Wall clock time and date at job start Tue Mar 31 2020 23:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47017 * 2 1 4 4 H 1.08999 * 109.47511 * 305.00078 * 3 2 1 5 5 C 1.53007 * 109.46957 * 65.00341 * 3 2 1 6 6 C 1.50696 * 109.46940 * 184.99756 * 3 2 1 7 7 O 1.21280 * 120.00367 * 337.42741 * 6 3 2 8 8 N 1.34775 * 119.99917 * 157.42264 * 6 3 2 9 9 C 1.45735 * 117.51677 * 4.79850 * 8 6 3 10 10 C 1.53274 * 109.23832 * 156.39019 * 9 8 6 11 11 O 1.43216 * 107.39049 * 51.98973 * 10 9 8 12 12 C 1.42297 * 114.02656 * 289.66134 * 11 10 9 13 13 H 1.08994 * 109.78178 * 289.22208 * 12 11 10 14 14 C 1.54010 * 108.95970 * 168.95257 * 12 11 10 15 15 N 1.47346 * 107.41985 * 235.21974 * 14 12 11 16 16 C 1.46902 * 110.99910 * 142.17019 * 15 14 12 17 17 C 1.50696 * 109.47094 * 181.81488 * 16 15 14 18 18 O 1.21300 * 119.99991 * 353.85240 * 17 16 15 19 19 N 1.34769 * 120.00180 * 173.85033 * 17 16 15 20 20 C 1.37096 * 120.00113 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00294 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00305 * 179.97438 * 20 19 17 23 23 N 1.31421 * 119.99591 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00515 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46810 * 60.00144 * 24 22 20 26 26 H 1.48503 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47212 * 300.00544 * 24 22 20 28 28 C 1.47671 * 107.62824 * 20.51443 * 15 14 12 29 29 C 1.44213 * 117.51532 * 184.82021 * 8 6 3 30 30 H 1.09000 * 107.96485 * 307.84667 * 29 8 6 31 31 H 1.08998 * 109.47141 * 300.00077 * 1 2 3 32 32 H 1.09001 * 109.46697 * 59.99501 * 1 2 3 33 33 H 1.08995 * 109.47415 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46742 * 240.00176 * 2 1 3 35 35 H 1.08996 * 109.46776 * 120.00001 * 2 1 3 36 36 H 1.09004 * 109.46994 * 290.82789 * 5 3 2 37 37 H 1.08996 * 109.47008 * 50.82537 * 5 3 2 38 38 H 1.08998 * 109.47182 * 170.83482 * 5 3 2 39 39 H 1.08992 * 109.50996 * 276.32583 * 9 8 6 40 40 H 1.09005 * 109.50575 * 36.41225 * 9 8 6 41 41 H 1.09007 * 109.88954 * 171.45917 * 10 9 8 42 42 H 1.08999 * 109.89536 * 292.56450 * 10 9 8 43 43 H 1.09000 * 109.85858 * 354.68155 * 14 12 11 44 44 H 1.09004 * 109.85619 * 115.75883 * 14 12 11 45 45 H 1.08998 * 109.46864 * 301.81129 * 16 15 14 46 46 H 1.08998 * 109.46932 * 61.81640 * 16 15 14 47 47 H 0.97003 * 119.99906 * 359.97438 * 19 17 16 48 48 H 0.96999 * 119.99923 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.24938 * 89.76152 * 28 15 14 50 50 H 1.09003 * 110.24935 * 211.76542 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3075 6 6 3.5419 1.4443 -0.1238 7 8 4.1783 0.4639 0.1999 8 7 4.1780 2.5354 -0.5942 9 6 3.3728 3.7193 -0.8660 10 6 4.2677 4.9624 -0.8104 11 8 5.3877 4.7223 -1.6701 12 6 6.2970 3.7447 -1.1776 13 1 6.8384 4.1435 -0.3199 14 6 7.2898 3.3765 -2.2959 15 7 7.2283 1.9154 -2.4769 16 6 7.3436 1.5555 -3.8965 17 6 7.2320 0.0602 -4.0462 18 8 7.1843 -0.6461 -3.0612 19 7 7.1851 -0.4924 -5.2745 20 6 7.0842 -1.8528 -5.4107 21 1 7.0417 -2.4817 -4.5338 22 6 7.0353 -2.4226 -6.6771 23 7 7.0864 -1.6573 -7.7443 24 14 6.8984 -4.2763 -6.8628 25 1 5.6516 -4.7485 -6.2087 26 1 6.8652 -4.6282 -8.3052 27 1 8.0701 -4.9258 -6.2222 28 6 5.9448 1.4489 -1.9151 29 6 5.6036 2.4424 -0.7909 30 1 6.0477 2.0779 0.1354 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.5550 2.2714 1.3224 37 1 1.9297 1.5017 2.1506 38 1 2.1326 3.0937 1.3806 39 1 2.9262 3.6362 -1.8568 40 1 2.5848 3.8033 -0.1175 41 1 3.7136 5.8341 -1.1588 42 1 4.6134 5.1252 0.2104 43 1 7.0065 3.8765 -3.2220 44 1 8.2987 3.6717 -2.0073 45 1 6.5445 2.0377 -4.4595 46 1 8.3089 1.8879 -4.2783 47 1 7.2229 0.0724 -6.0622 48 1 7.0527 -2.0550 -8.6284 49 1 5.1695 1.4653 -2.6811 50 1 6.0539 0.4431 -1.5094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217296883.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:34 Heat of formation + Delta-G solvation = -126.989467 kcal Electronic energy + Delta-G solvation = -31390.244613 eV Core-core repulsion = 27223.661246 eV Total energy + Delta-G solvation = -4166.583368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.29456 -40.60743 -39.85029 -38.02127 -36.53264 -36.20571 -35.96408 -33.43147 -32.87260 -30.89394 -29.90186 -29.51588 -28.09188 -26.41440 -25.85788 -24.50695 -23.41192 -22.47354 -21.21578 -21.06273 -19.94462 -19.76402 -18.63377 -18.25579 -17.83508 -17.31688 -16.95786 -16.68867 -16.48344 -16.21562 -15.98010 -15.86952 -15.51953 -15.38403 -15.23578 -14.82774 -14.49976 -14.36303 -14.06051 -13.99822 -13.58154 -13.53765 -13.35071 -13.16439 -13.07041 -12.91406 -12.82628 -12.65872 -12.54368 -12.48474 -12.37367 -12.26594 -12.14435 -11.81195 -11.72505 -11.67549 -11.53336 -11.09160 -10.57547 -10.35214 -10.06414 -9.81721 -9.42736 -8.50969 -6.00082 1.35487 1.37031 1.45558 1.48573 1.69047 1.98755 2.24648 2.54596 2.88238 3.12859 3.16049 3.32814 3.40931 3.46828 3.72922 3.81962 3.89418 3.91291 4.00863 4.16650 4.20527 4.24257 4.26919 4.29538 4.37442 4.45734 4.47901 4.52203 4.59390 4.61720 4.69871 4.74252 4.83211 4.87922 4.92352 4.94602 5.02772 5.09077 5.15197 5.31498 5.35755 5.39241 5.45659 5.67940 5.82066 6.00086 6.07477 6.20049 6.55563 7.06599 7.07975 7.49463 8.06724 8.66401 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.003451 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.633007 B = 8111.533597 C =10066.025503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.102 4.102 4 H 0.115 0.885 5 C -0.138 4.138 6 C 0.498 3.502 7 O -0.577 6.577 8 N -0.599 5.599 9 C 0.061 3.939 10 C 0.048 3.952 11 O -0.382 6.382 12 C 0.095 3.905 13 H 0.105 0.895 14 C 0.043 3.957 15 N -0.514 5.514 16 C 0.055 3.945 17 C 0.435 3.565 18 O -0.617 6.617 19 N -0.571 5.571 20 C -0.337 4.337 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.265 1.265 27 H -0.272 1.272 28 C 0.062 3.938 29 C 0.119 3.881 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.397 0.603 48 H 0.279 0.721 49 H 0.015 0.985 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 19.937 14.133 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.133 0.867 5 C -0.195 4.195 6 C 0.287 3.713 7 O -0.456 6.456 8 N -0.332 5.332 9 C -0.060 4.060 10 C -0.028 4.028 11 O -0.301 6.301 12 C 0.036 3.964 13 H 0.123 0.877 14 C -0.084 4.084 15 N -0.240 5.240 16 C -0.077 4.077 17 C 0.222 3.778 18 O -0.503 6.503 19 N -0.208 5.208 20 C -0.466 4.466 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.189 1.189 27 H -0.197 1.197 28 C -0.068 4.068 29 C 0.013 3.987 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.083 0.917 46 H 0.140 0.860 47 H 0.231 0.769 48 H 0.089 0.911 49 H 0.033 0.967 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.218 18.823 14.805 26.884 hybrid contribution -0.305 -1.174 -1.113 1.646 sum -12.524 17.649 13.692 25.609 Atomic orbital electron populations 1.21770 0.92509 1.02477 1.03269 1.21384 0.97859 0.94439 1.01220 1.21453 0.88279 0.99469 1.03117 0.86720 1.21869 1.04026 1.00216 0.93376 1.21791 0.92147 0.81756 0.75572 1.90736 1.69530 1.35266 1.50058 1.47110 1.06524 1.14508 1.65105 1.22661 0.95123 0.84484 1.03700 1.23312 0.86432 0.97142 0.95930 1.87964 1.36455 1.57562 1.48086 1.22631 0.89876 0.86021 0.97888 0.87743 1.23063 1.00402 0.86215 0.98689 1.63590 1.33223 1.12305 1.14851 1.21994 1.04116 0.91828 0.89712 1.20769 0.82620 0.91179 0.83214 1.90521 1.56213 1.64678 1.38874 1.41879 1.64809 1.07444 1.06701 1.19593 1.49986 0.83410 0.93620 0.90805 1.26025 0.96124 1.04835 0.93982 1.69663 1.49958 1.37640 0.98625 0.85013 0.78877 0.76802 0.77775 1.19991 1.18873 1.19679 1.22847 0.89117 0.99447 0.95341 1.21130 0.82291 0.96802 0.98460 0.91092 0.90247 0.91638 0.92640 0.94879 0.92668 0.88123 0.92978 0.90505 0.90861 0.85647 0.83702 0.90554 0.90934 0.86402 0.91718 0.86000 0.76937 0.91129 0.96709 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.67 71.98 0.70 -1.47 16 2 C -0.11 -2.57 4.81 30.60 0.15 -2.42 16 3 C -0.10 -1.98 1.89 -11.54 -0.02 -2.00 16 4 H 0.11 1.69 7.21 -2.39 -0.02 1.68 16 5 C -0.14 -1.64 8.34 71.98 0.60 -1.04 16 6 C 0.50 14.69 6.41 87.66 0.56 15.25 16 7 O -0.58 -23.81 14.97 -3.03 -0.05 -23.85 16 8 N -0.60 -15.11 2.95 -803.73 -2.37 -17.48 16 9 C 0.06 0.88 5.46 86.62 0.47 1.35 16 10 C 0.05 0.55 7.01 72.07 0.51 1.05 16 11 O -0.38 -7.50 10.20 -148.98 -1.52 -9.02 16 12 C 0.09 2.15 3.64 30.78 0.11 2.26 16 13 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 14 C 0.04 1.10 6.57 86.56 0.57 1.67 16 15 N -0.51 -18.88 5.06 -893.65 -4.52 -23.40 16 16 C 0.05 2.10 5.17 85.56 0.44 2.55 16 17 C 0.43 22.69 7.41 87.66 0.65 23.34 16 18 O -0.62 -37.68 13.97 -3.09 -0.04 -37.73 16 19 N -0.57 -31.30 5.29 -306.99 -1.62 -32.92 16 20 C -0.34 -20.26 9.68 84.04 0.81 -19.45 16 21 H 0.07 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 23 N -0.92 -51.08 13.05 21.66 0.28 -50.79 16 24 Si 0.99 44.88 29.55 68.60 2.03 46.91 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 28 C 0.06 2.50 4.38 86.45 0.38 2.88 16 29 C 0.12 3.61 2.81 45.55 0.13 3.74 16 30 H 0.07 2.39 7.84 -2.39 -0.02 2.37 16 31 H 0.08 0.84 6.78 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 1.45 8.02 -2.39 -0.02 1.43 16 36 H 0.10 0.65 7.04 -2.38 -0.02 0.63 16 37 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 38 H 0.08 0.66 6.17 -2.39 -0.01 0.64 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 0.94 4.78 -2.38 -0.01 0.93 16 41 H 0.15 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.07 1.74 7.43 -2.39 -0.02 1.73 16 44 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.06 2.29 8.01 -2.39 -0.02 2.27 16 46 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 47 H 0.40 20.45 7.90 -92.71 -0.73 19.72 16 48 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.01 0.64 7.82 -2.39 -0.02 0.62 16 50 H 0.06 2.99 6.31 -2.39 -0.02 2.98 16 Total: -1.00 -84.72 387.22 -1.07 -85.79 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.22 Total: 34.84 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 6.52 Total: 27.65 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -8.23 Total: -124.59 kcal Atomic # 8 Polarization: -68.99 SS G_CDS: -1.61 Total: -70.60 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -84.72 -1.07 -85.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217296883.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.197 kcal (2) G-P(sol) polarization free energy of solvation -84.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds