Wall clock time and date at job start Tue Mar 31 2020 23:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00014 * 2 1 4 4 C 1.52998 * 109.47409 * 119.99668 * 3 2 1 5 5 O 1.42902 * 109.46987 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47424 * 240.00167 * 3 2 1 7 7 C 1.50691 * 109.47041 * 60.12352 * 6 3 2 8 8 O 1.21286 * 120.00488 * 354.31704 * 7 6 3 9 9 N 1.34779 * 120.00025 * 174.31446 * 7 6 3 10 10 C 1.46500 * 119.99934 * 179.97438 * 9 7 6 11 11 C 1.53123 * 109.52257 * 154.99933 * 10 9 7 12 12 C 1.53030 * 109.28045 * 177.62054 * 11 10 9 13 13 N 1.46854 * 109.52673 * 300.82556 * 12 11 10 14 14 C 1.46894 * 110.99937 * 185.83813 * 13 12 11 15 15 C 1.50703 * 109.46901 * 169.99866 * 14 13 12 16 16 O 1.21287 * 120.00205 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99989 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00144 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99936 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00367 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99884 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00211 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47356 * 119.99366 * 22 20 18 25 25 H 1.48498 * 109.47124 * 239.99487 * 22 20 18 26 26 C 1.46846 * 111.19713 * 61.73919 * 13 12 11 27 27 C 1.53040 * 109.52270 * 298.25892 * 26 13 12 28 28 H 1.08003 * 119.99774 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00150 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47744 * 184.93758 * 4 3 2 32 32 H 1.09003 * 109.47312 * 304.94671 * 4 3 2 33 33 H 1.09001 * 109.47075 * 64.93480 * 4 3 2 34 34 H 0.96703 * 113.99579 * 299.99304 * 5 3 2 35 35 H 1.08993 * 109.46725 * 300.12270 * 6 3 2 36 36 H 1.09000 * 109.47012 * 180.12224 * 6 3 2 37 37 H 0.96993 * 119.99778 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.52586 * 34.87302 * 10 9 7 39 39 H 1.09003 * 109.50059 * 57.68283 * 11 10 9 40 40 H 1.08998 * 109.53658 * 297.58737 * 11 10 9 41 41 H 1.08997 * 109.46503 * 180.80178 * 12 11 10 42 42 H 1.09001 * 109.45111 * 60.83305 * 12 11 10 43 43 H 1.09001 * 109.47541 * 49.99854 * 14 13 12 44 44 H 1.09005 * 109.47558 * 289.99505 * 14 13 12 45 45 H 0.97001 * 120.00360 * 0.02562 * 17 15 14 46 46 H 0.96995 * 120.00206 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.46301 * 58.27394 * 26 13 12 48 48 H 1.09002 * 109.46052 * 178.24646 * 26 13 12 49 49 H 1.08994 * 109.50563 * 299.24239 * 27 26 13 50 50 H 1.09002 * 109.49752 * 179.12029 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3862 -1.2493 7 6 2.0765 1.3095 -2.4796 8 8 0.8872 1.0974 -2.3716 9 7 2.6229 1.4766 -3.7003 10 6 1.7804 1.4014 -4.8965 11 6 2.4287 2.2011 -6.0300 12 6 1.5750 2.0701 -7.2933 13 7 1.4673 0.6543 -7.6683 14 6 0.7711 0.5015 -8.9527 15 6 0.8935 -0.9248 -9.4237 16 8 1.5012 -1.7342 -8.7554 17 7 0.3276 -1.3010 -10.5877 18 6 0.4393 -2.5983 -11.0164 19 1 0.9804 -3.3190 -10.4213 20 6 -0.1437 -2.9861 -12.2166 21 7 -0.8026 -2.1093 -12.9406 22 14 0.0080 -4.7540 -12.8005 23 1 0.7926 -5.5362 -11.8117 24 1 -1.3462 -5.3473 -12.9393 25 1 0.6985 -4.7837 -14.1148 26 6 0.8049 -0.1251 -6.6146 27 6 1.6357 -0.0597 -5.3311 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 3.4205 2.3651 1.2946 32 1 2.3276 1.2406 2.1371 33 1 3.7077 0.6106 1.2062 34 1 0.5433 2.4033 -0.7643 35 1 3.6499 0.5565 -1.2503 36 1 3.4897 2.3293 -1.2481 37 1 3.5740 1.6458 -3.7868 38 1 0.7964 1.8149 -4.6756 39 1 3.4282 1.8121 -6.2244 40 1 2.4961 3.2506 -5.7435 41 1 2.0413 2.6267 -8.1061 42 1 0.5799 2.4719 -7.1021 43 1 1.2191 1.1674 -9.6903 44 1 -0.2819 0.7537 -8.8276 45 1 -0.1581 -0.6536 -11.1224 46 1 -1.2099 -2.3800 -13.7782 47 1 -0.1866 0.2871 -6.4269 48 1 0.7120 -1.1629 -6.9346 49 1 2.6227 -0.4842 -5.5144 50 1 1.1358 -0.6254 -4.5449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227113575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:43 Heat of formation + Delta-G solvation = -101.206939 kcal Electronic energy + Delta-G solvation = -29868.033524 eV Core-core repulsion = 25702.568171 eV Total energy + Delta-G solvation = -4165.465353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.63695 -39.26888 -38.15772 -37.29503 -34.98232 -33.86203 -33.21167 -32.14534 -31.29486 -31.01553 -30.72765 -28.61147 -26.93408 -24.56232 -23.16488 -23.09035 -22.29775 -20.72214 -20.01798 -19.67611 -19.18941 -17.85815 -17.45068 -17.12423 -16.53128 -15.98115 -15.79834 -15.58119 -15.01408 -14.93233 -14.60032 -14.51184 -13.99709 -13.90463 -13.76092 -13.44079 -13.35525 -13.07807 -12.92944 -12.77460 -12.49790 -12.32839 -12.24293 -11.95301 -11.88613 -11.68912 -11.50101 -11.25409 -11.19668 -11.11442 -11.08101 -10.66637 -10.55107 -10.34286 -10.33535 -10.22649 -10.14002 -9.49555 -9.27485 -9.13996 -8.43485 -7.97655 -7.84317 -6.41751 -3.82381 2.22984 2.40891 2.92632 3.16101 3.26690 3.33786 3.90245 3.97469 3.98057 4.24276 4.34646 4.42359 4.54027 4.65267 4.88298 5.01092 5.03020 5.06581 5.07220 5.14246 5.21462 5.25286 5.32457 5.42363 5.46524 5.48812 5.54774 5.62713 5.67892 5.78429 5.80065 5.82251 5.87520 5.96575 5.99455 6.09239 6.23747 6.29592 6.45198 6.49527 6.53076 6.68103 7.24374 7.31151 7.42145 7.45670 7.55513 8.00951 8.06894 8.62010 9.18418 9.54862 10.06593 10.76091 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.001960 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.977539 B =14283.989124 C =14964.952780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.193 4.193 3 C 0.178 3.822 4 C -0.135 4.135 5 O -0.562 6.562 6 C -0.169 4.169 7 C 0.514 3.486 8 O -0.536 6.536 9 N -0.723 5.723 10 C 0.143 3.857 11 C -0.120 4.120 12 C 0.058 3.942 13 N -0.516 5.516 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.056 3.944 27 C -0.118 4.118 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.385 0.615 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.023 0.977 48 H 0.106 0.894 49 H 0.073 0.927 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 11.803 21.845 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.211 4.211 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.209 4.209 7 C 0.300 3.700 8 O -0.414 6.414 9 N -0.373 5.373 10 C 0.039 3.961 11 C -0.158 4.158 12 C -0.071 4.071 13 N -0.241 5.241 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.072 4.072 27 C -0.157 4.157 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.041 0.959 48 H 0.124 0.876 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.357 11.035 22.680 26.273 hybrid contribution -0.850 -0.272 -1.450 1.703 sum 6.506 10.763 21.230 24.675 Atomic orbital electron populations 1.23632 0.95977 1.01713 0.97078 1.23205 0.96825 0.97669 1.03399 1.19791 0.88080 0.85371 0.93070 1.21711 0.98737 1.02541 0.96199 1.86436 1.50937 1.48786 1.51047 1.22459 0.99818 1.05196 0.93410 1.20619 0.88878 0.75830 0.84643 1.90681 1.15902 1.48268 1.86511 1.46158 1.12279 1.72962 1.05935 1.21121 0.94761 0.96799 0.83418 1.21828 1.00573 0.99502 0.93935 1.22025 0.98291 0.89861 0.96898 1.61540 1.52739 1.07715 1.02086 1.21834 0.97064 0.97716 0.91902 1.19745 0.84661 0.89067 0.83594 1.90481 1.45666 1.53554 1.56435 1.41880 1.47916 1.11443 1.18920 1.19741 1.32187 0.86531 1.04225 0.87874 1.25265 0.96619 0.99916 0.96243 1.69620 1.35470 1.34610 1.14641 0.85804 0.77971 0.81991 0.78598 1.19238 1.20791 1.20773 1.22210 0.93582 1.01376 0.90079 1.21896 1.01772 0.95278 0.96783 0.88842 0.88151 0.87386 0.91643 0.91493 0.91011 0.76271 0.87800 0.88186 0.76693 0.89787 0.90394 0.91221 0.90303 0.95011 0.89313 0.93462 0.77502 0.91947 0.95883 0.87577 0.90836 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 12.60 29.01 0.37 -1.16 16 2 C -0.19 -1.84 7.47 -36.03 -0.27 -2.11 16 3 C 0.18 1.52 1.08 -91.77 -0.10 1.42 16 4 C -0.13 -0.89 8.82 37.16 0.33 -0.56 16 5 O -0.56 -5.91 11.92 -51.73 -0.62 -6.53 16 6 C -0.17 -1.17 4.97 -27.89 -0.14 -1.31 16 7 C 0.51 4.99 7.29 -10.99 -0.08 4.91 16 8 O -0.54 -6.81 11.62 -10.94 -0.13 -6.94 16 9 N -0.72 -6.30 5.08 -53.69 -0.27 -6.57 16 10 C 0.14 1.58 2.52 -67.81 -0.17 1.41 16 11 C -0.12 -1.19 5.57 -26.65 -0.15 -1.34 16 12 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 13 N -0.52 -8.35 4.40 -236.11 -1.04 -9.39 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.37 7.46 -10.98 -0.08 10.29 16 16 O -0.58 -15.33 13.90 5.55 0.08 -15.25 16 17 N -0.56 -14.24 5.29 -10.96 -0.06 -14.29 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 21 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 C 0.06 0.92 5.11 -3.83 -0.02 0.90 16 27 C -0.12 -1.64 5.68 -26.65 -0.15 -1.79 16 28 H 0.09 0.91 8.06 -52.48 -0.42 0.48 16 29 H 0.10 1.08 6.41 -52.49 -0.34 0.74 16 30 H 0.11 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.39 4.12 5.79 45.56 0.26 4.39 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.40 2.45 8.61 -40.82 -0.35 2.10 16 38 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 44 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 45 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 2.15 5.78 -51.93 -0.30 1.85 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -32.54 398.11 -8.79 -41.32 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -7.70 Total: 15.23 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.75 Total: 4.18 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.64 Total: -54.04 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.67 Total: -28.73 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.54 -8.79 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227113575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.882 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds