Wall clock time and date at job start Wed Apr 1 2020 00:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 H 1.08999 * 109.46563 * 305.05470 * 3 2 1 5 5 O 1.42898 * 109.46980 * 65.05342 * 3 2 1 6 6 C 1.42902 * 114.00286 * 259.07916 * 5 3 2 7 7 C 1.50699 * 109.46934 * 185.05604 * 3 2 1 8 8 O 1.21278 * 119.99825 * 245.00011 * 7 3 2 9 9 N 1.34775 * 119.99913 * 64.99840 * 7 3 2 10 10 C 1.47213 * 136.38171 * 359.97289 * 9 7 3 11 11 C 1.53805 * 87.86465 * 152.01748 * 10 9 7 12 12 H 1.08997 * 116.06002 * 141.31625 * 11 10 9 13 13 C 1.53164 * 111.80442 * 274.26522 * 11 10 9 14 14 C 1.53097 * 108.91065 * 138.85457 * 13 11 10 15 15 N 1.46399 * 108.99976 * 297.52681 * 14 13 11 16 16 C 1.46902 * 110.99861 * 190.48887 * 15 14 13 17 17 C 1.50703 * 109.46685 * 66.04671 * 16 15 14 18 18 O 1.21288 * 120.00649 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99912 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00017 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00362 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99692 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00268 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47184 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47539 * 119.99843 * 24 22 20 27 27 H 1.48498 * 109.47056 * 239.99925 * 24 22 20 28 28 C 1.45488 * 113.13015 * 64.94392 * 15 14 13 29 29 C 1.46629 * 136.37633 * 179.97438 * 9 7 3 30 30 H 1.08995 * 111.73452 * 95.93325 * 29 9 7 31 31 H 1.08997 * 109.47360 * 54.24415 * 1 2 3 32 32 H 1.09004 * 109.47142 * 174.24066 * 1 2 3 33 33 H 1.08995 * 109.47246 * 294.23865 * 1 2 3 34 34 H 1.08998 * 109.47094 * 240.00156 * 2 1 3 35 35 H 1.08995 * 109.47011 * 119.99722 * 2 1 3 36 36 H 1.08998 * 109.47326 * 185.66682 * 6 5 3 37 37 H 1.09005 * 109.46650 * 305.66503 * 6 5 3 38 38 H 1.08996 * 109.46822 * 65.65827 * 6 5 3 39 39 H 1.09003 * 113.50204 * 266.76227 * 10 9 7 40 40 H 1.09000 * 113.50733 * 37.25873 * 10 9 7 41 41 H 1.08999 * 109.57987 * 18.98876 * 13 11 10 42 42 H 1.08999 * 109.57515 * 258.71574 * 13 11 10 43 43 H 1.08991 * 109.55220 * 57.38798 * 14 13 11 44 44 H 1.08997 * 109.54182 * 177.67503 * 14 13 11 45 45 H 1.08996 * 109.47271 * 186.04598 * 16 15 14 46 46 H 1.08997 * 109.47305 * 306.04940 * 16 15 14 47 47 H 0.97005 * 119.99511 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00540 * 179.97438 * 23 22 20 49 49 H 1.09000 * 108.57869 * 71.66745 * 28 15 14 50 50 H 1.08998 * 108.58283 * 189.48506 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9817 -0.8413 5 8 1.6630 2.0810 1.2216 6 6 0.5244 2.9363 1.1031 7 6 3.5418 1.4444 -0.1252 8 8 4.2257 1.8608 0.7856 9 7 4.1248 0.9832 -1.2494 10 6 3.6709 0.4160 -2.5298 11 6 4.9541 0.9758 -3.1668 12 1 5.4331 0.3431 -3.9140 13 6 4.7823 2.4331 -3.6056 14 6 6.0531 3.2106 -3.2526 15 7 6.2329 3.1956 -1.7998 16 6 7.2907 4.1292 -1.3906 17 6 6.8545 5.5418 -1.6833 18 8 5.7693 5.7503 -2.1831 19 7 7.6701 6.5736 -1.3888 20 6 7.2732 7.8586 -1.6545 21 1 6.3069 8.0442 -2.0995 22 6 8.1143 8.9223 -1.3513 23 7 9.2900 8.6965 -0.8093 24 14 7.5732 10.6733 -1.7128 25 1 6.2174 10.6574 -2.3183 26 1 7.5424 11.4528 -0.4492 27 1 8.5300 11.3017 -2.6588 28 6 6.4788 1.8638 -1.2681 29 6 5.4954 0.8217 -1.7449 30 1 5.8703 -0.1873 -1.5733 31 1 -0.3634 0.6005 -0.8339 32 1 -0.3634 -1.0225 -0.1031 33 1 -0.3633 0.4219 0.9370 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.3633 3.4595 2.0457 37 1 0.6969 3.6629 0.3091 38 1 -0.3554 2.3390 0.8640 39 1 3.6249 -0.6731 -2.5308 40 1 2.7597 0.8771 -2.9109 41 1 3.9296 2.8724 -3.0881 42 1 4.6166 2.4732 -4.6822 43 1 6.9125 2.7416 -3.7315 44 1 5.9583 4.2401 -3.5978 45 1 7.4778 4.0208 -0.3223 46 1 8.2037 3.9089 -1.9436 47 1 8.5380 6.4069 -0.9887 48 1 9.8773 9.4390 -0.5980 49 1 7.4823 1.5534 -1.5593 50 1 6.4326 1.9102 -0.1801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221417833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:37 Heat of formation + Delta-G solvation = -90.155961 kcal Electronic energy + Delta-G solvation = -31204.000004 eV Core-core repulsion = 27039.013857 eV Total energy + Delta-G solvation = -4164.986147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.22707 -40.44847 -39.90300 -38.31075 -37.37158 -35.87139 -34.40799 -33.37488 -32.91197 -31.09807 -29.98105 -28.81214 -27.43874 -26.59324 -25.69128 -24.63791 -23.12637 -22.62064 -21.40325 -21.06184 -19.91522 -19.14516 -18.28312 -17.95512 -17.64414 -17.32548 -16.91550 -16.51913 -16.50673 -16.34762 -15.89052 -15.70894 -15.41706 -15.08890 -15.02972 -14.77963 -14.44249 -14.38458 -14.09563 -13.76816 -13.55241 -13.48588 -13.26555 -13.14281 -13.02341 -12.90292 -12.76572 -12.68477 -12.43337 -12.40114 -12.33515 -12.13603 -12.05066 -11.74368 -11.72995 -11.42517 -11.15774 -10.96187 -10.30912 -10.24290 -10.02260 -9.58813 -9.03816 -8.48461 -5.97574 1.34308 1.38630 1.53640 1.66946 1.68694 2.02173 2.26044 2.70474 2.86004 3.17627 3.27775 3.37179 3.47588 3.76870 3.80191 3.94798 3.98235 4.09671 4.22760 4.24626 4.31213 4.35597 4.38155 4.43426 4.45475 4.47807 4.52053 4.56947 4.58211 4.64313 4.75647 4.76232 4.81319 4.82409 4.98738 5.03713 5.05259 5.06680 5.13063 5.27626 5.35580 5.38193 5.45266 5.89664 6.07203 6.12488 6.41229 6.58271 6.82864 7.10388 7.25040 7.53221 8.09100 8.69553 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.002952 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.900387 B = 9482.415645 C =10631.307593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.080 3.920 4 H 0.096 0.904 5 O -0.393 6.393 6 C 0.021 3.979 7 C 0.530 3.470 8 O -0.577 6.577 9 N -0.639 5.639 10 C 0.105 3.895 11 C -0.106 4.106 12 H 0.145 0.855 13 C -0.087 4.087 14 C 0.059 3.941 15 N -0.541 5.541 16 C 0.065 3.935 17 C 0.444 3.556 18 O -0.611 6.611 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.267 1.267 28 C 0.059 3.941 29 C 0.131 3.869 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.394 0.606 48 H 0.278 0.722 49 H 0.054 0.946 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -23.915 -6.179 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.019 3.981 4 H 0.114 0.886 5 O -0.311 6.311 6 C -0.074 4.074 7 C 0.320 3.680 8 O -0.456 6.456 9 N -0.375 5.375 10 C -0.016 4.016 11 C -0.124 4.124 12 H 0.163 0.837 13 C -0.125 4.125 14 C -0.068 4.068 15 N -0.266 5.266 16 C -0.066 4.066 17 C 0.231 3.769 18 O -0.496 6.496 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.819 3.181 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.192 1.192 28 C -0.069 4.069 29 C 0.028 3.972 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.228 0.772 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.070 -23.229 -5.380 27.686 hybrid contribution 1.245 1.300 0.266 1.820 sum -12.824 -21.929 -5.114 25.913 Atomic orbital electron populations 1.21826 0.93210 1.03432 1.02208 1.21890 0.98261 0.92397 1.03691 1.22115 0.90141 0.97071 0.88801 0.88650 1.87967 1.49360 1.62808 1.31010 1.23161 0.87829 0.93309 1.03139 1.20626 0.90623 0.76693 0.80056 1.90681 1.66282 1.48225 1.40427 1.49555 1.10421 1.61643 1.15901 1.23520 0.98495 1.00761 0.78817 1.22994 0.97288 0.97026 0.95116 0.83708 1.21342 0.96312 0.93375 1.01496 1.21983 0.98094 1.00800 0.85920 1.59905 1.45444 1.07645 1.13643 1.21582 0.93477 0.89830 1.01729 1.20674 0.85630 0.87428 0.83128 1.90441 1.24013 1.85975 1.49217 1.41951 1.18106 1.05469 1.55827 1.19685 1.03152 0.83034 1.40131 0.90364 1.26092 0.95186 1.03936 0.96289 1.69690 1.09469 1.34333 1.42911 0.84839 0.78286 0.76705 0.78293 1.19723 1.19732 1.19232 1.21377 0.98136 0.87674 0.99749 1.22466 0.83325 0.98688 0.92712 0.85789 0.91479 0.90339 0.92916 0.88240 0.92126 0.88999 0.94306 0.90777 0.85467 0.89085 0.93828 0.88711 0.93946 0.92563 0.89450 0.91190 0.77218 0.91296 0.92809 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.86 71.98 0.64 -1.06 16 2 C -0.12 -1.97 5.59 30.60 0.17 -1.80 16 3 C 0.08 1.94 2.54 29.85 0.08 2.02 16 4 H 0.10 2.02 7.60 -2.39 -0.02 2.00 16 5 O -0.39 -11.73 9.67 -129.99 -1.26 -12.98 16 6 C 0.02 0.46 10.48 113.37 1.19 1.65 16 7 C 0.53 16.79 7.36 87.66 0.64 17.43 16 8 O -0.58 -25.23 15.89 15.96 0.25 -24.98 16 9 N -0.64 -14.68 3.32 -855.72 -2.84 -17.53 16 10 C 0.11 1.18 6.44 81.78 0.53 1.71 16 11 C -0.11 -1.49 4.64 -10.49 -0.05 -1.54 16 12 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 13 C -0.09 -2.02 5.74 30.68 0.18 -1.84 16 14 C 0.06 1.90 5.09 86.43 0.44 2.34 16 15 N -0.54 -19.75 4.29 -909.72 -3.90 -23.66 16 16 C 0.06 2.62 5.43 85.56 0.46 3.08 16 17 C 0.44 23.06 7.41 87.66 0.65 23.71 16 18 O -0.61 -35.76 13.97 -3.05 -0.04 -35.80 16 19 N -0.58 -31.77 5.29 -306.98 -1.62 -33.39 16 20 C -0.33 -19.71 9.68 84.04 0.81 -18.90 16 21 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 22 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 23 N -0.92 -52.06 13.05 21.66 0.28 -51.78 16 24 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 C 0.06 1.71 4.98 85.92 0.43 2.13 16 29 C 0.13 2.66 4.10 39.56 0.16 2.83 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.05 0.71 6.58 -2.39 -0.02 0.69 16 34 H 0.10 1.05 6.75 -2.39 -0.02 1.03 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 0.86 7.99 -2.38 -0.02 0.84 16 38 H 0.07 1.11 6.00 -2.39 -0.01 1.10 16 39 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 40 H 0.09 0.87 8.03 -2.39 -0.02 0.86 16 41 H 0.04 1.28 7.69 -2.39 -0.02 1.26 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 2.33 5.78 -2.39 -0.01 2.32 16 45 H 0.09 3.48 8.03 -2.39 -0.02 3.46 16 46 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 47 H 0.39 20.84 7.90 -92.70 -0.73 20.11 16 48 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 50 H 0.05 1.99 6.98 -2.39 -0.02 1.97 16 Total: -1.00 -87.11 394.49 -0.09 -87.21 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.21 Total: 34.93 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: 6.80 Total: 31.34 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -8.09 Total: -126.35 kcal Atomic # 8 Polarization: -72.72 SS G_CDS: -1.05 Total: -73.77 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -87.11 -0.09 -87.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221417833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.950 kcal (2) G-P(sol) polarization free energy of solvation -87.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds