Wall clock time and date at job start Wed Apr 1 2020 00:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47550 * 2 1 4 4 H 1.09000 * 109.46932 * 55.42773 * 3 2 1 5 5 O 1.42903 * 109.47315 * 295.43086 * 3 2 1 6 6 C 1.42904 * 114.00013 * 115.01334 * 5 3 2 7 7 C 1.50696 * 109.47583 * 175.43028 * 3 2 1 8 8 O 1.21281 * 120.00273 * 113.30731 * 7 3 2 9 9 N 1.34782 * 119.99669 * 293.30844 * 7 3 2 10 10 C 1.47735 * 134.86434 * 354.84784 * 9 7 3 11 11 C 1.54481 * 85.89324 * 154.39939 * 10 9 7 12 12 H 1.09002 * 115.09882 * 139.58342 * 11 10 9 13 13 C 1.53110 * 111.18201 * 270.38647 * 11 10 9 14 14 C 1.53057 * 109.08152 * 140.37106 * 13 11 10 15 15 N 1.46471 * 108.74670 * 297.31767 * 14 13 11 16 16 C 1.46898 * 110.98472 * 191.00739 * 15 14 13 17 17 C 1.50701 * 109.47017 * 63.53539 * 16 15 14 18 18 O 1.21298 * 119.99926 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00096 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00028 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00258 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00106 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00043 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47014 * 90.00054 * 24 22 20 26 26 H 1.48502 * 109.47136 * 210.00107 * 24 22 20 27 27 H 1.48506 * 109.47310 * 329.99951 * 24 22 20 28 28 C 1.45462 * 112.93695 * 65.61906 * 15 14 13 29 29 C 1.46989 * 134.86345 * 174.85304 * 9 7 3 30 30 H 1.09000 * 111.86503 * 93.51606 * 29 9 7 31 31 H 1.09008 * 109.46801 * 298.32774 * 1 2 3 32 32 H 1.08996 * 109.47044 * 58.32182 * 1 2 3 33 33 H 1.08991 * 109.47257 * 178.33147 * 1 2 3 34 34 H 1.09000 * 109.46804 * 239.99946 * 2 1 3 35 35 H 1.08997 * 109.47200 * 120.00686 * 2 1 3 36 36 H 1.09002 * 109.46888 * 174.42874 * 6 5 3 37 37 H 1.08992 * 109.47342 * 294.42942 * 6 5 3 38 38 H 1.09000 * 109.47012 * 54.43448 * 6 5 3 39 39 H 1.08998 * 113.80707 * 40.15919 * 10 9 7 40 40 H 1.09000 * 113.80555 * 268.64361 * 10 9 7 41 41 H 1.09000 * 109.55268 * 260.27247 * 13 11 10 42 42 H 1.09003 * 109.55075 * 20.46474 * 13 11 10 43 43 H 1.09007 * 109.59219 * 56.99699 * 14 13 11 44 44 H 1.09003 * 109.59684 * 177.43888 * 14 13 11 45 45 H 1.08998 * 109.47059 * 183.53261 * 16 15 14 46 46 H 1.08994 * 109.47718 * 303.53461 * 16 15 14 47 47 H 0.96996 * 119.99988 * 0.02562 * 19 17 16 48 48 H 0.97004 * 119.99896 * 180.02562 * 23 22 20 49 49 H 1.09002 * 108.49689 * 190.00075 * 28 15 14 50 50 H 1.09004 * 108.37371 * 72.45983 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6114 1.9793 0.8462 5 8 1.6535 2.0844 -1.2167 6 6 0.7369 3.1661 -1.0374 7 6 3.5428 1.4439 0.1132 8 8 4.2204 1.8343 -0.8138 9 7 4.1337 1.0114 1.2447 10 6 3.6512 0.5698 2.5693 11 6 4.9641 -0.2398 2.6544 12 1 5.4477 -0.2352 3.6312 13 6 4.7877 -1.6430 2.0675 14 6 6.0439 -2.0160 1.2766 15 7 6.1929 -1.0794 0.1604 16 6 7.2240 -1.5402 -0.7789 17 6 6.7955 -2.8477 -1.3935 18 8 5.7355 -3.3469 -1.0796 19 7 7.5899 -3.4624 -2.2921 20 6 7.2003 -4.6522 -2.8509 21 1 6.2565 -5.0967 -2.5714 22 6 8.0196 -5.2862 -3.7769 23 7 9.1681 -4.7457 -4.1167 24 14 7.4890 -6.9076 -4.5377 25 1 6.7136 -6.6430 -5.7763 26 1 8.6902 -7.7157 -4.8687 27 1 6.6414 -7.6533 -3.5728 28 6 6.4554 0.2836 0.5953 29 6 5.5232 0.7852 1.6677 30 1 5.9393 1.6549 2.1763 31 1 -0.3633 0.4877 0.9047 32 1 -0.3633 0.5397 -0.8745 33 1 -0.3633 -1.0271 -0.0299 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.5696 3.6627 -1.9932 37 1 -0.2093 2.7813 -0.6574 38 1 1.1516 3.8793 -0.3251 39 1 2.7548 -0.0489 2.5272 40 1 3.5815 1.3734 3.3025 41 1 4.6388 -2.3600 2.8748 42 1 3.9224 -1.6551 1.4047 43 1 6.9173 -1.9508 1.9256 44 1 5.9462 -3.0316 0.8929 45 1 7.3586 -0.7964 -1.5642 46 1 8.1645 -1.6802 -0.2461 47 1 8.4377 -3.0634 -2.5429 48 1 9.7400 -5.1881 -4.7634 49 1 6.3761 0.9436 -0.2686 50 1 7.4764 0.3328 0.9739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221417834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:42 Heat of formation + Delta-G solvation = -66.226549 kcal Electronic energy + Delta-G solvation = -31350.012521 eV Core-core repulsion = 27186.064032 eV Total energy + Delta-G solvation = -4163.948490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18040 -39.16781 -38.27912 -37.13709 -35.92845 -33.80258 -33.56793 -31.97346 -31.13573 -30.01005 -28.68564 -27.78897 -25.88869 -25.86899 -24.01421 -23.56066 -22.24796 -21.66095 -20.23076 -19.14732 -18.13246 -17.81517 -17.32951 -16.99231 -16.34040 -15.87910 -15.68056 -15.51195 -14.96829 -14.84043 -14.50877 -14.27480 -14.06765 -13.87865 -13.69141 -13.61445 -13.52015 -13.10407 -12.97686 -12.59375 -12.38126 -12.32472 -12.09189 -11.86236 -11.70458 -11.64596 -11.50286 -11.44050 -11.28671 -11.03749 -11.00233 -10.82481 -10.46706 -10.34725 -10.30087 -10.16994 -10.12804 -9.39983 -9.16671 -8.66703 -8.29157 -7.90186 -7.65906 -6.35856 -3.76313 2.57382 2.72817 3.21992 3.30022 3.35520 3.66057 3.94990 3.98741 4.19450 4.30206 4.32124 4.62914 4.67410 4.77151 4.83887 4.99902 5.06438 5.08643 5.13550 5.15249 5.21050 5.22082 5.29774 5.31830 5.35394 5.45325 5.48007 5.55816 5.59683 5.62895 5.79581 5.84816 5.87211 5.93170 5.99365 6.04511 6.08001 6.14843 6.17808 6.36168 6.49985 6.55767 6.91804 7.43016 7.60311 7.63817 7.74779 8.12862 8.30006 8.68469 9.24112 9.61341 10.13282 10.82088 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.003032 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.308645 B = 9231.608548 C =10128.944270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.083 3.917 4 H 0.080 0.920 5 O -0.354 6.354 6 C 0.029 3.971 7 C 0.533 3.467 8 O -0.514 6.514 9 N -0.632 5.632 10 C 0.096 3.904 11 C -0.117 4.117 12 H 0.094 0.906 13 C -0.093 4.093 14 C 0.055 3.945 15 N -0.516 5.516 16 C 0.053 3.947 17 C 0.447 3.553 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.056 3.944 29 C 0.149 3.851 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.019 0.981 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.090 0.910 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 14.213 16.689 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.021 3.979 4 H 0.098 0.902 5 O -0.272 6.272 6 C -0.068 4.068 7 C 0.321 3.679 8 O -0.388 6.388 9 N -0.371 5.371 10 C -0.026 4.026 11 C -0.136 4.136 12 H 0.112 0.888 13 C -0.131 4.131 14 C -0.072 4.072 15 N -0.241 5.241 16 C -0.078 4.078 17 C 0.232 3.768 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.072 4.072 29 C 0.046 3.954 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.038 0.962 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.758 14.069 15.605 24.581 hybrid contribution 1.031 -0.213 0.062 1.054 sum -11.728 13.855 15.667 23.978 Atomic orbital electron populations 1.21755 0.94936 1.02375 1.01584 1.21840 0.96614 0.94022 1.04402 1.21962 0.91529 0.95784 0.88624 0.90200 1.88074 1.63495 1.47707 1.27876 1.22924 0.92082 0.89131 1.02671 1.20342 0.89833 0.76512 0.81169 1.90705 1.65237 1.45313 1.37509 1.49777 1.08805 1.66713 1.11757 1.23529 0.98628 0.96841 0.83645 1.23079 0.95802 0.95976 0.98744 0.88760 1.21412 0.99951 0.92935 0.98794 1.22151 0.95184 0.99225 0.90677 1.60118 1.47031 1.00354 1.16571 1.21761 0.92349 0.97563 0.96169 1.19719 0.86363 0.86765 0.83924 1.90460 1.24038 1.67354 1.64243 1.41864 1.19860 1.21141 1.37292 1.19686 1.05394 0.97297 1.20270 0.87951 1.25251 0.95433 0.99876 0.97437 1.69617 1.10857 1.40110 1.33820 0.85869 0.77868 0.81228 0.79376 1.20420 1.21002 1.19458 1.21299 0.95715 0.91538 0.98670 1.21991 0.83831 0.96493 0.93112 0.89488 0.93132 0.92141 0.91956 0.89772 0.90252 0.89299 0.93863 0.94166 0.89726 0.89872 0.91288 0.90486 0.96238 0.87318 0.89460 0.93648 0.77512 0.91938 0.89146 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.72 37.16 0.36 -0.98 16 2 C -0.13 -1.52 5.60 -26.73 -0.15 -1.67 16 3 C 0.08 1.01 2.43 -27.89 -0.07 0.94 16 4 H 0.08 0.73 7.58 -51.93 -0.39 0.33 16 5 O -0.35 -4.94 9.38 -55.05 -0.52 -5.45 16 6 C 0.03 0.26 10.60 101.05 1.07 1.33 16 7 C 0.53 8.17 7.28 -10.99 -0.08 8.09 16 8 O -0.51 -10.29 15.88 -14.27 -0.23 -10.52 16 9 N -0.63 -7.77 3.33 -173.27 -0.58 -8.35 16 10 C 0.10 0.77 7.67 -2.88 -0.02 0.75 16 11 C -0.12 -1.10 4.45 -89.91 -0.40 -1.50 16 12 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 13 C -0.09 -1.15 5.72 -26.64 -0.15 -1.31 16 14 C 0.05 0.88 5.09 -4.03 -0.02 0.86 16 15 N -0.52 -9.14 4.34 -239.07 -1.04 -10.18 16 16 C 0.05 1.02 5.42 -4.98 -0.03 0.99 16 17 C 0.45 10.89 7.41 -10.98 -0.08 10.81 16 18 O -0.58 -15.66 13.76 5.54 0.08 -15.58 16 19 N -0.56 -14.76 5.29 -10.96 -0.06 -14.82 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.15 13.05 55.50 0.72 -24.42 16 24 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.06 0.84 5.06 -5.76 -0.03 0.81 16 29 C 0.15 1.74 4.29 -69.18 -0.30 1.44 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.57 7.14 -51.93 -0.37 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 0.83 6.00 -51.93 -0.31 0.52 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.31 7.54 -51.93 -0.39 -0.08 16 38 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 39 H 0.08 0.60 6.26 -51.93 -0.33 0.27 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.11 7.63 -51.93 -0.40 0.72 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.11 2.16 5.55 -51.93 -0.29 1.87 16 45 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.39 9.87 7.90 -40.82 -0.32 9.55 16 48 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.09 1.56 6.90 -51.93 -0.36 1.21 16 50 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -35.68 395.42 -8.97 -44.65 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.15 Total: 9.79 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -0.13 Total: 12.47 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.95 Total: -57.77 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.67 Total: -31.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.68 -8.97 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221417834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.581 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds