Wall clock time and date at job start Tue Mar 31 2020 23:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47017 * 2 1 4 4 H 1.08999 * 109.47511 * 305.00078 * 3 2 1 5 5 C 1.53007 * 109.46957 * 65.00341 * 3 2 1 6 6 C 1.50696 * 109.46940 * 184.99756 * 3 2 1 7 7 O 1.21280 * 120.00367 * 337.42741 * 6 3 2 8 8 N 1.34775 * 119.99917 * 157.42264 * 6 3 2 9 9 C 1.45735 * 117.51677 * 4.79850 * 8 6 3 10 10 C 1.53274 * 109.23832 * 156.39019 * 9 8 6 11 11 O 1.43216 * 107.39049 * 51.98973 * 10 9 8 12 12 C 1.42297 * 114.02656 * 289.66134 * 11 10 9 13 13 H 1.08994 * 109.78178 * 289.22208 * 12 11 10 14 14 C 1.54010 * 108.95970 * 168.95257 * 12 11 10 15 15 N 1.47346 * 107.41985 * 235.21974 * 14 12 11 16 16 C 1.46902 * 110.99910 * 142.17019 * 15 14 12 17 17 C 1.50696 * 109.47094 * 181.81488 * 16 15 14 18 18 O 1.21300 * 119.99991 * 353.85240 * 17 16 15 19 19 N 1.34769 * 120.00180 * 173.85033 * 17 16 15 20 20 C 1.37096 * 120.00113 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00294 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00305 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99591 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00515 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46810 * 60.00144 * 24 22 20 26 26 H 1.48503 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47212 * 300.00544 * 24 22 20 28 28 C 1.47671 * 107.62824 * 20.51443 * 15 14 12 29 29 C 1.44213 * 117.51532 * 184.82021 * 8 6 3 30 30 H 1.09000 * 107.96485 * 307.84667 * 29 8 6 31 31 H 1.08998 * 109.47141 * 300.00077 * 1 2 3 32 32 H 1.09001 * 109.46697 * 59.99501 * 1 2 3 33 33 H 1.08995 * 109.47415 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46742 * 240.00176 * 2 1 3 35 35 H 1.08996 * 109.46776 * 120.00001 * 2 1 3 36 36 H 1.09004 * 109.46994 * 290.82789 * 5 3 2 37 37 H 1.08996 * 109.47008 * 50.82537 * 5 3 2 38 38 H 1.08998 * 109.47182 * 170.83482 * 5 3 2 39 39 H 1.08992 * 109.50996 * 276.32583 * 9 8 6 40 40 H 1.09005 * 109.50575 * 36.41225 * 9 8 6 41 41 H 1.09007 * 109.88954 * 171.45917 * 10 9 8 42 42 H 1.08999 * 109.89536 * 292.56450 * 10 9 8 43 43 H 1.09000 * 109.85858 * 354.68155 * 14 12 11 44 44 H 1.09004 * 109.85619 * 115.75883 * 14 12 11 45 45 H 1.08998 * 109.46864 * 301.81129 * 16 15 14 46 46 H 1.08998 * 109.46932 * 61.81640 * 16 15 14 47 47 H 0.97003 * 119.99906 * 359.97438 * 19 17 16 48 48 H 0.96999 * 119.99923 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.24938 * 89.76152 * 28 15 14 50 50 H 1.09003 * 110.24935 * 211.76542 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3075 6 6 3.5419 1.4443 -0.1238 7 8 4.1783 0.4639 0.1999 8 7 4.1780 2.5354 -0.5942 9 6 3.3728 3.7193 -0.8660 10 6 4.2677 4.9624 -0.8104 11 8 5.3877 4.7223 -1.6701 12 6 6.2970 3.7447 -1.1776 13 1 6.8384 4.1435 -0.3199 14 6 7.2898 3.3765 -2.2959 15 7 7.2283 1.9154 -2.4769 16 6 7.3436 1.5555 -3.8965 17 6 7.2320 0.0602 -4.0462 18 8 7.1843 -0.6461 -3.0612 19 7 7.1851 -0.4924 -5.2745 20 6 7.0842 -1.8528 -5.4107 21 1 7.0417 -2.4817 -4.5338 22 6 7.0353 -2.4226 -6.6771 23 7 7.0864 -1.6573 -7.7443 24 14 6.8984 -4.2763 -6.8628 25 1 5.6516 -4.7485 -6.2087 26 1 6.8652 -4.6282 -8.3052 27 1 8.0701 -4.9258 -6.2222 28 6 5.9448 1.4489 -1.9151 29 6 5.6036 2.4424 -0.7909 30 1 6.0477 2.0779 0.1354 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5550 2.2714 1.3224 37 1 1.9297 1.5017 2.1506 38 1 2.1326 3.0937 1.3806 39 1 2.9262 3.6362 -1.8568 40 1 2.5848 3.8033 -0.1175 41 1 3.7136 5.8341 -1.1588 42 1 4.6134 5.1252 0.2104 43 1 7.0065 3.8765 -3.2220 44 1 8.2987 3.6717 -2.0073 45 1 6.5445 2.0377 -4.4595 46 1 8.3089 1.8879 -4.2783 47 1 7.2229 0.0724 -6.0622 48 1 7.0527 -2.0550 -8.6284 49 1 5.1695 1.4653 -2.6811 50 1 6.0539 0.4431 -1.5094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217296883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:35 Heat of formation + Delta-G solvation = -98.816945 kcal Electronic energy + Delta-G solvation = -31389.022961 eV Core-core repulsion = 27223.661246 eV Total energy + Delta-G solvation = -4165.361715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.23055 -39.26622 -38.28791 -36.68408 -35.60315 -35.17631 -33.84978 -31.85381 -31.11974 -30.10663 -28.85452 -28.37656 -26.53855 -25.37955 -24.21926 -23.62867 -22.35561 -21.22910 -20.25084 -19.15161 -18.78656 -17.86632 -17.56994 -17.25246 -16.36293 -16.14675 -15.76298 -15.44095 -15.06712 -14.92938 -14.74530 -14.52658 -14.13300 -14.04590 -13.92514 -13.54873 -13.33585 -13.20313 -12.87568 -12.72298 -12.62388 -12.28123 -12.02078 -11.98661 -11.86304 -11.76492 -11.63783 -11.47786 -11.30837 -11.14322 -10.99979 -10.90703 -10.85414 -10.69207 -10.40184 -10.17043 -10.10134 -9.57475 -9.43030 -8.73209 -8.38778 -7.96897 -7.87319 -6.37070 -3.77512 2.54607 2.67729 3.23959 3.28790 3.33782 3.41555 3.95799 4.10556 4.15148 4.30509 4.38510 4.46932 4.50468 4.60415 4.68417 4.76276 4.83058 4.94267 5.05177 5.15168 5.15691 5.20950 5.25617 5.28997 5.31560 5.34844 5.41092 5.48517 5.54046 5.63361 5.64421 5.73884 5.79172 5.88603 5.90856 5.95150 6.04884 6.10560 6.19962 6.31701 6.42024 6.64155 6.85696 7.16562 7.21956 7.26355 7.59943 8.10858 8.13518 8.66923 9.23064 9.58993 10.11456 10.80785 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.003451 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.633007 B = 8111.533597 C =10066.025503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.109 4.109 4 H 0.092 0.908 5 C -0.144 4.144 6 C 0.510 3.490 7 O -0.516 6.516 8 N -0.601 5.601 9 C 0.070 3.930 10 C 0.051 3.949 11 O -0.371 6.371 12 C 0.082 3.918 13 H 0.077 0.923 14 C 0.044 3.956 15 N -0.496 5.496 16 C 0.041 3.959 17 C 0.442 3.558 18 O -0.574 6.574 19 N -0.564 5.564 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.050 3.950 29 C 0.112 3.888 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.039 0.961 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 16.636 14.104 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.131 4.131 4 H 0.110 0.890 5 C -0.201 4.201 6 C 0.297 3.703 7 O -0.390 6.390 8 N -0.336 5.336 9 C -0.053 4.053 10 C -0.026 4.026 11 O -0.289 6.289 12 C 0.023 3.977 13 H 0.095 0.905 14 C -0.084 4.084 15 N -0.221 5.221 16 C -0.090 4.090 17 C 0.227 3.773 18 O -0.457 6.457 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.079 4.079 29 C 0.007 3.993 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.111 0.889 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.695 15.443 14.804 23.917 hybrid contribution -0.763 -0.156 -1.106 1.353 sum -11.458 15.287 13.698 23.507 Atomic orbital electron populations 1.21813 0.95377 1.02024 1.01642 1.21397 0.95466 0.93924 1.03881 1.21381 0.91627 0.99693 1.00381 0.89027 1.21855 1.02025 1.00206 0.96032 1.20850 0.90337 0.82359 0.76726 1.90761 1.67994 1.32960 1.47301 1.46960 1.07092 1.13327 1.66221 1.22257 0.94599 0.85901 1.02504 1.22959 0.87599 0.96771 0.95275 1.87984 1.35546 1.58548 1.46821 1.22748 0.90127 0.87155 0.97641 0.90515 1.22910 0.98401 0.89547 0.97556 1.63701 1.33831 1.08827 1.15755 1.22112 1.02050 0.96511 0.88351 1.19701 0.84610 0.88629 0.84377 1.90534 1.54839 1.62748 1.37589 1.41833 1.64324 1.08021 1.05952 1.19659 1.47104 0.82190 0.93743 0.87975 1.25246 0.97421 1.00418 0.94838 1.69611 1.50727 1.35955 0.98213 0.85927 0.79122 0.82312 0.76925 1.19936 1.20995 1.19865 1.23235 0.89135 1.00747 0.94745 1.21356 0.80524 0.96228 1.01213 0.89199 0.92579 0.92749 0.92350 0.91200 0.90791 0.91107 0.91642 0.92251 0.90947 0.88984 0.87189 0.92119 0.91833 0.88878 0.93368 0.88867 0.77529 0.91887 0.94294 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.88 16 2 C -0.11 -1.19 4.81 -26.73 -0.13 -1.32 16 3 C -0.11 -1.10 1.89 -91.77 -0.17 -1.27 16 4 H 0.09 0.78 7.21 -51.93 -0.37 0.40 16 5 C -0.14 -1.04 8.34 37.16 0.31 -0.73 16 6 C 0.51 7.18 6.41 -10.99 -0.07 7.11 16 7 O -0.52 -9.62 14.97 5.56 0.08 -9.54 16 8 N -0.60 -7.64 2.95 -167.97 -0.50 -8.14 16 9 C 0.07 0.61 5.46 -4.31 -0.02 0.58 16 10 C 0.05 0.40 7.01 37.30 0.26 0.66 16 11 O -0.37 -4.28 10.20 -35.23 -0.36 -4.64 16 12 C 0.08 1.02 3.64 -26.45 -0.10 0.92 16 13 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.04 0.60 6.57 -3.05 -0.02 0.58 16 15 N -0.50 -8.94 5.06 -233.81 -1.18 -10.12 16 16 C 0.04 0.79 5.17 -4.98 -0.03 0.76 16 17 C 0.44 10.95 7.41 -10.99 -0.08 10.87 16 18 O -0.57 -16.27 13.97 5.54 0.08 -16.19 16 19 N -0.56 -14.84 5.29 -10.97 -0.06 -14.89 16 20 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 21 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 24 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.05 0.94 4.38 -2.95 -0.01 0.93 16 29 C 0.11 1.65 2.81 -68.95 -0.19 1.46 16 30 H 0.09 1.43 7.84 -51.93 -0.41 1.02 16 31 H 0.06 0.38 6.78 -51.93 -0.35 0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.88 8.02 -51.93 -0.42 0.46 16 36 H 0.07 0.38 7.04 -51.93 -0.37 0.02 16 37 H 0.06 0.54 8.11 -51.93 -0.42 0.11 16 38 H 0.06 0.37 6.17 -51.93 -0.32 0.05 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.55 4.78 -51.93 -0.25 0.30 16 41 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.06 0.85 7.43 -51.93 -0.39 0.47 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.86 8.01 -51.93 -0.42 0.44 16 46 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 47 H 0.39 9.83 7.90 -40.82 -0.32 9.50 16 48 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.04 0.79 7.82 -51.93 -0.41 0.38 16 50 H 0.12 2.72 6.31 -51.93 -0.33 2.39 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -35.01 387.22 -8.61 -43.62 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.08 Total: 10.33 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.14 Total: 11.49 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -1.01 Total: -57.55 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.20 Total: -30.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.01 -8.61 -43.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217296883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.193 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds