Wall clock time and date at job start Tue Mar 31 2020 23:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09001 * 109.47052 * 305.00275 * 3 2 1 5 5 C 1.53000 * 109.47016 * 65.00012 * 3 2 1 6 6 C 1.50700 * 109.47174 * 184.99977 * 3 2 1 7 7 O 1.21280 * 119.99772 * 0.02562 * 6 3 2 8 8 N 1.34769 * 119.99706 * 180.02562 * 6 3 2 9 9 C 1.46501 * 120.00047 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47573 * 179.97438 * 9 8 6 11 11 O 1.21279 * 119.99600 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00003 * 180.02562 * 10 9 8 13 13 C 1.44957 * 117.32412 * 356.39550 * 12 10 9 14 14 C 1.51776 * 111.99475 * 203.54377 * 13 12 10 15 15 O 1.41316 * 111.63688 * 319.66824 * 14 13 12 16 16 C 1.40788 * 118.39684 * 56.77071 * 15 14 13 17 17 H 1.09006 * 109.34667 * 188.31415 * 16 15 14 18 18 C 1.54195 * 110.23077 * 67.70621 * 16 15 14 19 19 N 1.46880 * 106.39322 * 210.33929 * 18 16 15 20 20 C 1.36940 * 125.36390 * 197.86250 * 19 18 16 21 21 H 1.07994 * 120.00245 * 169.27832 * 20 19 18 22 22 C 1.38814 * 119.99585 * 349.27820 * 20 19 18 23 23 N 1.31617 * 120.00774 * 350.24258 * 22 20 19 24 24 Si 1.86800 * 119.99432 * 170.24400 * 22 20 19 25 25 H 1.48504 * 109.47271 * 84.92953 * 24 22 20 26 26 H 1.48508 * 109.47148 * 204.92416 * 24 22 20 27 27 H 1.48496 * 109.47702 * 324.92819 * 24 22 20 28 28 C 1.46782 * 109.26785 * 17.83475 * 19 18 16 29 29 C 1.44542 * 117.32165 * 176.65838 * 12 10 9 30 30 H 1.09000 * 109.48550 * 285.85100 * 29 12 10 31 31 H 1.08999 * 109.46847 * 60.00402 * 1 2 3 32 32 H 1.09006 * 109.46580 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46992 * 299.99733 * 1 2 3 34 34 H 1.09005 * 109.47092 * 120.00258 * 2 1 3 35 35 H 1.09000 * 109.47438 * 240.00026 * 2 1 3 36 36 H 1.08997 * 109.47133 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47484 * 300.00406 * 5 3 2 38 38 H 1.09008 * 109.47247 * 59.99935 * 5 3 2 39 39 H 0.97004 * 120.00623 * 359.97438 * 8 6 3 40 40 H 1.09001 * 109.47182 * 299.99967 * 9 8 6 41 41 H 1.09000 * 109.47174 * 59.99623 * 9 8 6 42 42 H 1.09007 * 108.99739 * 324.33214 * 13 12 10 43 43 H 1.08996 * 109.00255 * 83.09156 * 13 12 10 44 44 H 1.09001 * 109.15334 * 199.01668 * 14 13 12 45 45 H 1.08999 * 108.82297 * 80.10641 * 14 13 12 46 46 H 1.08996 * 110.07865 * 91.10140 * 18 16 15 47 47 H 1.09007 * 110.06850 * 329.56571 * 18 16 15 48 48 H 0.96992 * 120.00137 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.82725 * 239.35537 * 28 19 18 50 50 H 1.08996 * 109.89756 * 118.44039 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2046 8 7 4.2149 2.6118 -0.1448 9 6 5.6749 2.6136 -0.2657 10 6 6.1773 4.0345 -0.2656 11 8 5.3929 4.9549 -0.1740 12 7 7.4981 4.2822 -0.3683 13 6 8.3894 3.1393 -0.3950 14 6 9.7923 3.5019 0.0566 15 8 10.1949 4.7578 -0.4511 16 6 9.3971 5.8822 -0.1658 17 1 9.7548 6.7347 -0.7433 18 6 9.4597 6.2125 1.3391 19 7 8.1655 6.8146 1.6855 20 6 7.9125 7.5591 2.8067 21 1 6.9847 8.1047 2.8946 22 6 8.8487 7.6124 3.8302 23 7 9.8872 6.8040 3.8151 24 14 8.6346 8.8317 5.2291 25 1 7.7446 8.2465 6.2639 26 1 9.9589 9.1344 5.8290 27 1 8.0300 10.0834 4.7067 28 6 7.1864 6.4932 0.6403 29 6 7.9102 5.6660 -0.4369 30 1 7.6741 6.0672 -1.4225 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.9990 3.1540 1.3076 37 1 0.5489 2.1252 1.3970 38 1 2.0699 1.5874 2.1492 39 1 3.7326 3.4509 -0.0805 40 1 6.1099 2.0740 0.5756 41 1 5.9629 2.1269 -1.1975 42 1 7.9928 2.3647 0.2614 43 1 8.4372 2.7502 -1.4120 44 1 10.4883 2.7380 -0.2902 45 1 9.8137 3.5346 1.1459 46 1 10.2656 6.9200 1.5337 47 1 9.6143 5.3006 1.9160 48 1 10.5415 6.8416 4.5301 49 1 6.7984 7.4126 0.2018 50 1 6.3678 5.9121 1.0648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219035979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:20 Heat of formation + Delta-G solvation = -75.768842 kcal Electronic energy + Delta-G solvation = -31116.620139 eV Core-core repulsion = 26952.257864 eV Total energy + Delta-G solvation = -4164.362275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.05877 -40.02140 -38.52712 -36.04651 -35.67764 -35.04685 -34.57913 -32.44300 -30.36425 -30.09930 -28.64078 -27.91931 -26.74027 -25.40141 -24.55933 -23.38585 -22.07652 -21.02385 -20.30435 -19.84394 -18.64618 -17.85925 -17.23562 -16.92739 -16.45440 -16.27687 -16.03857 -15.49324 -15.22900 -15.00740 -14.70401 -14.59122 -14.39710 -14.01215 -13.78301 -13.70290 -13.42830 -13.21253 -12.84864 -12.70971 -12.43039 -12.36509 -12.17743 -12.05281 -11.90435 -11.84388 -11.48156 -11.08818 -11.07576 -10.94834 -10.92355 -10.72926 -10.62857 -10.50578 -10.17053 -9.93955 -9.77897 -9.53038 -9.29345 -9.07060 -8.62553 -8.36964 -6.80069 -5.77447 -3.10606 2.45453 2.55122 2.64978 3.21532 3.38478 3.43935 3.46056 4.00901 4.27546 4.42813 4.47866 4.53206 4.65059 4.77081 4.95569 5.02873 5.05940 5.10387 5.16119 5.17443 5.21917 5.30331 5.34294 5.35334 5.51337 5.55302 5.61474 5.62664 5.65394 5.72075 5.76227 5.80034 5.88555 5.99072 6.03512 6.08200 6.14825 6.15964 6.43864 6.74317 7.06251 7.25848 7.34625 7.35985 7.41090 7.69846 7.79048 8.03994 8.10558 8.23909 9.16681 9.78282 10.42793 11.35330 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003020 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.138983 B = 9268.773701 C =10769.649059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.098 0.902 5 C -0.149 4.149 6 C 0.519 3.481 7 O -0.544 6.544 8 N -0.716 5.716 9 C 0.101 3.899 10 C 0.502 3.498 11 O -0.522 6.522 12 N -0.581 5.581 13 C 0.072 3.928 14 C 0.057 3.943 15 O -0.369 6.369 16 C 0.067 3.933 17 H 0.114 0.886 18 C 0.152 3.848 19 N -0.601 5.601 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.124 3.876 29 C 0.112 3.888 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.253 0.747 49 H 0.033 0.967 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 -12.156 -10.829 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.130 4.130 4 H 0.116 0.884 5 C -0.206 4.206 6 C 0.306 3.694 7 O -0.421 6.421 8 N -0.372 5.372 9 C -0.027 4.027 10 C 0.289 3.711 11 O -0.399 6.399 12 N -0.314 5.314 13 C -0.051 4.051 14 C -0.020 4.020 15 O -0.286 6.286 16 C 0.008 3.992 17 H 0.131 0.869 18 C 0.026 3.974 19 N -0.329 5.329 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.002 4.002 29 C 0.008 3.992 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.629 -12.323 -10.767 19.513 hybrid contribution -0.335 0.950 1.000 1.419 sum -10.964 -11.373 -9.768 18.573 Atomic orbital electron populations 1.21850 0.95459 1.01878 1.01953 1.21346 0.95357 0.94078 1.03508 1.21343 0.91272 0.99530 1.00873 0.88381 1.21862 1.02424 1.00654 0.95670 1.20718 0.90175 0.83073 0.75460 1.90692 1.70380 1.31408 1.49635 1.45785 1.06434 1.10052 1.74901 1.21145 0.82375 0.94794 1.04349 1.20465 0.82744 0.90903 0.76997 1.90674 1.55196 1.45461 1.48599 1.46618 1.05761 1.06619 1.72444 1.21723 0.92838 0.88274 1.02276 1.22206 0.93420 0.86389 0.99987 1.86862 1.50600 1.14857 1.76275 1.23018 0.87556 0.87761 1.00831 0.86870 1.21681 0.89750 0.98515 0.87420 1.44233 1.05166 1.61471 1.22040 1.18983 1.03262 1.20306 0.93054 0.90525 1.24835 0.98035 0.99458 0.98010 1.69944 1.14081 1.38622 1.33950 0.86155 0.76824 0.80885 0.81983 1.21512 1.21578 1.20668 1.21792 0.93502 0.95895 0.88989 1.21614 0.97231 0.80261 1.00087 0.90952 0.92703 0.92484 0.92336 0.91250 0.91153 0.91759 0.91057 0.91930 0.74924 0.88411 0.88459 0.89726 0.91247 0.87624 0.91955 0.91871 0.94174 0.93674 0.94906 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.10 -0.89 4.75 -26.73 -0.13 -1.02 16 3 C -0.11 -0.95 2.72 -91.77 -0.25 -1.20 16 4 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -1.18 8.84 37.16 0.33 -0.85 16 6 C 0.52 6.16 7.15 -10.99 -0.08 6.08 16 7 O -0.54 -8.11 15.92 5.56 0.09 -8.02 16 8 N -0.72 -8.42 5.42 -61.47 -0.33 -8.76 16 9 C 0.10 1.22 4.73 -5.19 -0.02 1.20 16 10 C 0.50 7.60 7.11 -10.98 -0.08 7.52 16 11 O -0.52 -9.26 12.69 5.56 0.07 -9.19 16 12 N -0.58 -8.98 3.09 -169.13 -0.52 -9.51 16 13 C 0.07 0.89 5.85 -5.49 -0.03 0.85 16 14 C 0.06 0.79 6.73 36.54 0.25 1.04 16 15 O -0.37 -6.25 10.25 -34.36 -0.35 -6.60 16 16 C 0.07 1.26 3.91 -26.27 -0.10 1.16 16 17 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 18 C 0.15 3.62 4.99 -3.21 -0.02 3.60 16 19 N -0.60 -15.43 3.39 -171.42 -0.58 -16.01 16 20 C -0.23 -6.41 10.21 -15.06 -0.15 -6.57 16 21 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 22 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 23 N -0.92 -26.84 10.67 55.49 0.59 -26.25 16 24 Si 0.91 22.15 29.56 -169.99 -5.03 17.13 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.12 2.71 6.06 -3.42 -0.02 2.69 16 29 C 0.11 2.01 3.34 -68.67 -0.23 1.78 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 6.56 -51.93 -0.34 0.00 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 37 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 38 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.41 4.71 6.85 -40.82 -0.28 4.43 16 40 H 0.10 1.18 7.12 -51.93 -0.37 0.81 16 41 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 42 H 0.08 0.89 6.33 -51.92 -0.33 0.56 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 46 H 0.06 1.68 7.33 -51.93 -0.38 1.30 16 47 H 0.04 1.05 6.09 -51.93 -0.32 0.74 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 1.44 5.19 -51.93 -0.27 1.17 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -33.70 383.74 -8.53 -42.23 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.98 Total: 3.82 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -0.27 Total: 15.37 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.84 Total: -60.53 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.19 Total: -23.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.70 -8.53 -42.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219035979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.537 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds