Wall clock time and date at job start Tue Mar 31 2020 23:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09001 * 109.47052 * 305.00275 * 3 2 1 5 5 C 1.53000 * 109.47016 * 65.00012 * 3 2 1 6 6 C 1.50700 * 109.47174 * 184.99977 * 3 2 1 7 7 O 1.21280 * 119.99772 * 0.02562 * 6 3 2 8 8 N 1.34769 * 119.99706 * 180.02562 * 6 3 2 9 9 C 1.46501 * 120.00047 * 180.02562 * 8 6 3 10 10 C 1.50702 * 109.47573 * 179.97438 * 9 8 6 11 11 O 1.21279 * 119.99600 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00003 * 180.02562 * 10 9 8 13 13 C 1.44957 * 117.32412 * 356.39550 * 12 10 9 14 14 C 1.51776 * 111.99475 * 203.54377 * 13 12 10 15 15 O 1.41316 * 111.63688 * 319.66824 * 14 13 12 16 16 C 1.40788 * 118.39684 * 56.77071 * 15 14 13 17 17 H 1.09006 * 109.34667 * 188.31415 * 16 15 14 18 18 C 1.54195 * 110.23077 * 67.70621 * 16 15 14 19 19 N 1.46880 * 106.39322 * 210.33929 * 18 16 15 20 20 C 1.36940 * 125.36390 * 197.86250 * 19 18 16 21 21 H 1.07994 * 120.00245 * 169.27832 * 20 19 18 22 22 C 1.38814 * 119.99585 * 349.27820 * 20 19 18 23 23 N 1.31617 * 120.00774 * 350.24258 * 22 20 19 24 24 Si 1.86800 * 119.99432 * 170.24400 * 22 20 19 25 25 H 1.48504 * 109.47271 * 84.92953 * 24 22 20 26 26 H 1.48508 * 109.47148 * 204.92416 * 24 22 20 27 27 H 1.48496 * 109.47702 * 324.92819 * 24 22 20 28 28 C 1.46782 * 109.26785 * 17.83475 * 19 18 16 29 29 C 1.44542 * 117.32165 * 176.65838 * 12 10 9 30 30 H 1.09000 * 109.48550 * 285.85100 * 29 12 10 31 31 H 1.08999 * 109.46847 * 60.00402 * 1 2 3 32 32 H 1.09006 * 109.46580 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46992 * 299.99733 * 1 2 3 34 34 H 1.09005 * 109.47092 * 120.00258 * 2 1 3 35 35 H 1.09000 * 109.47438 * 240.00026 * 2 1 3 36 36 H 1.08997 * 109.47133 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47484 * 300.00406 * 5 3 2 38 38 H 1.09008 * 109.47247 * 59.99935 * 5 3 2 39 39 H 0.97004 * 120.00623 * 359.97438 * 8 6 3 40 40 H 1.09001 * 109.47182 * 299.99967 * 9 8 6 41 41 H 1.09000 * 109.47174 * 59.99623 * 9 8 6 42 42 H 1.09007 * 108.99739 * 324.33214 * 13 12 10 43 43 H 1.08996 * 109.00255 * 83.09156 * 13 12 10 44 44 H 1.09001 * 109.15334 * 199.01668 * 14 13 12 45 45 H 1.08999 * 108.82297 * 80.10641 * 14 13 12 46 46 H 1.08996 * 110.07865 * 91.10140 * 18 16 15 47 47 H 1.09007 * 110.06850 * 329.56571 * 18 16 15 48 48 H 0.96992 * 120.00137 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.82725 * 239.35537 * 28 19 18 50 50 H 1.08996 * 109.89756 * 118.44039 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3952 -0.2046 8 7 4.2149 2.6118 -0.1448 9 6 5.6749 2.6136 -0.2657 10 6 6.1773 4.0345 -0.2656 11 8 5.3929 4.9549 -0.1740 12 7 7.4981 4.2822 -0.3683 13 6 8.3894 3.1393 -0.3950 14 6 9.7923 3.5019 0.0566 15 8 10.1949 4.7578 -0.4511 16 6 9.3971 5.8822 -0.1658 17 1 9.7548 6.7347 -0.7433 18 6 9.4597 6.2125 1.3391 19 7 8.1655 6.8146 1.6855 20 6 7.9125 7.5591 2.8067 21 1 6.9847 8.1047 2.8946 22 6 8.8487 7.6124 3.8302 23 7 9.8872 6.8040 3.8151 24 14 8.6346 8.8317 5.2291 25 1 7.7446 8.2465 6.2639 26 1 9.9589 9.1344 5.8290 27 1 8.0300 10.0834 4.7067 28 6 7.1864 6.4932 0.6403 29 6 7.9102 5.6660 -0.4369 30 1 7.6741 6.0672 -1.4225 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.9990 3.1540 1.3076 37 1 0.5489 2.1252 1.3970 38 1 2.0699 1.5874 2.1492 39 1 3.7326 3.4509 -0.0805 40 1 6.1099 2.0740 0.5756 41 1 5.9629 2.1269 -1.1975 42 1 7.9928 2.3647 0.2614 43 1 8.4372 2.7502 -1.4120 44 1 10.4883 2.7380 -0.2902 45 1 9.8137 3.5346 1.1459 46 1 10.2656 6.9200 1.5337 47 1 9.6143 5.3006 1.9160 48 1 10.5415 6.8416 4.5301 49 1 6.7984 7.4126 0.2018 50 1 6.3678 5.9121 1.0648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219035979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:18 Heat of formation + Delta-G solvation = -100.359584 kcal Electronic energy + Delta-G solvation = -31117.686474 eV Core-core repulsion = 26952.257864 eV Total energy + Delta-G solvation = -4165.428609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.33610 -41.02693 -39.81859 -37.70199 -36.43224 -36.30332 -35.64317 -34.32000 -31.78085 -31.07718 -29.78948 -29.55154 -28.09691 -26.50530 -25.98760 -24.72375 -23.11646 -22.37759 -21.63832 -20.88379 -19.97065 -19.17357 -18.64578 -18.37131 -17.68765 -17.46118 -17.11972 -16.76675 -16.43856 -16.27304 -16.20246 -15.73457 -15.55612 -15.35541 -15.13830 -14.76784 -14.42778 -14.41506 -14.22259 -14.00280 -13.77238 -13.53940 -13.37592 -13.04474 -12.96928 -12.85765 -12.79557 -12.56425 -12.52479 -12.42977 -12.19723 -12.16451 -11.93923 -11.71679 -11.69001 -11.57812 -10.95349 -10.86270 -10.73389 -10.50585 -10.26058 -9.66149 -8.88339 -7.93170 -5.29191 1.33385 1.42680 1.44512 1.53584 1.54651 1.56989 2.22400 2.45184 2.72486 3.14754 3.25637 3.48084 3.66492 3.69354 3.75702 3.85958 3.89165 3.97755 4.03088 4.12503 4.21398 4.27160 4.36260 4.41444 4.43351 4.47771 4.52707 4.63068 4.71257 4.72879 4.84300 4.95000 4.99753 5.02124 5.03245 5.12151 5.16719 5.24698 5.33390 5.37793 5.45043 5.51405 5.53352 5.58565 6.08120 6.13239 6.37480 6.42089 6.90229 7.03902 7.12548 7.70110 8.33182 9.17638 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003020 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.138983 B = 9268.773701 C =10769.649059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.104 4.104 4 H 0.119 0.881 5 C -0.146 4.146 6 C 0.517 3.483 7 O -0.577 6.577 8 N -0.716 5.716 9 C 0.108 3.892 10 C 0.500 3.500 11 O -0.553 6.553 12 N -0.587 5.587 13 C 0.068 3.932 14 C 0.050 3.950 15 O -0.371 6.371 16 C 0.085 3.915 17 H 0.128 0.872 18 C 0.162 3.838 19 N -0.620 5.620 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.271 1.271 28 C 0.124 3.876 29 C 0.124 3.876 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.415 0.585 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.148 0.852 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.010 0.990 48 H 0.249 0.751 49 H 0.029 0.971 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 -12.987 -12.203 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.125 4.125 4 H 0.137 0.863 5 C -0.203 4.203 6 C 0.306 3.694 7 O -0.456 6.456 8 N -0.371 5.371 9 C -0.019 4.019 10 C 0.289 3.711 11 O -0.431 6.431 12 N -0.320 5.320 13 C -0.054 4.054 14 C -0.026 4.026 15 O -0.288 6.288 16 C 0.025 3.975 17 H 0.145 0.855 18 C 0.037 3.963 19 N -0.347 5.347 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.196 1.196 28 C -0.001 4.001 29 C 0.019 3.981 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.166 0.834 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.028 0.972 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.798 -13.171 -12.164 21.462 hybrid contribution 0.027 1.161 1.449 1.857 sum -11.771 -12.010 -10.715 19.940 Atomic orbital electron populations 1.21824 0.93608 1.02487 1.02775 1.21319 0.96895 0.93625 1.02272 1.21401 0.89006 1.00063 1.02048 0.86303 1.21859 1.03676 1.00075 0.94729 1.21278 0.91383 0.82374 0.74414 1.90675 1.71281 1.32424 1.51261 1.45847 1.06357 1.10244 1.74623 1.21139 0.82659 0.92554 1.05546 1.20938 0.82335 0.91832 0.75987 1.90657 1.55903 1.46679 1.49906 1.46740 1.06561 1.06343 1.72389 1.22004 0.91037 0.87387 1.04940 1.22519 0.95866 0.85925 0.98336 1.86871 1.50592 1.15400 1.75907 1.22718 0.88617 0.89280 0.96849 0.85494 1.21445 0.87996 0.95905 0.90994 1.44496 1.06784 1.61255 1.22211 1.19308 1.03335 1.20773 0.94220 0.90727 1.25665 0.97860 1.01231 1.00551 1.70144 1.14701 1.39941 1.34515 0.85120 0.76606 0.78895 0.78820 1.21069 1.21621 1.19586 1.21840 0.92864 0.96266 0.89147 1.21351 0.95774 0.81577 0.99406 0.88786 0.91729 0.92072 0.91602 0.92682 0.92263 0.92049 0.89028 0.93080 0.74682 0.88109 0.86255 0.87860 0.87484 0.83414 0.95121 0.95609 0.97191 0.94168 0.95268 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 71.98 0.70 -0.92 16 2 C -0.10 -1.63 4.75 30.60 0.15 -1.49 16 3 C -0.10 -1.65 2.72 -11.54 -0.03 -1.68 16 4 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 5 C -0.15 -2.10 8.84 71.98 0.64 -1.46 16 6 C 0.52 11.65 7.15 87.66 0.63 12.28 16 7 O -0.58 -16.67 15.92 -3.03 -0.05 -16.72 16 8 N -0.72 -15.87 5.42 -466.79 -2.53 -18.40 16 9 C 0.11 2.42 4.73 85.63 0.40 2.82 16 10 C 0.50 14.45 7.11 87.66 0.62 15.08 16 11 O -0.55 -19.26 12.69 -3.03 -0.04 -19.30 16 12 N -0.59 -17.13 3.09 -807.39 -2.50 -19.63 16 13 C 0.07 1.47 5.85 86.27 0.51 1.98 16 14 C 0.05 1.29 6.73 71.58 0.48 1.77 16 15 O -0.37 -12.03 10.25 -145.85 -1.50 -13.52 16 16 C 0.08 3.14 3.91 30.89 0.12 3.26 16 17 H 0.13 4.32 8.14 -2.38 -0.02 4.30 16 18 C 0.16 8.02 4.99 86.71 0.43 8.45 16 19 N -0.62 -32.79 3.39 -696.25 -2.36 -35.15 16 20 C -0.25 -14.32 10.21 84.03 0.86 -13.46 16 21 H 0.07 4.22 7.85 -2.91 -0.02 4.20 16 22 C -0.06 -3.42 5.40 84.86 0.46 -2.96 16 23 N -0.95 -57.13 10.67 21.65 0.23 -56.90 16 24 Si 0.98 46.35 29.56 68.60 2.03 48.38 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 C 0.12 5.49 6.06 86.63 0.52 6.02 16 29 C 0.12 4.32 3.34 45.55 0.15 4.47 16 30 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.62 6.56 -2.39 -0.02 0.60 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.07 7.95 -2.39 -0.02 1.05 16 36 H 0.06 0.92 7.56 -2.39 -0.02 0.91 16 37 H 0.09 0.95 6.57 -2.39 -0.02 0.93 16 38 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.41 9.03 6.85 -92.71 -0.64 8.39 16 40 H 0.10 2.24 7.12 -2.39 -0.02 2.22 16 41 H 0.12 2.19 8.09 -2.39 -0.02 2.17 16 42 H 0.10 1.87 6.33 -2.38 -0.02 1.85 16 43 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.03 0.99 6.73 -2.39 -0.02 0.97 16 46 H 0.03 1.43 7.33 -2.39 -0.02 1.41 16 47 H 0.01 0.56 6.09 -2.38 -0.01 0.54 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.05 2.24 5.19 -2.39 -0.01 2.23 16 Total: -1.00 -76.03 383.74 0.24 -75.79 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.32 Total: 21.32 kcal Atomic # 6 Polarization: 27.50 SS G_CDS: 6.64 Total: 34.14 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -7.15 Total: -130.08 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -1.58 Total: -49.54 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.03 0.24 -75.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219035979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.570 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds