 O -0.57 -24.97 14.56 11.55 0.17 -24.80 16 7 N -0.70 -20.56 5.08 -435.96 -2.21 -22.78 16 8 C 0.15 6.10 3.09 46.38 0.14 6.24 16 9 H 0.06 2.94 7.63 -2.39 -0.02 2.92 16 10 C 0.14 6.04 6.93 86.86 0.60 6.64 16 11 N -0.62 -33.76 3.39 -691.98 -2.35 -36.11 16 12 C -0.25 -14.50 10.28 84.03 0.86 -13.64 16 13 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 14 C -0.06 -3.69 5.49 84.86 0.47 -3.23 16 15 N -0.95 -58.33 10.31 21.65 0.22 -58.11 16 16 Si 0.98 46.99 29.55 68.60 2.03 49.01 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 C 0.18 9.06 5.15 86.73 0.45 9.50 16 21 C 0.08 3.03 3.07 31.78 0.10 3.13 16 22 H 0.10 3.16 7.68 -2.39 -0.02 3.14 16 23 O -0.40 -15.62 10.44 -148.98 -1.56 -17.17 16 24 C 0.03 0.73 10.85 113.37 1.23 1.96 16 25 N -0.61 -12.44 2.08 -797.85 -1.66 -14.10 16 26 C 0.10 0.98 7.31 86.90 0.64 1.62 16 27 C -0.11 -0.83 7.19 31.72 0.23 -0.60 16 28 C -0.15 -2.59 6.86 30.59 0.21 -2.38 16 29 C 0.50 14.00 6.69 87.90 0.59 14.58 16 30 O -0.58 -22.90 15.33 11.55 0.18 -22.73 16 31 H 0.05 0.62 7.75 -2.39 -0.02 0.60 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.35 7.43 -2.39 -0.02 1.33 16 35 H 0.04 1.20 6.65 -2.39 -0.02 1.18 16 36 H 0.42 8.45 7.90 -92.71 -0.73 7.72 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.01 0.83 7.30 -2.39 -0.02 0.81 16 41 H 0.03 1.45 7.50 -2.39 -0.02 1.43 16 42 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 1.43 8.11 -2.38 -0.02 1.41 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 47 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 49 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -92.00 399.46 2.12 -89.89 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.20 Total: 16.60 kcal Atomic # 6 Polarization: 33.19 SS G_CDS: 7.10 Total: 40.29 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -6.00 Total: -131.09 kcal Atomic # 8 Polarization: -63.49 SS G_CDS: -1.21 Total: -64.70 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -92.00 2.12 -89.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213882329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.279 kcal (2) G-P(sol) polarization free energy of solvation -92.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds