Wall clock time and date at job start Wed Apr 1 2020 00:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 H 1.08999 * 109.46563 * 305.05470 * 3 2 1 5 5 O 1.42898 * 109.46980 * 65.05342 * 3 2 1 6 6 C 1.42902 * 114.00286 * 259.07916 * 5 3 2 7 7 C 1.50699 * 109.46934 * 185.05604 * 3 2 1 8 8 O 1.21278 * 119.99825 * 245.00011 * 7 3 2 9 9 N 1.34775 * 119.99913 * 64.99840 * 7 3 2 10 10 C 1.47213 * 136.38171 * 359.97289 * 9 7 3 11 11 C 1.53805 * 87.86465 * 152.01748 * 10 9 7 12 12 H 1.08997 * 116.06002 * 141.31625 * 11 10 9 13 13 C 1.53164 * 111.80442 * 274.26522 * 11 10 9 14 14 C 1.53097 * 108.91065 * 138.85457 * 13 11 10 15 15 N 1.46399 * 108.99976 * 297.52681 * 14 13 11 16 16 C 1.46902 * 110.99861 * 190.48887 * 15 14 13 17 17 C 1.50703 * 109.46685 * 66.04671 * 16 15 14 18 18 O 1.21288 * 120.00649 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99912 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00017 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00362 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99692 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00268 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47184 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47539 * 119.99843 * 24 22 20 27 27 H 1.48498 * 109.47056 * 239.99925 * 24 22 20 28 28 C 1.45488 * 113.13015 * 64.94392 * 15 14 13 29 29 C 1.46629 * 136.37633 * 179.97438 * 9 7 3 30 30 H 1.08995 * 111.73452 * 95.93325 * 29 9 7 31 31 H 1.08997 * 109.47360 * 54.24415 * 1 2 3 32 32 H 1.09004 * 109.47142 * 174.24066 * 1 2 3 33 33 H 1.08995 * 109.47246 * 294.23865 * 1 2 3 34 34 H 1.08998 * 109.47094 * 240.00156 * 2 1 3 35 35 H 1.08995 * 109.47011 * 119.99722 * 2 1 3 36 36 H 1.08998 * 109.47326 * 185.66682 * 6 5 3 37 37 H 1.09005 * 109.46650 * 305.66503 * 6 5 3 38 38 H 1.08996 * 109.46822 * 65.65827 * 6 5 3 39 39 H 1.09003 * 113.50204 * 266.76227 * 10 9 7 40 40 H 1.09000 * 113.50733 * 37.25873 * 10 9 7 41 41 H 1.08999 * 109.57987 * 18.98876 * 13 11 10 42 42 H 1.08999 * 109.57515 * 258.71574 * 13 11 10 43 43 H 1.08991 * 109.55220 * 57.38798 * 14 13 11 44 44 H 1.08997 * 109.54182 * 177.67503 * 14 13 11 45 45 H 1.08996 * 109.47271 * 186.04598 * 16 15 14 46 46 H 1.08997 * 109.47305 * 306.04940 * 16 15 14 47 47 H 0.97005 * 119.99511 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00540 * 179.97438 * 23 22 20 49 49 H 1.09000 * 108.57869 * 71.66745 * 28 15 14 50 50 H 1.08998 * 108.58283 * 189.48506 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9817 -0.8413 5 8 1.6630 2.0810 1.2216 6 6 0.5244 2.9363 1.1031 7 6 3.5418 1.4444 -0.1252 8 8 4.2257 1.8608 0.7856 9 7 4.1248 0.9832 -1.2494 10 6 3.6709 0.4160 -2.5298 11 6 4.9541 0.9758 -3.1668 12 1 5.4331 0.3431 -3.9140 13 6 4.7823 2.4331 -3.6056 14 6 6.0531 3.2106 -3.2526 15 7 6.2329 3.1956 -1.7998 16 6 7.2907 4.1292 -1.3906 17 6 6.8545 5.5418 -1.6833 18 8 5.7693 5.7503 -2.1831 19 7 7.6701 6.5736 -1.3888 20 6 7.2732 7.8586 -1.6545 21 1 6.3069 8.0442 -2.0995 22 6 8.1143 8.9223 -1.3513 23 7 9.2900 8.6965 -0.8093 24 14 7.5732 10.6733 -1.7128 25 1 6.2174 10.6574 -2.3183 26 1 7.5424 11.4528 -0.4492 27 1 8.5300 11.3017 -2.6588 28 6 6.4788 1.8638 -1.2681 29 6 5.4954 0.8217 -1.7449 30 1 5.8703 -0.1873 -1.5733 31 1 -0.3634 0.6005 -0.8339 32 1 -0.3634 -1.0225 -0.1031 33 1 -0.3633 0.4219 0.9370 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.3633 3.4595 2.0457 37 1 0.6969 3.6629 0.3091 38 1 -0.3554 2.3390 0.8640 39 1 3.6249 -0.6731 -2.5308 40 1 2.7597 0.8771 -2.9109 41 1 3.9296 2.8724 -3.0881 42 1 4.6166 2.4732 -4.6822 43 1 6.9125 2.7416 -3.7315 44 1 5.9583 4.2401 -3.5978 45 1 7.4778 4.0208 -0.3223 46 1 8.2037 3.9089 -1.9436 47 1 8.5380 6.4069 -0.9887 48 1 9.8773 9.4390 -0.5980 49 1 7.4823 1.5534 -1.5593 50 1 6.4326 1.9102 -0.1801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221417833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:38 Heat of formation + Delta-G solvation = -62.340693 kcal Electronic energy + Delta-G solvation = -31202.793844 eV Core-core repulsion = 27039.013857 eV Total energy + Delta-G solvation = -4163.779986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27456 -39.19706 -38.28216 -37.16207 -35.96468 -33.79897 -33.59756 -31.95655 -31.12629 -30.05014 -28.73199 -27.91819 -25.85195 -25.71565 -24.00930 -23.59864 -22.32405 -21.62730 -20.39482 -19.13908 -18.13642 -17.80973 -17.21621 -17.02620 -16.39253 -15.95582 -15.73865 -15.47535 -14.97220 -14.71426 -14.48459 -14.39624 -14.05936 -13.88615 -13.72595 -13.57866 -13.49055 -13.12977 -13.02684 -12.65040 -12.40032 -12.32289 -12.13983 -11.98381 -11.86661 -11.61652 -11.52197 -11.44861 -11.26311 -11.09854 -11.00810 -10.94089 -10.50406 -10.29932 -10.19946 -10.15493 -10.00296 -9.41486 -9.22443 -8.67003 -8.30539 -7.89479 -7.64420 -6.35455 -3.75838 2.56779 2.75785 3.20212 3.30107 3.37319 3.70080 3.93419 3.99536 4.16057 4.30658 4.31731 4.56051 4.61412 4.74833 4.84630 4.94525 5.03092 5.05171 5.15009 5.17496 5.20845 5.24096 5.29399 5.31627 5.32913 5.42534 5.47395 5.56356 5.56792 5.58418 5.61913 5.75671 5.83377 5.85295 5.90312 5.93190 6.02638 6.06739 6.16370 6.36765 6.47484 6.51641 6.94214 7.43222 7.60875 7.65078 7.78518 8.13629 8.32066 8.69305 9.24850 9.62209 10.14389 10.82641 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.002952 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.900387 B = 9482.415645 C =10631.307593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.080 3.920 4 H 0.085 0.915 5 O -0.356 6.356 6 C 0.025 3.975 7 C 0.545 3.455 8 O -0.507 6.507 9 N -0.633 5.633 10 C 0.099 3.901 11 C -0.122 4.122 12 H 0.100 0.900 13 C -0.091 4.091 14 C 0.059 3.941 15 N -0.516 5.516 16 C 0.053 3.947 17 C 0.448 3.552 18 O -0.577 6.577 19 N -0.567 5.567 20 C -0.295 4.295 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.057 3.943 29 C 0.145 3.855 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.020 0.980 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.032 0.968 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 -21.376 -4.044 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.019 3.981 4 H 0.103 0.897 5 O -0.274 6.274 6 C -0.071 4.071 7 C 0.333 3.667 8 O -0.380 6.380 9 N -0.372 5.372 10 C -0.024 4.024 11 C -0.141 4.141 12 H 0.118 0.882 13 C -0.129 4.129 14 C -0.068 4.068 15 N -0.241 5.241 16 C -0.078 4.078 17 C 0.233 3.767 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.071 4.071 29 C 0.042 3.958 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.039 0.961 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.050 0.950 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.283 -20.642 -3.193 24.753 hybrid contribution 0.967 0.510 -0.366 1.153 sum -12.316 -20.131 -3.560 23.867 Atomic orbital electron populations 1.21838 0.94858 1.02092 1.02219 1.21925 0.96977 0.95044 1.03342 1.21918 0.92072 0.94906 0.89223 0.89724 1.88018 1.47926 1.62017 1.29404 1.23014 0.87734 0.93262 1.03122 1.19905 0.89355 0.77376 0.80027 1.90727 1.64693 1.44840 1.37732 1.49362 1.09291 1.62871 1.15657 1.23184 0.98691 0.98416 0.82152 1.23035 0.96475 0.98837 0.95748 0.88176 1.21381 0.99700 0.91588 1.00245 1.22049 0.95203 1.02589 0.86989 1.59981 1.45734 1.06134 1.12268 1.21756 0.92017 0.92640 1.01356 1.19741 0.86450 0.85706 0.84795 1.90470 1.22547 1.84969 1.48081 1.41875 1.17713 1.05512 1.55245 1.19726 1.03304 0.81346 1.38115 0.87948 1.25251 0.95367 1.00273 0.97181 1.69623 1.08909 1.32811 1.43119 0.85814 0.78768 0.81846 0.77987 1.19273 1.20788 1.20842 1.21377 0.95540 0.88432 1.01776 1.22064 0.84199 0.98332 0.91232 0.89423 0.92636 0.92174 0.91933 0.90639 0.90558 0.89243 0.93537 0.93703 0.89870 0.90306 0.90679 0.91258 0.96150 0.87870 0.89465 0.93619 0.77527 0.92004 0.94979 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.86 37.16 0.33 -0.74 16 2 C -0.13 -1.20 5.59 -26.73 -0.15 -1.35 16 3 C 0.08 0.99 2.54 -27.88 -0.07 0.91 16 4 H 0.08 0.92 7.60 -51.93 -0.39 0.53 16 5 O -0.36 -5.11 9.67 -55.09 -0.53 -5.64 16 6 C 0.03 0.27 10.48 101.05 1.06 1.32 16 7 C 0.55 8.47 7.36 -10.99 -0.08 8.39 16 8 O -0.51 -10.38 15.89 -14.30 -0.23 -10.61 16 9 N -0.63 -7.83 3.32 -184.40 -0.61 -8.44 16 10 C 0.10 0.79 6.44 -10.55 -0.07 0.72 16 11 C -0.12 -1.13 4.64 -90.15 -0.42 -1.55 16 12 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 13 C -0.09 -1.14 5.74 -26.60 -0.15 -1.29 16 14 C 0.06 0.95 5.09 -4.05 -0.02 0.93 16 15 N -0.52 -9.25 4.29 -238.89 -1.03 -10.28 16 16 C 0.05 1.04 5.43 -4.97 -0.03 1.01 16 17 C 0.45 11.04 7.41 -10.98 -0.08 10.95 16 18 O -0.58 -15.91 13.97 5.55 0.08 -15.83 16 19 N -0.57 -14.92 5.29 -10.96 -0.06 -14.97 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.26 13.05 55.50 0.72 -24.54 16 24 Si 0.93 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.06 0.85 4.98 -5.59 -0.03 0.82 16 29 C 0.15 1.68 4.10 -76.21 -0.31 1.36 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.47 6.58 -51.93 -0.34 0.13 16 34 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.50 7.99 -51.93 -0.41 0.08 16 38 H 0.04 0.36 6.00 -51.93 -0.31 0.05 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 41 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 2.05 5.78 -51.93 -0.30 1.75 16 45 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 46 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 47 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 48 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 50 H 0.09 1.54 6.98 -51.93 -0.36 1.18 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -36.25 394.49 -9.18 -45.44 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.19 Total: 9.02 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -0.26 Total: 13.38 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.97 Total: -58.23 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.68 Total: -32.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.25 -9.18 -45.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221417833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.905 kcal (2) G-P(sol) polarization free energy of solvation -36.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds