Wall clock time and date at job start Tue Mar 31 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47590 * 2 1 4 4 C 1.53003 * 109.47019 * 120.00128 * 2 1 3 5 5 H 1.08998 * 109.46971 * 300.13706 * 4 2 1 6 6 C 1.50701 * 109.46941 * 180.14029 * 4 2 1 7 7 O 1.21278 * 120.00005 * 268.72002 * 6 4 2 8 8 N 1.34774 * 120.00013 * 88.72617 * 6 4 2 9 9 C 1.46498 * 119.99918 * 174.84540 * 8 6 4 10 10 H 1.08997 * 110.78211 * 36.78696 * 9 8 6 11 11 C 1.54325 * 110.72475 * 273.54536 * 9 8 6 12 12 N 1.47019 * 107.40643 * 219.52096 * 11 9 8 13 13 C 1.36935 * 125.64761 * 178.89853 * 12 11 9 14 14 H 1.07999 * 120.00239 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99533 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00279 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99688 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47076 * 90.00187 * 17 15 13 19 19 H 1.48499 * 109.47176 * 210.00032 * 17 15 13 20 20 H 1.48504 * 109.47161 * 330.00090 * 17 15 13 21 21 C 1.47425 * 108.70099 * 358.86261 * 12 11 9 22 22 C 1.54916 * 104.83226 * 24.12964 * 21 12 11 23 23 H 1.09006 * 111.00165 * 204.87970 * 22 21 12 24 24 O 1.42897 * 111.00464 * 81.06336 * 22 21 12 25 25 N 1.46493 * 109.47285 * 60.13804 * 4 2 1 26 26 C 1.46769 * 124.35425 * 239.72832 * 25 4 2 27 27 C 1.54659 * 105.38462 * 162.85381 * 26 25 4 28 28 C 1.54623 * 101.68531 * 25.76797 * 27 26 25 29 29 C 1.34427 * 124.34878 * 60.02262 * 25 4 2 30 30 O 1.21278 * 124.94049 * 0.43303 * 29 25 4 31 31 H 1.09004 * 109.46904 * 300.00088 * 1 2 3 32 32 H 1.08999 * 109.47176 * 59.99482 * 1 2 3 33 33 H 1.08998 * 109.47558 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47353 * 239.99733 * 2 1 3 35 35 H 1.08995 * 109.47228 * 178.59647 * 3 2 1 36 36 H 1.09003 * 109.46858 * 298.60121 * 3 2 1 37 37 H 1.09001 * 109.47138 * 58.59486 * 3 2 1 38 38 H 0.96997 * 120.00070 * 354.84872 * 8 6 4 39 39 H 1.09000 * 109.88121 * 100.02653 * 11 9 8 40 40 H 1.09001 * 109.87710 * 339.02096 * 11 9 8 41 41 H 0.96997 * 119.99527 * 180.02562 * 16 15 13 42 42 H 1.09001 * 110.36643 * 142.96744 * 21 12 11 43 43 H 1.09001 * 110.36928 * 265.17866 * 21 12 11 44 44 H 0.96695 * 114.00051 * 61.45548 * 24 22 21 45 45 H 1.09004 * 110.24309 * 281.98619 * 26 25 4 46 46 H 1.09000 * 110.24402 * 43.98067 * 26 25 4 47 47 H 1.08999 * 111.18856 * 267.59178 * 27 26 25 48 48 H 1.09002 * 110.81776 * 143.78086 * 27 26 25 49 49 H 1.09007 * 110.48644 * 216.31173 * 28 27 26 50 50 H 1.08995 * 110.60296 * 93.71793 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6746 -0.2089 2.1392 6 6 3.5470 -0.7183 1.2510 7 8 4.1558 -1.6377 0.7462 8 7 4.2181 0.3061 1.8136 9 6 5.6787 0.2564 1.9164 10 1 6.1122 -0.2203 1.0373 11 6 6.1109 -0.4763 3.2040 12 7 7.2681 0.2452 3.7532 13 6 7.9351 -0.0756 4.9053 14 1 7.6187 -0.9238 5.4942 15 6 9.0174 0.6902 5.3168 16 7 9.4021 1.7248 4.5999 17 14 9.9269 0.2531 6.8888 18 1 11.0305 -0.6900 6.5763 19 1 10.4873 1.4870 7.4959 20 1 8.9859 -0.3853 7.8440 21 6 7.5920 1.3706 2.8578 22 6 6.2680 1.6805 2.1155 23 1 6.4610 2.1623 1.1570 24 8 5.4032 2.4815 2.9234 25 7 1.5544 -2.1034 1.2476 26 6 0.7118 -2.6865 2.2984 27 6 0.1033 -3.9642 1.6745 28 6 1.1577 -4.3214 0.6015 29 6 1.8280 -3.0023 0.2862 30 8 2.5129 -2.7872 -0.6912 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1298 1.4425 0.0252 36 1 1.6974 1.9490 -0.9023 37 1 1.6564 1.9635 0.8771 38 1 3.7342 1.0763 2.1505 39 1 6.3914 -1.5032 2.9697 40 1 5.2939 -0.4709 3.9255 41 1 10.1585 2.2596 4.8873 42 1 7.9135 2.2360 3.4373 43 1 8.3674 1.0804 2.1488 44 1 5.7708 3.3449 3.1565 45 1 1.3162 -2.9396 3.1694 46 1 -0.0795 -1.9905 2.5769 47 1 -0.8641 -3.7571 1.2172 48 1 0.0198 -4.7566 2.4184 49 1 0.6748 -4.7260 -0.2881 50 1 1.8826 -5.0325 0.9977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221167285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:57 Heat of formation + Delta-G solvation = -82.871440 kcal Electronic energy + Delta-G solvation = -31732.444069 eV Core-core repulsion = 27567.773803 eV Total energy + Delta-G solvation = -4164.670266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94995 -39.28450 -37.79792 -36.39096 -35.77808 -34.70073 -33.88138 -31.87403 -31.64758 -28.77229 -27.77350 -27.58825 -27.05302 -26.40877 -24.38752 -22.14925 -21.30311 -20.96103 -20.53867 -19.71214 -18.94388 -17.59165 -17.12694 -16.95164 -16.48124 -16.19371 -15.50338 -15.19480 -14.84101 -14.64327 -14.44223 -14.14259 -14.04773 -13.72669 -13.40662 -13.20976 -13.14334 -12.98401 -12.89246 -12.75220 -12.57336 -12.42991 -12.34576 -11.80909 -11.71441 -11.36009 -11.31065 -11.26574 -11.22857 -11.06599 -10.95641 -10.85204 -10.58240 -10.32063 -10.03917 -9.84467 -9.76506 -9.49550 -9.26734 -8.70879 -8.65613 -8.51841 -6.85509 -5.70101 -3.09855 2.55115 2.79670 3.00301 3.38844 3.43667 3.45210 3.51770 4.22607 4.26389 4.46796 4.56016 4.60786 4.62707 4.69674 4.83563 4.93225 5.02665 5.14915 5.24115 5.33945 5.37344 5.40014 5.42912 5.44941 5.48309 5.50493 5.59233 5.64219 5.69396 5.73800 5.74732 5.90075 5.95503 6.07454 6.10689 6.12674 6.31507 6.44093 6.59211 6.71272 6.98647 7.13492 7.26784 7.55361 7.70653 7.87483 8.12945 8.30153 8.30868 8.57276 9.17573 9.78542 10.42239 11.35029 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.003070 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.848975 B = 9118.972304 C =10056.839531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.154 4.154 4 C 0.151 3.849 5 H 0.104 0.896 6 C 0.496 3.504 7 O -0.512 6.512 8 N -0.708 5.708 9 C 0.144 3.856 10 H 0.098 0.902 11 C 0.133 3.867 12 N -0.596 5.596 13 C -0.216 4.216 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.927 5.927 17 Si 0.917 3.083 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.126 3.874 22 C 0.069 3.931 23 H 0.058 0.942 24 O -0.562 6.562 25 N -0.611 5.611 26 C 0.103 3.897 27 C -0.129 4.129 28 C -0.156 4.156 29 C 0.520 3.480 30 O -0.499 6.499 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.025 0.975 40 H 0.028 0.972 41 H 0.252 0.748 42 H 0.115 0.885 43 H 0.022 0.978 44 H 0.380 0.620 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.278 -2.555 -6.779 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 C -0.212 4.212 4 C 0.044 3.956 5 H 0.122 0.878 6 C 0.279 3.721 7 O -0.386 6.386 8 N -0.362 5.362 9 C 0.039 3.961 10 H 0.116 0.884 11 C 0.006 3.994 12 N -0.323 5.323 13 C -0.344 4.344 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.576 5.576 17 Si 0.747 3.253 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.001 3.999 22 C 0.008 3.992 23 H 0.076 0.924 24 O -0.369 6.369 25 N -0.347 5.347 26 C -0.020 4.020 27 C -0.167 4.167 28 C -0.196 4.196 29 C 0.307 3.693 30 O -0.371 6.371 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.133 0.867 43 H 0.040 0.960 44 H 0.228 0.772 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.638 -3.532 -7.593 23.202 hybrid contribution 0.784 0.567 1.201 1.542 sum -20.854 -2.966 -6.392 22.013 Atomic orbital electron populations 1.21751 0.94215 1.01786 1.01802 1.21400 0.96527 0.96453 0.98009 1.21943 1.02188 0.94691 1.02392 1.20894 0.91595 0.82479 1.00642 0.87810 1.20807 0.89774 0.82908 0.78578 1.90785 1.69392 1.35296 1.43117 1.45898 1.07632 1.21432 1.61207 1.22127 0.79206 0.95497 0.99295 0.88396 1.21569 0.90956 0.94593 0.92291 1.44290 1.32491 1.30651 1.24837 1.19096 1.08128 1.09827 0.97394 0.90467 1.24756 0.98674 0.98004 0.99303 1.69717 1.29088 1.19769 1.39053 0.86032 0.79642 0.77137 0.82463 1.21624 1.21647 1.20718 1.22619 0.89995 0.95046 0.92279 1.23603 0.92930 0.89677 0.92972 0.92392 1.86203 1.45316 1.32233 1.73116 1.47967 1.52313 1.10370 1.24068 1.22140 0.93905 0.95266 0.90705 1.22589 0.98396 0.97258 0.98448 1.22331 0.99392 0.96848 1.01037 1.20714 0.80031 0.86060 0.82488 1.90740 1.36776 1.81094 1.28513 0.92619 0.92359 0.92654 0.89061 0.91639 0.91871 0.92141 0.75848 0.95702 0.95455 0.93723 0.86714 0.95991 0.77231 0.91050 0.90355 0.90035 0.89260 0.88379 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.04 37.16 0.34 -0.82 16 2 C -0.10 -1.15 2.36 -90.62 -0.21 -1.37 16 3 C -0.15 -1.53 8.54 37.16 0.32 -1.21 16 4 C 0.15 1.84 2.26 -69.08 -0.16 1.68 16 5 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 6 C 0.50 8.18 6.16 -10.99 -0.07 8.11 16 7 O -0.51 -10.78 13.64 -16.84 -0.23 -11.01 16 8 N -0.71 -11.31 4.07 -51.90 -0.21 -11.52 16 9 C 0.14 2.77 3.17 -65.96 -0.21 2.56 16 10 H 0.10 2.00 7.64 -51.93 -0.40 1.60 16 11 C 0.13 3.03 6.98 -3.06 -0.02 3.01 16 12 N -0.60 -15.52 3.39 -170.07 -0.58 -16.10 16 13 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 16 N -0.93 -26.50 10.09 55.49 0.56 -25.94 16 17 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.13 2.98 5.62 -2.53 -0.01 2.97 16 22 C 0.07 1.26 4.30 -24.44 -0.11 1.16 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 O -0.56 -9.43 12.23 -35.23 -0.43 -9.86 16 25 N -0.61 -7.16 2.04 -166.04 -0.34 -7.50 16 26 C 0.10 0.79 7.31 -3.02 -0.02 0.77 16 27 C -0.13 -0.77 7.19 -25.01 -0.18 -0.95 16 28 C -0.16 -1.42 6.86 -26.74 -0.18 -1.61 16 29 C 0.52 7.27 6.86 -10.85 -0.07 7.20 16 30 O -0.50 -9.33 14.48 -16.84 -0.24 -9.58 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.48 7.61 -51.93 -0.40 0.08 16 34 H 0.09 1.32 6.79 -51.93 -0.35 0.96 16 35 H 0.06 0.78 6.31 -51.93 -0.33 0.45 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.41 5.73 7.04 -40.82 -0.29 5.44 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.12 2.96 5.87 -51.93 -0.30 2.65 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.38 5.26 9.11 45.56 0.42 5.67 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -36.16 391.67 -8.96 -45.13 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.53 Total: 8.57 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -0.84 Total: 14.79 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.57 Total: -61.06 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.90 Total: -30.45 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.16 -8.96 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221167285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.745 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds