Wall clock time and date at job start Tue Mar 31 2020 23:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 H 1.09002 * 109.47107 * 54.99031 * 3 2 1 5 5 C 1.53004 * 109.46592 * 294.99711 * 3 2 1 6 6 C 1.50692 * 109.47177 * 174.99634 * 3 2 1 7 7 O 1.21275 * 120.00648 * 359.97438 * 6 3 2 8 8 N 1.34779 * 119.99834 * 179.97438 * 6 3 2 9 9 C 1.46504 * 119.99844 * 180.02562 * 8 6 3 10 10 C 1.50705 * 109.46731 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00533 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99643 * 179.97438 * 10 9 8 13 13 C 1.44964 * 117.32296 * 356.40343 * 12 10 9 14 14 C 1.51780 * 111.99542 * 203.53903 * 13 12 10 15 15 O 1.41324 * 111.63306 * 319.67039 * 14 13 12 16 16 C 1.40785 * 118.40365 * 56.76859 * 15 14 13 17 17 H 1.08996 * 109.35153 * 188.31428 * 16 15 14 18 18 C 1.54193 * 110.22991 * 67.69868 * 16 15 14 19 19 N 1.46874 * 106.39751 * 210.34059 * 18 16 15 20 20 C 1.36942 * 125.36396 * 197.86892 * 19 18 16 21 21 H 1.08003 * 119.99680 * 169.28050 * 20 19 18 22 22 C 1.38812 * 119.99967 * 349.27517 * 20 19 18 23 23 N 1.31615 * 119.99853 * 350.24932 * 22 20 19 24 24 Si 1.86798 * 119.99655 * 170.24493 * 22 20 19 25 25 H 1.48502 * 109.47214 * 84.93297 * 24 22 20 26 26 H 1.48502 * 109.47172 * 204.93310 * 24 22 20 27 27 H 1.48502 * 109.47470 * 324.93244 * 24 22 20 28 28 C 1.46784 * 109.27143 * 17.84174 * 19 18 16 29 29 C 1.44539 * 117.32121 * 176.65722 * 12 10 9 30 30 H 1.09006 * 109.49023 * 285.85565 * 29 12 10 31 31 H 1.09001 * 109.47285 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47276 * 300.00586 * 1 2 3 33 33 H 1.09006 * 109.46935 * 60.00355 * 1 2 3 34 34 H 1.09005 * 109.46800 * 119.99111 * 2 1 3 35 35 H 1.08996 * 109.47797 * 239.99477 * 2 1 3 36 36 H 1.08997 * 109.47387 * 60.00332 * 5 3 2 37 37 H 1.09001 * 109.46660 * 180.02562 * 5 3 2 38 38 H 1.08993 * 109.47039 * 299.99327 * 5 3 2 39 39 H 0.96997 * 120.00092 * 359.97438 * 8 6 3 40 40 H 1.08997 * 109.47322 * 299.99589 * 9 8 6 41 41 H 1.08996 * 109.47015 * 60.00597 * 9 8 6 42 42 H 1.09005 * 108.99431 * 324.32350 * 13 12 10 43 43 H 1.08995 * 109.00002 * 83.09150 * 13 12 10 44 44 H 1.08995 * 109.15277 * 199.01915 * 14 13 12 45 45 H 1.09003 * 108.81879 * 80.09666 * 14 13 12 46 46 H 1.09002 * 110.06744 * 91.10616 * 18 16 15 47 47 H 1.09000 * 110.07267 * 329.57663 * 18 16 15 48 48 H 0.97001 * 119.99549 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.82911 * 239.35990 * 28 19 18 50 50 H 1.08993 * 109.90336 * 118.43468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5419 1.4443 0.1239 7 8 4.1450 0.3953 0.2048 8 7 4.2149 2.6118 0.1449 9 6 5.6750 2.6135 0.2648 10 6 6.1774 4.0344 0.2636 11 8 5.3931 4.9549 0.1722 12 7 7.4983 4.2821 0.3653 13 6 8.3763 3.1440 0.5530 14 6 9.6876 3.5394 1.2071 15 8 10.1743 4.7652 0.6993 16 6 9.3460 5.9006 0.7826 17 1 9.7980 6.7192 0.2226 18 6 9.1617 6.3193 2.2551 19 7 7.8312 6.9345 2.3477 20 6 7.4009 7.7427 3.3661 21 1 6.4739 8.2880 3.2677 22 6 8.1562 7.8609 4.5247 23 7 9.1790 7.0580 4.7283 24 14 7.7208 9.1596 5.7948 25 1 6.6699 8.6322 6.7019 26 1 8.9299 9.5038 6.5854 27 1 7.2165 10.3753 5.1071 28 6 7.0358 6.5472 1.1765 29 6 7.9228 5.6614 0.2838 30 1 7.8541 6.0026 -0.7492 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 0.5490 2.1252 -1.3971 37 1 1.9990 3.1540 -1.3077 38 1 2.0700 1.5874 -2.1491 39 1 3.7326 3.4509 0.0798 40 1 5.9637 2.1265 1.1962 41 1 6.1093 2.0744 -0.5771 42 1 7.8734 2.4076 1.1799 43 1 8.5889 2.6959 -0.4175 44 1 10.4273 2.7598 1.0251 45 1 9.5296 3.6365 2.2812 46 1 9.9281 7.0411 2.5374 47 1 9.2149 5.4440 2.9024 48 1 9.7070 7.1409 5.5378 49 1 6.7298 7.4372 0.6266 50 1 6.1557 5.9882 1.4941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219035981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:23 Heat of formation + Delta-G solvation = -75.700361 kcal Electronic energy + Delta-G solvation = -31082.735243 eV Core-core repulsion = 26918.375938 eV Total energy + Delta-G solvation = -4164.359305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.05828 -40.02392 -38.52707 -36.04613 -35.68514 -35.04616 -34.57969 -32.44219 -30.37397 -30.09919 -28.64606 -27.91909 -26.74404 -25.41776 -24.55837 -23.38551 -22.07836 -21.02234 -20.30402 -19.84865 -18.65356 -17.85040 -17.22191 -16.94953 -16.42935 -16.31876 -16.00450 -15.56370 -15.21711 -14.94404 -14.71128 -14.60916 -14.40845 -14.02551 -13.79657 -13.61192 -13.55928 -13.16939 -12.80877 -12.77373 -12.41826 -12.39791 -12.17968 -12.04547 -11.93544 -11.84213 -11.48088 -11.09683 -11.07715 -10.95361 -10.92274 -10.72910 -10.62768 -10.50562 -10.16964 -9.94340 -9.77804 -9.53010 -9.29344 -9.06917 -8.62482 -8.36900 -6.79971 -5.77400 -3.10529 2.45739 2.54674 2.65148 3.21375 3.38592 3.44010 3.46135 4.00898 4.27510 4.42100 4.47881 4.52561 4.63617 4.77082 4.95332 5.01838 5.06750 5.09635 5.15755 5.17526 5.20891 5.28158 5.34617 5.34928 5.51434 5.53795 5.60138 5.61998 5.65461 5.67493 5.76264 5.80167 5.88596 5.96807 6.03458 6.07631 6.14873 6.15936 6.43926 6.74370 7.06401 7.25870 7.34569 7.36037 7.41159 7.69894 7.79100 8.03947 8.10576 8.24006 9.16765 9.78359 10.42860 11.35381 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.002938 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.587853 B = 9527.760959 C =10838.169847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.147 4.147 6 C 0.519 3.481 7 O -0.544 6.544 8 N -0.716 5.716 9 C 0.101 3.899 10 C 0.502 3.498 11 O -0.522 6.522 12 N -0.581 5.581 13 C 0.072 3.928 14 C 0.057 3.943 15 O -0.369 6.369 16 C 0.068 3.932 17 H 0.114 0.886 18 C 0.152 3.848 19 N -0.601 5.601 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.124 3.876 29 C 0.112 3.888 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.413 0.587 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.253 0.747 49 H 0.033 0.967 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.066 -12.852 -12.465 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.118 0.882 5 C -0.204 4.204 6 C 0.306 3.694 7 O -0.421 6.421 8 N -0.372 5.372 9 C -0.027 4.027 10 C 0.289 3.711 11 O -0.399 6.399 12 N -0.314 5.314 13 C -0.051 4.051 14 C -0.020 4.020 15 O -0.286 6.286 16 C 0.008 3.992 17 H 0.131 0.869 18 C 0.026 3.974 19 N -0.329 5.329 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 C -0.002 4.002 29 C 0.008 3.992 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.251 0.749 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.718 -13.014 -12.337 19.939 hybrid contribution -0.496 1.006 0.932 1.459 sum -9.214 -12.007 -11.405 18.951 Atomic orbital electron populations 1.21850 0.95452 1.01885 1.01965 1.21342 0.95364 0.94056 1.03500 1.21351 0.91324 0.99574 1.00898 0.88238 1.21846 1.02440 1.00510 0.95649 1.20709 0.90151 0.83076 0.75466 1.90691 1.70357 1.31432 1.49626 1.45786 1.06446 1.10048 1.74899 1.21145 0.82363 0.94773 1.04373 1.20468 0.82642 0.90884 0.77121 1.90673 1.55051 1.45339 1.48859 1.46619 1.06194 1.07032 1.71601 1.21725 0.93354 0.88314 1.01717 1.22208 0.94041 0.87028 0.98723 1.86862 1.43071 1.16367 1.82300 1.23017 0.88031 0.87352 1.00759 0.86869 1.21679 0.88781 0.98069 0.88836 1.44233 1.09629 1.57318 1.21732 1.18985 1.06079 1.17656 0.92889 0.90526 1.24835 0.98652 0.99455 0.97404 1.69949 1.21042 1.38498 1.27107 0.86151 0.77160 0.81303 0.81220 1.21513 1.21577 1.20667 1.21796 0.94746 0.95112 0.88533 1.21619 0.97184 0.80342 1.00051 0.90954 0.92478 0.92622 0.92405 0.91082 0.91325 0.91059 0.91854 0.92070 0.74927 0.88406 0.88464 0.89725 0.91251 0.87621 0.91951 0.91875 0.94173 0.93678 0.94906 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.10 -0.89 4.75 -26.73 -0.13 -1.02 16 3 C -0.11 -0.96 2.72 -91.77 -0.25 -1.21 16 4 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -1.05 8.84 37.16 0.33 -0.72 16 6 C 0.52 6.16 7.15 -10.99 -0.08 6.08 16 7 O -0.54 -8.11 15.92 5.56 0.09 -8.02 16 8 N -0.72 -8.42 5.42 -61.47 -0.33 -8.76 16 9 C 0.10 1.22 4.73 -5.19 -0.02 1.20 16 10 C 0.50 7.60 7.12 -10.98 -0.08 7.52 16 11 O -0.52 -9.26 12.69 5.56 0.07 -9.19 16 12 N -0.58 -8.99 3.09 -169.11 -0.52 -9.51 16 13 C 0.07 0.89 5.86 -5.48 -0.03 0.85 16 14 C 0.06 0.79 6.73 36.54 0.25 1.04 16 15 O -0.37 -6.25 10.25 -34.36 -0.35 -6.60 16 16 C 0.07 1.26 3.91 -26.27 -0.10 1.16 16 17 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 18 C 0.15 3.62 4.99 -3.21 -0.02 3.60 16 19 N -0.60 -15.45 3.39 -171.42 -0.58 -16.03 16 20 C -0.23 -6.42 10.21 -15.06 -0.15 -6.57 16 21 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16 22 C -0.01 -0.19 5.40 -17.43 -0.09 -0.29 16 23 N -0.92 -26.86 10.67 55.49 0.59 -26.27 16 24 Si 0.91 22.17 29.56 -169.99 -5.03 17.15 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.12 2.71 6.06 -3.42 -0.02 2.69 16 29 C 0.11 2.01 3.34 -68.67 -0.23 1.78 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 34 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 37 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.41 4.72 6.85 -40.82 -0.28 4.44 16 40 H 0.10 1.18 7.11 -51.93 -0.37 0.81 16 41 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 42 H 0.08 0.89 6.33 -51.93 -0.33 0.56 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 46 H 0.06 1.68 7.34 -51.93 -0.38 1.30 16 47 H 0.04 1.05 6.09 -51.93 -0.32 0.74 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.06 1.44 5.18 -51.93 -0.27 1.18 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -33.74 383.73 -8.53 -42.27 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.97 Total: 3.69 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -0.27 Total: 15.48 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.84 Total: -60.57 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.19 Total: -23.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.74 -8.53 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219035981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.428 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds