Wall clock time and date at job start Tue Mar 31 2020 22:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47590 * 2 1 4 4 C 1.53003 * 109.47019 * 120.00128 * 2 1 3 5 5 H 1.08998 * 109.46971 * 300.13706 * 4 2 1 6 6 C 1.50701 * 109.46941 * 180.14029 * 4 2 1 7 7 O 1.21278 * 120.00005 * 268.72002 * 6 4 2 8 8 N 1.34774 * 120.00013 * 88.72617 * 6 4 2 9 9 C 1.46498 * 119.99918 * 174.84540 * 8 6 4 10 10 H 1.08997 * 110.78211 * 36.78696 * 9 8 6 11 11 C 1.54325 * 110.72475 * 273.54536 * 9 8 6 12 12 N 1.47019 * 107.40643 * 219.52096 * 11 9 8 13 13 C 1.36935 * 125.64761 * 178.89853 * 12 11 9 14 14 H 1.07999 * 120.00239 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99533 * 180.02562 * 13 12 11 16 16 N 1.31619 * 120.00279 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99688 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47076 * 90.00187 * 17 15 13 19 19 H 1.48499 * 109.47176 * 210.00032 * 17 15 13 20 20 H 1.48504 * 109.47161 * 330.00090 * 17 15 13 21 21 C 1.47425 * 108.70099 * 358.86261 * 12 11 9 22 22 C 1.54916 * 104.83226 * 24.12964 * 21 12 11 23 23 H 1.09006 * 111.00165 * 204.87970 * 22 21 12 24 24 O 1.42897 * 111.00464 * 81.06336 * 22 21 12 25 25 N 1.46493 * 109.47285 * 60.13804 * 4 2 1 26 26 C 1.46769 * 124.35425 * 239.72832 * 25 4 2 27 27 C 1.54659 * 105.38462 * 162.85381 * 26 25 4 28 28 C 1.54623 * 101.68531 * 25.76797 * 27 26 25 29 29 C 1.34427 * 124.34878 * 60.02262 * 25 4 2 30 30 O 1.21278 * 124.94049 * 0.43303 * 29 25 4 31 31 H 1.09004 * 109.46904 * 300.00088 * 1 2 3 32 32 H 1.08999 * 109.47176 * 59.99482 * 1 2 3 33 33 H 1.08998 * 109.47558 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47353 * 239.99733 * 2 1 3 35 35 H 1.08995 * 109.47228 * 178.59647 * 3 2 1 36 36 H 1.09003 * 109.46858 * 298.60121 * 3 2 1 37 37 H 1.09001 * 109.47138 * 58.59486 * 3 2 1 38 38 H 0.96997 * 120.00070 * 354.84872 * 8 6 4 39 39 H 1.09000 * 109.88121 * 100.02653 * 11 9 8 40 40 H 1.09001 * 109.87710 * 339.02096 * 11 9 8 41 41 H 0.96997 * 119.99527 * 180.02562 * 16 15 13 42 42 H 1.09001 * 110.36643 * 142.96744 * 21 12 11 43 43 H 1.09001 * 110.36928 * 265.17866 * 21 12 11 44 44 H 0.96695 * 114.00051 * 61.45548 * 24 22 21 45 45 H 1.09004 * 110.24309 * 281.98619 * 26 25 4 46 46 H 1.09000 * 110.24402 * 43.98067 * 26 25 4 47 47 H 1.08999 * 111.18856 * 267.59178 * 27 26 25 48 48 H 1.09002 * 110.81776 * 143.78086 * 27 26 25 49 49 H 1.09007 * 110.48644 * 216.31173 * 28 27 26 50 50 H 1.08995 * 110.60296 * 93.71793 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6746 -0.2089 2.1392 6 6 3.5470 -0.7183 1.2510 7 8 4.1558 -1.6377 0.7462 8 7 4.2181 0.3061 1.8136 9 6 5.6787 0.2564 1.9164 10 1 6.1122 -0.2203 1.0373 11 6 6.1109 -0.4763 3.2040 12 7 7.2681 0.2452 3.7532 13 6 7.9351 -0.0756 4.9053 14 1 7.6187 -0.9238 5.4942 15 6 9.0174 0.6902 5.3168 16 7 9.4021 1.7248 4.5999 17 14 9.9269 0.2531 6.8888 18 1 11.0305 -0.6900 6.5763 19 1 10.4873 1.4870 7.4959 20 1 8.9859 -0.3853 7.8440 21 6 7.5920 1.3706 2.8578 22 6 6.2680 1.6805 2.1155 23 1 6.4610 2.1623 1.1570 24 8 5.4032 2.4815 2.9234 25 7 1.5544 -2.1034 1.2476 26 6 0.7118 -2.6865 2.2984 27 6 0.1033 -3.9642 1.6745 28 6 1.1577 -4.3214 0.6015 29 6 1.8280 -3.0023 0.2862 30 8 2.5129 -2.7872 -0.6912 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1298 1.4425 0.0252 36 1 1.6974 1.9490 -0.9023 37 1 1.6564 1.9635 0.8771 38 1 3.7342 1.0763 2.1505 39 1 6.3914 -1.5032 2.9697 40 1 5.2939 -0.4709 3.9255 41 1 10.1585 2.2596 4.8873 42 1 7.9135 2.2360 3.4373 43 1 8.3674 1.0804 2.1488 44 1 5.7708 3.3449 3.1565 45 1 1.3162 -2.9396 3.1694 46 1 -0.0795 -1.9905 2.5769 47 1 -0.8641 -3.7571 1.2172 48 1 0.0198 -4.7566 2.4184 49 1 0.6748 -4.7260 -0.2881 50 1 1.8826 -5.0325 0.9977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221167285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:56 Heat of formation + Delta-G solvation = -109.235419 kcal Electronic energy + Delta-G solvation = -31733.587297 eV Core-core repulsion = 27567.773803 eV Total energy + Delta-G solvation = -4165.813494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.99051 -40.61768 -39.31743 -37.45532 -36.67738 -36.37051 -35.44440 -33.57466 -32.65094 -30.49997 -29.16485 -28.39864 -27.95602 -27.68797 -26.26454 -22.92563 -22.64613 -22.22131 -21.78259 -21.33706 -20.05960 -19.20927 -18.47854 -18.23655 -17.74241 -17.11233 -16.87271 -16.60940 -16.46765 -16.04193 -15.73313 -15.54607 -15.06041 -14.77885 -14.71267 -14.54656 -14.43680 -14.22412 -13.96157 -13.73951 -13.65497 -13.57132 -13.28774 -13.23508 -12.99535 -12.95185 -12.77081 -12.35742 -12.29931 -12.17842 -12.09142 -12.00158 -11.97299 -11.93406 -11.84527 -11.70194 -11.03312 -10.90132 -10.75555 -10.55046 -10.09122 -9.58778 -8.94575 -7.83273 -5.27282 1.42466 1.45681 1.47142 1.55862 1.73333 1.92432 2.30075 2.48020 3.15702 3.27743 3.42296 3.57084 3.67274 3.74342 3.80213 3.82561 3.88090 3.93213 4.08630 4.19362 4.25723 4.28363 4.33966 4.44524 4.61226 4.69530 4.70330 4.72663 4.78862 4.79874 4.87579 4.91023 4.95830 4.98406 5.11528 5.19614 5.25033 5.30289 5.32992 5.38291 5.42485 5.46506 5.60530 5.67180 6.21671 6.23266 6.57913 6.87836 7.05442 7.22835 7.36846 7.69329 8.32712 9.18901 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.003070 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.848975 B = 9118.972304 C =10056.839531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.152 4.152 4 C 0.152 3.848 5 H 0.140 0.860 6 C 0.491 3.509 7 O -0.563 6.563 8 N -0.694 5.694 9 C 0.155 3.845 10 H 0.081 0.919 11 C 0.137 3.863 12 N -0.615 5.615 13 C -0.244 4.244 14 H 0.073 0.927 15 C -0.059 4.059 16 N -0.945 5.945 17 Si 0.982 3.018 18 H -0.289 1.289 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.127 3.873 22 C 0.095 3.905 23 H 0.089 0.911 24 O -0.559 6.559 25 N -0.611 5.611 26 C 0.093 3.907 27 C -0.113 4.113 28 C -0.154 4.154 29 C 0.501 3.499 30 O -0.561 6.561 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.418 0.582 39 H 0.000 1.000 40 H 0.026 0.974 41 H 0.250 0.750 42 H 0.095 0.905 43 H -0.004 1.004 44 H 0.396 0.604 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.425 -1.719 -5.275 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 C -0.209 4.209 4 C 0.045 3.955 5 H 0.157 0.843 6 C 0.277 3.723 7 O -0.440 6.440 8 N -0.348 5.348 9 C 0.048 3.952 10 H 0.099 0.901 11 C 0.010 3.990 12 N -0.341 5.341 13 C -0.373 4.373 14 H 0.091 0.909 15 C -0.251 4.251 16 N -0.594 5.594 17 Si 0.810 3.190 18 H -0.216 1.216 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.001 3.999 22 C 0.034 3.966 23 H 0.107 0.893 24 O -0.367 6.367 25 N -0.346 5.346 26 C -0.028 4.028 27 C -0.150 4.150 28 C -0.194 4.194 29 C 0.290 3.710 30 O -0.438 6.438 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.257 0.743 39 H 0.018 0.982 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.113 0.887 43 H 0.014 0.986 44 H 0.247 0.753 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.131 0.869 49 H 0.127 0.873 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.853 -2.665 -6.048 25.716 hybrid contribution 1.802 0.290 0.734 1.967 sum -23.050 -2.374 -5.314 23.774 Atomic orbital electron populations 1.21700 0.91514 1.02146 1.03360 1.21334 0.98587 0.96421 0.95491 1.21938 1.00659 0.94198 1.04137 1.21026 0.88058 0.83676 1.02710 0.84284 1.21740 0.91805 0.81735 0.77002 1.90773 1.70861 1.37235 1.45135 1.45739 1.06068 1.22015 1.60968 1.21730 0.81362 0.95434 0.96664 0.90061 1.21564 0.90003 0.93638 0.93777 1.44551 1.33115 1.31711 1.24727 1.19388 1.09171 1.10228 0.98493 0.90889 1.25568 0.99284 0.97977 1.02320 1.69932 1.29087 1.20201 1.40178 0.85030 0.78223 0.76833 0.78903 1.21643 1.21232 1.19664 1.22526 0.92302 0.93490 0.91570 1.23241 0.90037 0.89722 0.93603 0.89311 1.86164 1.44528 1.33105 1.72915 1.48200 1.51959 1.10004 1.24403 1.22502 0.94126 0.96722 0.89447 1.22636 0.97848 0.96914 0.97609 1.22375 1.00089 0.94129 1.02813 1.21643 0.79393 0.88000 0.81962 1.90697 1.39542 1.82471 1.31098 0.90060 0.91754 0.92903 0.93310 0.94001 0.90938 0.89550 0.74314 0.98175 0.95580 0.93974 0.88685 0.98620 0.75321 0.91344 0.87083 0.87896 0.86902 0.87331 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.04 71.98 0.65 -1.14 16 2 C -0.10 -2.06 2.36 -10.79 -0.03 -2.09 16 3 C -0.15 -2.70 8.54 71.98 0.61 -2.08 16 4 C 0.15 3.50 2.26 44.25 0.10 3.60 16 5 H 0.14 2.19 8.07 -2.39 -0.02 2.17 16 6 C 0.49 16.37 6.16 87.66 0.54 16.91 16 7 O -0.56 -24.95 13.64 18.39 0.25 -24.70 16 8 N -0.69 -21.82 4.07 -436.52 -1.77 -23.59 16 9 C 0.15 6.04 3.17 46.27 0.15 6.18 16 10 H 0.08 3.48 7.64 -2.39 -0.02 3.46 16 11 C 0.14 6.44 6.98 86.73 0.61 7.04 16 12 N -0.61 -32.88 3.39 -691.97 -2.35 -35.23 16 13 C -0.24 -14.10 10.27 84.04 0.86 -13.24 16 14 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 16 N -0.94 -54.76 10.09 21.65 0.22 -54.54 16 17 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C 0.13 6.11 5.62 86.86 0.49 6.60 16 22 C 0.09 3.43 4.30 32.08 0.14 3.56 16 23 H 0.09 2.75 8.14 -2.38 -0.02 2.74 16 24 O -0.56 -17.59 12.23 -148.98 -1.82 -19.41 16 25 N -0.61 -13.58 2.04 -797.83 -1.63 -15.21 16 26 C 0.09 1.14 7.31 86.89 0.64 1.77 16 27 C -0.11 -0.95 7.19 31.71 0.23 -0.73 16 28 C -0.15 -2.66 6.86 30.59 0.21 -2.46 16 29 C 0.50 14.25 6.86 87.90 0.60 14.86 16 30 O -0.56 -22.38 14.48 18.39 0.27 -22.12 16 31 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.76 7.61 -2.39 -0.02 0.74 16 34 H 0.05 1.46 6.79 -2.39 -0.02 1.45 16 35 H 0.04 0.94 6.31 -2.39 -0.02 0.93 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.42 10.96 7.04 -92.71 -0.65 10.30 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 41 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.10 4.99 5.87 -2.39 -0.01 4.98 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.40 10.02 9.11 -74.06 -0.67 9.35 16 45 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -84.68 391.67 1.08 -83.60 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.37 Total: 27.52 kcal Atomic # 6 Polarization: 29.69 SS G_CDS: 6.26 Total: 35.96 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.53 Total: -128.57 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -1.31 Total: -66.23 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -84.68 1.08 -83.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221167285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.637 kcal (2) G-P(sol) polarization free energy of solvation -84.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds