Wall clock time and date at job start Tue Mar 31 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47365 * 2 1 4 4 H 1.09003 * 109.47308 * 54.99905 * 3 2 1 5 5 C 1.53004 * 109.47540 * 294.99908 * 3 2 1 6 6 C 1.50698 * 109.47284 * 174.99972 * 3 2 1 7 7 O 1.21286 * 120.00200 * 23.47803 * 6 3 2 8 8 N 1.34778 * 119.99994 * 203.48270 * 6 3 2 9 9 C 1.47037 * 120.04870 * 355.13993 * 8 6 3 10 10 C 1.53571 * 107.24721 * 130.36913 * 9 8 6 11 11 O 1.41636 * 108.48481 * 55.59553 * 10 9 8 12 12 C 1.42790 * 116.45676 * 295.98713 * 11 10 9 13 13 H 1.08997 * 111.84647 * 290.20216 * 12 11 10 14 14 C 1.54891 * 107.68551 * 166.65617 * 12 11 10 15 15 N 1.47487 * 107.16095 * 266.54304 * 14 12 11 16 16 C 1.46903 * 110.99926 * 122.45596 * 15 14 12 17 17 C 1.50700 * 109.47105 * 69.14034 * 16 15 14 18 18 O 1.21281 * 120.00362 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99743 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99807 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00235 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99472 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00238 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99402 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47421 * 60.00431 * 24 22 20 26 26 H 1.48504 * 109.47133 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47539 * 299.99990 * 24 22 20 28 28 C 1.48025 * 108.57842 * 0.17785 * 15 14 12 29 29 C 1.45547 * 120.04743 * 175.16233 * 8 6 3 30 30 H 1.09001 * 110.83139 * 345.99013 * 29 8 6 31 31 H 1.09000 * 109.47078 * 60.00301 * 1 2 3 32 32 H 1.09000 * 109.47677 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47463 * 299.99775 * 1 2 3 34 34 H 1.09002 * 109.47171 * 239.99899 * 2 1 3 35 35 H 1.09000 * 109.46893 * 120.00221 * 2 1 3 36 36 H 1.09001 * 109.46455 * 305.97683 * 5 3 2 37 37 H 1.09007 * 109.46875 * 65.96992 * 5 3 2 38 38 H 1.08994 * 109.47303 * 185.97333 * 5 3 2 39 39 H 1.09003 * 109.90355 * 249.80757 * 9 8 6 40 40 H 1.08999 * 109.90122 * 10.85883 * 9 8 6 41 41 H 1.09002 * 109.69829 * 175.61263 * 10 9 8 42 42 H 1.08995 * 109.69915 * 296.20888 * 10 9 8 43 43 H 1.08998 * 109.90055 * 25.92447 * 14 12 11 44 44 H 1.09001 * 109.90204 * 147.15534 * 14 12 11 45 45 H 1.09001 * 109.46631 * 189.13980 * 16 15 14 46 46 H 1.08998 * 109.47061 * 309.14036 * 16 15 14 47 47 H 0.97006 * 119.99858 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00017 * 179.97438 * 23 22 20 49 49 H 1.09007 * 110.42602 * 217.73292 * 28 15 14 50 50 H 1.09000 * 110.53096 * 95.30267 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5419 1.4442 0.1238 7 8 4.1795 0.4698 -0.2152 8 7 4.1766 2.5286 0.6114 9 6 3.4168 3.7484 0.9226 10 6 3.8147 4.1833 2.3407 11 8 5.2221 4.3352 2.3856 12 6 5.9965 3.1544 2.1736 13 1 5.9120 2.4587 3.0084 14 6 7.4619 3.5908 1.9259 15 7 7.6393 3.7113 0.4667 16 6 8.0822 5.0632 0.1001 17 6 9.4928 5.2783 0.5849 18 8 10.0724 4.3926 1.1770 19 7 10.1104 6.4551 0.3604 20 6 11.3939 6.6506 0.8009 21 1 11.9099 5.8619 1.3281 22 6 12.0307 7.8637 0.5690 23 7 11.4029 8.8232 -0.0730 24 14 13.7791 8.1304 1.1698 25 1 14.6769 7.1280 0.5415 26 1 14.2267 9.4971 0.7998 27 1 13.8239 7.9782 2.6463 28 6 6.3576 3.3757 -0.1935 29 6 5.6151 2.4940 0.8303 30 1 5.9886 1.4708 0.7912 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 1.9799 1.5294 -2.1516 37 1 0.5500 2.2203 -1.3476 38 1 2.0876 3.1171 -1.3542 39 1 3.6676 4.5338 0.2095 40 1 2.3477 3.5398 0.8835 41 1 3.3320 5.1300 2.5837 42 1 3.5107 3.4207 3.0577 43 1 7.6481 4.5529 2.4030 44 1 8.1448 2.8392 2.3219 45 1 8.0494 5.1748 -0.9836 46 1 7.4234 5.7989 0.5613 47 1 9.6470 7.1634 -0.1135 48 1 11.8474 9.6701 -0.2345 49 1 6.5379 2.8203 -1.1140 50 1 5.7865 4.2804 -0.4017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217296891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:37 Heat of formation + Delta-G solvation = -126.241473 kcal Electronic energy + Delta-G solvation = -30820.639119 eV Core-core repulsion = 26654.088187 eV Total energy + Delta-G solvation = -4166.550932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.17782 -40.57800 -39.80095 -37.82789 -36.46498 -36.11598 -35.86814 -33.33818 -32.71055 -30.83817 -29.78517 -29.52684 -27.96749 -26.34249 -25.78386 -24.66924 -23.22653 -22.51656 -21.25651 -20.88604 -19.89508 -19.70594 -18.70396 -18.13775 -17.80800 -17.29253 -16.71192 -16.54466 -16.46546 -16.31604 -15.99979 -15.73730 -15.61096 -15.46325 -14.92340 -14.67780 -14.53759 -14.32755 -13.89512 -13.82216 -13.63424 -13.49242 -13.34462 -13.07363 -12.95147 -12.87208 -12.76276 -12.66472 -12.55068 -12.49254 -12.42588 -12.32834 -12.11975 -11.69120 -11.66528 -11.55266 -11.48228 -11.20293 -10.70395 -10.34450 -10.00351 -9.67574 -9.33815 -8.45535 -5.94156 1.40087 1.41517 1.48599 1.52587 1.66385 2.05611 2.29259 2.56997 2.78170 3.19227 3.22737 3.31942 3.44907 3.55953 3.77343 3.81444 3.89732 3.93962 4.08345 4.12682 4.23215 4.23881 4.31125 4.39779 4.41901 4.48942 4.52442 4.55916 4.59237 4.65756 4.71960 4.75654 4.78825 4.86982 4.95157 4.98269 4.99510 5.14358 5.20192 5.29041 5.37028 5.41436 5.49379 5.77827 5.88021 6.05391 6.20052 6.25148 6.61226 7.04010 7.13446 7.56523 8.12437 8.71750 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.002196 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.783675 B =12748.957632 C =12808.223512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.102 4.102 4 H 0.124 0.876 5 C -0.142 4.142 6 C 0.512 3.488 7 O -0.581 6.581 8 N -0.600 5.600 9 C 0.064 3.936 10 C 0.043 3.957 11 O -0.392 6.392 12 C 0.077 3.923 13 H 0.095 0.905 14 C 0.067 3.933 15 N -0.520 5.520 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.047 3.953 29 C 0.113 3.887 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.078 0.922 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.507 -8.519 0.931 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.123 4.123 4 H 0.141 0.859 5 C -0.199 4.199 6 C 0.303 3.697 7 O -0.460 6.460 8 N -0.333 5.333 9 C -0.057 4.057 10 C -0.034 4.034 11 O -0.311 6.311 12 C 0.017 3.983 13 H 0.113 0.887 14 C -0.061 4.061 15 N -0.245 5.245 16 C -0.073 4.073 17 C 0.229 3.771 18 O -0.501 6.501 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.081 4.081 29 C 0.007 3.993 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.257 -9.575 0.950 28.906 hybrid contribution 0.626 0.793 0.120 1.017 sum -26.631 -8.783 1.070 28.063 Atomic orbital electron populations 1.21791 0.93064 1.02471 1.03079 1.21361 0.97377 0.93945 1.01827 1.21459 0.88335 0.99878 1.02610 0.85869 1.21839 1.03825 1.00173 0.94110 1.21630 0.91884 0.81155 0.75042 1.90697 1.69459 1.35751 1.50081 1.47754 1.06412 1.14680 1.64453 1.22958 0.98734 0.86063 0.97938 1.23113 0.80534 1.04331 0.95383 1.87586 1.18879 1.32241 1.92423 1.23627 0.90965 0.87687 0.95987 0.88737 1.22801 0.93198 1.01762 0.88353 1.63273 1.28553 1.25321 1.07313 1.21894 0.92716 0.90481 1.02239 1.20682 0.89531 0.82708 0.84142 1.90482 1.68561 1.44110 1.46925 1.41905 1.13949 1.13700 1.51584 1.19617 0.90953 1.00208 1.35404 0.90345 1.26044 1.03896 0.94566 0.96857 1.69668 1.39674 1.05544 1.41244 0.84986 0.77052 0.77639 0.78628 1.19825 1.19405 1.19685 1.23143 0.88285 0.99040 0.97637 1.21965 0.81579 1.00975 0.94821 0.88455 0.91257 0.92459 0.91296 0.92950 0.93050 0.93418 0.88439 0.91418 0.89724 0.84671 0.84800 0.91896 0.92890 0.90101 0.87568 0.91153 0.77057 0.91305 0.90383 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 71.98 0.70 -0.41 16 2 C -0.11 -1.44 4.83 30.59 0.15 -1.30 16 3 C -0.10 -1.19 1.86 -11.54 -0.02 -1.21 16 4 H 0.12 0.70 6.46 -2.39 -0.02 0.68 16 5 C -0.14 -1.26 8.55 71.98 0.62 -0.64 16 6 C 0.51 10.71 6.79 87.66 0.60 11.30 16 7 O -0.58 -17.82 15.63 -3.05 -0.05 -17.87 16 8 N -0.60 -11.42 2.75 -792.58 -2.18 -13.61 16 9 C 0.06 0.72 5.58 86.47 0.48 1.20 16 10 C 0.04 0.56 7.01 72.17 0.51 1.06 16 11 O -0.39 -9.08 9.96 -148.83 -1.48 -10.56 16 12 C 0.08 1.95 4.01 31.74 0.13 2.08 16 13 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.07 2.27 5.30 86.84 0.46 2.73 16 15 N -0.52 -18.33 4.87 -889.79 -4.33 -22.67 16 16 C 0.06 2.16 5.03 85.56 0.43 2.59 16 17 C 0.44 21.91 7.39 87.66 0.65 22.56 16 18 O -0.62 -35.09 15.08 -3.03 -0.05 -35.14 16 19 N -0.57 -30.30 5.29 -306.99 -1.62 -31.93 16 20 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 24 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.05 1.32 6.27 86.49 0.54 1.86 16 29 C 0.11 2.86 3.15 46.07 0.15 3.00 16 30 H 0.10 2.93 7.16 -2.39 -0.02 2.91 16 31 H 0.07 0.39 6.70 -2.39 -0.02 0.37 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.05 0.93 8.04 -2.39 -0.02 0.91 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.39 6.87 -2.38 -0.02 0.37 16 38 H 0.07 0.53 7.30 -2.39 -0.02 0.51 16 39 H 0.08 0.96 7.57 -2.39 -0.02 0.95 16 40 H 0.14 0.52 5.21 -2.39 -0.01 0.51 16 41 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 2.01 7.16 -2.39 -0.02 1.99 16 44 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.11 3.53 8.08 -2.39 -0.02 3.51 16 46 H 0.07 2.39 7.99 -2.39 -0.02 2.37 16 47 H 0.40 19.83 7.90 -92.70 -0.73 19.09 16 48 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 49 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 50 H 0.07 1.63 6.98 -2.39 -0.02 1.61 16 Total: -1.00 -76.87 390.27 -0.53 -77.40 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.22 Total: 32.63 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 6.65 Total: 26.09 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -7.85 Total: -118.24 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -1.57 Total: -63.57 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.87 -0.53 -77.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217296891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.840 kcal (2) G-P(sol) polarization free energy of solvation -76.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds