Wall clock time and date at job start Tue Mar 31 2020 23:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 H 1.09002 * 109.47107 * 54.99031 * 3 2 1 5 5 C 1.53004 * 109.46592 * 294.99711 * 3 2 1 6 6 C 1.50692 * 109.47177 * 174.99634 * 3 2 1 7 7 O 1.21275 * 120.00648 * 359.97438 * 6 3 2 8 8 N 1.34779 * 119.99834 * 179.97438 * 6 3 2 9 9 C 1.46504 * 119.99844 * 180.02562 * 8 6 3 10 10 C 1.50705 * 109.46731 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00533 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99643 * 179.97438 * 10 9 8 13 13 C 1.44964 * 117.32296 * 356.40343 * 12 10 9 14 14 C 1.51780 * 111.99542 * 203.53903 * 13 12 10 15 15 O 1.41324 * 111.63306 * 319.67039 * 14 13 12 16 16 C 1.40785 * 118.40365 * 56.76859 * 15 14 13 17 17 H 1.08996 * 109.35153 * 188.31428 * 16 15 14 18 18 C 1.54193 * 110.22991 * 67.69868 * 16 15 14 19 19 N 1.46874 * 106.39751 * 210.34059 * 18 16 15 20 20 C 1.36942 * 125.36396 * 197.86892 * 19 18 16 21 21 H 1.08003 * 119.99680 * 169.28050 * 20 19 18 22 22 C 1.38812 * 119.99967 * 349.27517 * 20 19 18 23 23 N 1.31615 * 119.99853 * 350.24932 * 22 20 19 24 24 Si 1.86798 * 119.99655 * 170.24493 * 22 20 19 25 25 H 1.48502 * 109.47214 * 84.93297 * 24 22 20 26 26 H 1.48502 * 109.47172 * 204.93310 * 24 22 20 27 27 H 1.48502 * 109.47470 * 324.93244 * 24 22 20 28 28 C 1.46784 * 109.27143 * 17.84174 * 19 18 16 29 29 C 1.44539 * 117.32121 * 176.65722 * 12 10 9 30 30 H 1.09006 * 109.49023 * 285.85565 * 29 12 10 31 31 H 1.09001 * 109.47285 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47276 * 300.00586 * 1 2 3 33 33 H 1.09006 * 109.46935 * 60.00355 * 1 2 3 34 34 H 1.09005 * 109.46800 * 119.99111 * 2 1 3 35 35 H 1.08996 * 109.47797 * 239.99477 * 2 1 3 36 36 H 1.08997 * 109.47387 * 60.00332 * 5 3 2 37 37 H 1.09001 * 109.46660 * 180.02562 * 5 3 2 38 38 H 1.08993 * 109.47039 * 299.99327 * 5 3 2 39 39 H 0.96997 * 120.00092 * 359.97438 * 8 6 3 40 40 H 1.08997 * 109.47322 * 299.99589 * 9 8 6 41 41 H 1.08996 * 109.47015 * 60.00597 * 9 8 6 42 42 H 1.09005 * 108.99431 * 324.32350 * 13 12 10 43 43 H 1.08995 * 109.00002 * 83.09150 * 13 12 10 44 44 H 1.08995 * 109.15277 * 199.01915 * 14 13 12 45 45 H 1.09003 * 108.81879 * 80.09666 * 14 13 12 46 46 H 1.09002 * 110.06744 * 91.10616 * 18 16 15 47 47 H 1.09000 * 110.07267 * 329.57663 * 18 16 15 48 48 H 0.97001 * 119.99549 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.82911 * 239.35990 * 28 19 18 50 50 H 1.08993 * 109.90336 * 118.43468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5419 1.4443 0.1239 7 8 4.1450 0.3953 0.2048 8 7 4.2149 2.6118 0.1449 9 6 5.6750 2.6135 0.2648 10 6 6.1774 4.0344 0.2636 11 8 5.3931 4.9549 0.1722 12 7 7.4983 4.2821 0.3653 13 6 8.3763 3.1440 0.5530 14 6 9.6876 3.5394 1.2071 15 8 10.1743 4.7652 0.6993 16 6 9.3460 5.9006 0.7826 17 1 9.7980 6.7192 0.2226 18 6 9.1617 6.3193 2.2551 19 7 7.8312 6.9345 2.3477 20 6 7.4009 7.7427 3.3661 21 1 6.4739 8.2880 3.2677 22 6 8.1562 7.8609 4.5247 23 7 9.1790 7.0580 4.7283 24 14 7.7208 9.1596 5.7948 25 1 6.6699 8.6322 6.7019 26 1 8.9299 9.5038 6.5854 27 1 7.2165 10.3753 5.1071 28 6 7.0358 6.5472 1.1765 29 6 7.9228 5.6614 0.2838 30 1 7.8541 6.0026 -0.7492 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 0.5490 2.1252 -1.3971 37 1 1.9990 3.1540 -1.3077 38 1 2.0700 1.5874 -2.1491 39 1 3.7326 3.4509 0.0798 40 1 5.9637 2.1265 1.1962 41 1 6.1093 2.0744 -0.5771 42 1 7.8734 2.4076 1.1799 43 1 8.5889 2.6959 -0.4175 44 1 10.4273 2.7598 1.0251 45 1 9.5296 3.6365 2.2812 46 1 9.9281 7.0411 2.5374 47 1 9.2149 5.4440 2.9024 48 1 9.7070 7.1409 5.5378 49 1 6.7298 7.4372 0.6266 50 1 6.1557 5.9882 1.4941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219035981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:22 Heat of formation + Delta-G solvation = -100.321706 kcal Electronic energy + Delta-G solvation = -31083.802904 eV Core-core repulsion = 26918.375938 eV Total energy + Delta-G solvation = -4165.426967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.33548 -41.02721 -39.81842 -37.70148 -36.42980 -36.30266 -35.64317 -34.31998 -31.78075 -31.07566 -29.78703 -29.55108 -28.09287 -26.50234 -25.98111 -24.72353 -23.11774 -22.37683 -21.63864 -20.88303 -19.97669 -19.17067 -18.63897 -18.37272 -17.65869 -17.50966 -17.09425 -16.76467 -16.50520 -16.27463 -16.13086 -15.74741 -15.51965 -15.42544 -15.08978 -14.77103 -14.46562 -14.40453 -14.20453 -14.00406 -13.73589 -13.58093 -13.35436 -13.04107 -12.96495 -12.85654 -12.79617 -12.56105 -12.51570 -12.42706 -12.19761 -12.16447 -11.93930 -11.71337 -11.68916 -11.58014 -10.95251 -10.86301 -10.73410 -10.50573 -10.26014 -9.66108 -8.88334 -7.93232 -5.29230 1.33383 1.42679 1.44535 1.53527 1.54554 1.57358 2.22232 2.45183 2.72470 3.14727 3.25614 3.48077 3.66686 3.69389 3.75727 3.86339 3.89136 3.98316 4.03073 4.12509 4.21321 4.27533 4.36284 4.41571 4.43228 4.47750 4.53737 4.63091 4.71263 4.74335 4.84311 4.96859 4.99762 5.02252 5.03926 5.12168 5.16600 5.24830 5.33348 5.38098 5.45034 5.51349 5.53422 5.58546 6.08127 6.13238 6.37495 6.42020 6.90241 7.03886 7.12509 7.70094 8.33146 9.17578 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.002938 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.587853 B = 9527.760959 C =10838.169847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.107 4.107 4 H 0.111 0.889 5 C -0.143 4.143 6 C 0.518 3.482 7 O -0.577 6.577 8 N -0.716 5.716 9 C 0.108 3.892 10 C 0.500 3.500 11 O -0.553 6.553 12 N -0.587 5.587 13 C 0.068 3.932 14 C 0.050 3.950 15 O -0.371 6.371 16 C 0.085 3.915 17 H 0.128 0.872 18 C 0.162 3.838 19 N -0.620 5.620 20 C -0.248 4.248 21 H 0.075 0.925 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.271 1.271 28 C 0.124 3.876 29 C 0.124 3.876 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.148 0.852 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.010 0.990 48 H 0.249 0.751 49 H 0.029 0.971 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 -13.754 -13.916 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.128 4.128 4 H 0.129 0.871 5 C -0.200 4.200 6 C 0.306 3.694 7 O -0.456 6.456 8 N -0.371 5.371 9 C -0.019 4.019 10 C 0.289 3.711 11 O -0.431 6.431 12 N -0.320 5.320 13 C -0.054 4.054 14 C -0.026 4.026 15 O -0.288 6.288 16 C 0.025 3.975 17 H 0.145 0.855 18 C 0.037 3.963 19 N -0.348 5.348 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.196 1.196 28 C -0.001 4.001 29 C 0.019 3.981 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.166 0.834 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.028 0.972 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.628 -13.933 -13.813 21.855 hybrid contribution -0.217 1.239 1.410 1.889 sum -9.845 -12.694 -12.403 20.295 Atomic orbital electron populations 1.21825 0.93660 1.02485 1.02744 1.21315 0.96855 0.93635 1.02280 1.21415 0.89013 1.00089 1.02295 0.87061 1.21839 1.03627 1.00136 0.94415 1.21269 0.91353 0.82378 0.74417 1.90673 1.71262 1.32451 1.51254 1.45848 1.06384 1.10233 1.74612 1.21139 0.82739 0.92592 1.05419 1.20940 0.82213 0.91811 0.76128 1.90656 1.55719 1.46559 1.50202 1.46741 1.07006 1.06738 1.71554 1.22006 0.91942 0.87428 1.03991 1.22522 0.96430 0.86682 0.97010 1.86871 1.43037 1.16792 1.82077 1.22717 0.89105 0.88749 0.96885 0.85494 1.21444 0.87096 0.95634 0.92170 1.44496 1.10949 1.57127 1.22179 1.19310 1.06182 1.18226 0.93929 0.90732 1.25667 0.98747 1.01488 0.99416 1.70149 1.21920 1.39847 1.27381 0.85117 0.76753 0.78976 0.78575 1.21076 1.21614 1.19585 1.21844 0.94755 0.95619 0.87912 1.21355 0.95347 0.81467 0.99936 0.88785 0.92048 0.92177 0.91237 0.92774 0.92136 0.89203 0.91824 0.92411 0.74689 0.88063 0.86301 0.87851 0.87493 0.83412 0.95117 0.95614 0.97188 0.94171 0.95265 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.67 71.98 0.70 -0.95 16 2 C -0.10 -1.64 4.75 30.59 0.15 -1.49 16 3 C -0.11 -1.71 2.72 -11.54 -0.03 -1.74 16 4 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 5 C -0.14 -1.76 8.84 71.98 0.64 -1.12 16 6 C 0.52 11.68 7.15 87.65 0.63 12.31 16 7 O -0.58 -16.69 15.92 -3.02 -0.05 -16.74 16 8 N -0.72 -15.88 5.42 -466.79 -2.53 -18.41 16 9 C 0.11 2.42 4.73 85.63 0.40 2.82 16 10 C 0.50 14.45 7.12 87.66 0.62 15.07 16 11 O -0.55 -19.26 12.69 -3.02 -0.04 -19.30 16 12 N -0.59 -17.13 3.09 -807.33 -2.50 -19.63 16 13 C 0.07 1.47 5.86 86.27 0.51 1.98 16 14 C 0.05 1.29 6.73 71.58 0.48 1.77 16 15 O -0.37 -12.03 10.25 -145.86 -1.50 -13.52 16 16 C 0.09 3.14 3.91 30.90 0.12 3.26 16 17 H 0.13 4.32 8.14 -2.39 -0.02 4.30 16 18 C 0.16 8.02 4.99 86.71 0.43 8.45 16 19 N -0.62 -32.81 3.39 -696.25 -2.36 -35.17 16 20 C -0.25 -14.34 10.21 84.03 0.86 -13.48 16 21 H 0.07 4.22 7.85 -2.91 -0.02 4.20 16 22 C -0.06 -3.43 5.40 84.86 0.46 -2.97 16 23 N -0.95 -57.15 10.67 21.65 0.23 -56.92 16 24 Si 0.98 46.37 29.56 68.60 2.03 48.40 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 28 C 0.12 5.49 6.06 86.63 0.52 6.01 16 29 C 0.12 4.32 3.34 45.56 0.15 4.47 16 30 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.61 6.57 -2.38 -0.02 0.59 16 34 H 0.05 1.04 7.95 -2.38 -0.02 1.02 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 0.78 6.56 -2.39 -0.02 0.77 16 37 H 0.06 0.79 7.56 -2.39 -0.02 0.77 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.41 9.04 6.85 -92.71 -0.64 8.40 16 40 H 0.10 2.24 7.11 -2.39 -0.02 2.23 16 41 H 0.12 2.19 8.09 -2.39 -0.02 2.17 16 42 H 0.10 1.87 6.33 -2.38 -0.02 1.85 16 43 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.03 0.99 6.73 -2.39 -0.02 0.97 16 46 H 0.03 1.43 7.34 -2.39 -0.02 1.41 16 47 H 0.01 0.56 6.09 -2.39 -0.01 0.54 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.05 2.24 5.18 -2.39 -0.01 2.23 16 Total: -1.00 -76.06 383.73 0.25 -75.81 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.32 Total: 21.09 kcal Atomic # 6 Polarization: 27.76 SS G_CDS: 6.64 Total: 34.40 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -7.15 Total: -130.14 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -1.58 Total: -49.56 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.06 0.25 -75.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219035981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.508 kcal (2) G-P(sol) polarization free energy of solvation -76.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds