Wall clock time and date at job start Tue Mar 31 2020 23:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 120.00260 * 2 1 4 4 C 1.53003 * 109.47217 * 119.99472 * 3 2 1 5 5 O 1.42901 * 109.46719 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.47344 * 240.00045 * 3 2 1 7 7 C 1.50702 * 109.46911 * 55.85998 * 6 3 2 8 8 O 1.21283 * 120.00211 * 5.68677 * 7 6 3 9 9 N 1.34775 * 119.99417 * 185.69099 * 7 6 3 10 10 C 1.46500 * 120.00507 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99492 * 180.02562 * 9 7 6 12 12 C 1.52994 * 109.47485 * 89.99818 * 11 9 7 13 13 H 1.09000 * 112.74560 * 75.77008 * 12 11 9 14 14 C 1.53510 * 113.47768 * 206.61901 * 12 11 9 15 15 C 1.53514 * 83.57808 * 140.78859 * 14 12 11 16 16 N 1.47478 * 87.92922 * 333.97362 * 15 14 12 17 17 C 1.46905 * 110.99617 * 138.70065 * 16 15 14 18 18 C 1.50695 * 109.46959 * 74.03148 * 17 16 15 19 19 O 1.21293 * 120.00061 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00242 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00138 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00179 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99912 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99791 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99991 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46967 * 90.00776 * 25 23 21 27 27 H 1.48497 * 109.47155 * 210.00214 * 25 23 21 28 28 H 1.48493 * 109.47214 * 330.00569 * 25 23 21 29 29 H 1.08001 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99886 * 179.72445 * 1 2 3 31 31 H 1.08001 * 120.00169 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46684 * 64.95073 * 4 3 2 33 33 H 1.09001 * 109.47050 * 184.94663 * 4 3 2 34 34 H 1.08996 * 109.47052 * 304.94790 * 4 3 2 35 35 H 0.96707 * 114.00002 * 300.00235 * 5 3 2 36 36 H 1.08998 * 109.46727 * 175.85802 * 6 3 2 37 37 H 1.08996 * 109.46848 * 295.85865 * 6 3 2 38 38 H 1.09000 * 109.46289 * 90.00481 * 10 9 7 39 39 H 1.08992 * 109.47043 * 210.00127 * 10 9 7 40 40 H 1.08998 * 109.46785 * 330.00598 * 10 9 7 41 41 H 1.09003 * 109.46770 * 210.00079 * 11 9 7 42 42 H 1.08997 * 109.47340 * 329.99166 * 11 9 7 43 43 H 1.09002 * 114.17323 * 254.43872 * 14 12 11 44 44 H 1.09001 * 114.17123 * 27.14209 * 14 12 11 45 45 H 1.09000 * 113.47501 * 219.20643 * 15 14 12 46 46 H 1.08996 * 113.52647 * 88.74821 * 15 14 12 47 47 H 1.09002 * 109.46840 * 194.02550 * 17 16 15 48 48 H 1.09003 * 109.47124 * 314.02753 * 17 16 15 49 49 H 0.96995 * 119.99443 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99595 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3862 -1.2493 7 6 2.0891 1.2045 -2.4776 8 8 0.8831 1.1310 -2.3722 9 7 2.6657 1.1238 -3.6931 10 6 4.1224 1.2131 -3.8204 11 6 1.8354 0.9478 -4.8873 12 6 1.4472 2.3184 -5.4452 13 1 2.2667 2.8059 -5.9733 14 6 0.1304 2.3070 -6.2340 15 6 -0.0958 3.6584 -5.5418 16 7 0.7850 3.1892 -4.4561 17 6 1.6867 4.2598 -4.0100 18 6 0.9107 5.2641 -3.1976 19 8 -0.2768 5.1042 -3.0092 20 7 1.5359 6.3408 -2.6813 21 6 0.8299 7.2547 -1.9427 22 1 -0.2273 7.1119 -1.7742 23 6 1.4746 8.3644 -1.4099 24 7 2.7610 8.5379 -1.6145 25 14 0.5124 9.6101 -0.4041 26 1 0.5393 9.2171 1.0277 27 1 1.1267 10.9530 -0.5604 28 1 -0.8937 9.6505 -0.8800 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8500 -0.9353 0.0004 32 1 3.7078 0.6108 1.2061 33 1 3.4204 2.3651 1.2947 34 1 2.3276 1.2406 2.1370 35 1 0.5432 2.4033 -0.7642 36 1 3.4316 2.3599 -1.2870 37 1 3.6990 0.6017 -1.2129 38 1 4.5550 0.2150 -3.7504 39 1 4.3765 1.6524 -4.7850 40 1 4.5193 1.8381 -3.0205 41 1 2.3956 0.3941 -5.6408 42 1 0.9342 0.3937 -4.6248 43 1 0.2567 2.3746 -7.3146 44 1 -0.5665 1.5267 -5.9280 45 1 -1.1270 3.8175 -5.2264 46 1 0.3107 4.5045 -6.0959 47 1 2.4816 3.8337 -3.3978 48 1 2.1221 4.7536 -4.8787 49 1 2.4855 6.4688 -2.8323 50 1 3.2110 9.3127 -1.2429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233977533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:48 Heat of formation + Delta-G solvation = -75.263018 kcal Electronic energy + Delta-G solvation = -32237.167663 eV Core-core repulsion = 28072.827323 eV Total energy + Delta-G solvation = -4164.340340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.72752 -40.81163 -39.57894 -38.57638 -36.21810 -35.92569 -33.88964 -33.33230 -32.44099 -31.90564 -30.32858 -28.58998 -27.53910 -27.08055 -25.33259 -24.39334 -23.15334 -21.12504 -20.74773 -20.50183 -19.99253 -19.90545 -18.14181 -17.79859 -17.54300 -17.17394 -17.15969 -16.86081 -16.46612 -15.97970 -15.86815 -15.60900 -15.51663 -15.10795 -14.85369 -14.28270 -14.03009 -14.01260 -13.69025 -13.55284 -13.51243 -13.24651 -13.13297 -13.06620 -12.98094 -12.88405 -12.84081 -12.55116 -12.51461 -12.44931 -12.30107 -12.15299 -11.90157 -11.89363 -11.55767 -11.45083 -11.00292 -10.67918 -10.35555 -10.01436 -10.00363 -9.71923 -9.28556 -8.47795 -5.95450 1.34791 1.37857 1.48295 1.50455 1.88490 2.04839 2.18141 2.27845 2.91212 3.18553 3.34041 3.36395 3.60533 3.67560 3.85956 3.88096 3.89218 4.18444 4.24621 4.26175 4.31027 4.37957 4.40244 4.42387 4.48156 4.49956 4.60457 4.65839 4.68556 4.79749 4.85846 4.87845 4.91725 4.98921 5.02090 5.04262 5.14200 5.25726 5.28047 5.38885 5.46149 5.69976 5.78898 5.94185 5.98646 6.18294 6.56196 6.60199 6.75900 7.12760 7.47467 7.54955 8.12584 8.69942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.004560 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.435665 B = 6139.183262 C = 7816.049054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.160 3.840 4 C -0.132 4.132 5 O -0.585 6.585 6 C -0.160 4.160 7 C 0.508 3.492 8 O -0.542 6.542 9 N -0.615 5.615 10 C 0.070 3.930 11 C 0.139 3.861 12 C 0.009 3.991 13 H 0.094 0.906 14 C -0.113 4.113 15 C -0.002 4.002 16 N -0.444 5.444 17 C 0.035 3.965 18 C 0.443 3.557 19 O -0.616 6.616 20 N -0.573 5.573 21 C -0.329 4.329 22 H 0.072 0.928 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.266 1.266 28 H -0.275 1.275 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.380 0.620 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.394 0.606 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.584 -19.856 -7.213 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.119 3.881 4 C -0.189 4.189 5 O -0.396 6.396 6 C -0.199 4.199 7 C 0.296 3.704 8 O -0.420 6.420 9 N -0.349 5.349 10 C -0.072 4.072 11 C 0.016 3.984 12 C -0.102 4.102 13 H 0.112 0.888 14 C -0.151 4.151 15 C -0.132 4.132 16 N -0.166 5.166 17 C -0.097 4.097 18 C 0.230 3.770 19 O -0.501 6.501 20 N -0.211 5.211 21 C -0.459 4.459 22 H 0.090 0.910 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.190 1.190 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.232 0.768 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.108 0.892 48 H 0.086 0.914 49 H 0.227 0.773 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.343 -19.966 -5.779 22.397 hybrid contribution -0.135 1.617 -0.558 1.716 sum 8.208 -18.349 -6.337 21.076 Atomic orbital electron populations 1.23615 0.96765 1.01015 0.99070 1.23410 0.96403 0.98339 1.01614 1.20202 0.88260 0.84726 0.94893 1.21747 0.98888 1.03271 0.94968 1.86470 1.51664 1.50436 1.50983 1.22427 0.99764 1.05451 0.92304 1.20764 0.88528 0.75858 0.85239 1.90678 1.15972 1.49318 1.85984 1.47790 1.08249 1.73059 1.05792 1.22048 0.77974 1.03124 1.04082 1.21446 0.95769 0.94518 0.86676 1.24024 0.97223 0.96285 0.92638 0.88849 1.23069 0.96033 0.95798 1.00172 1.23615 0.99021 0.98002 0.92534 1.68959 1.11516 1.11480 1.24690 1.22224 0.95696 0.92870 0.98930 1.20738 0.88301 0.83632 0.84342 1.90504 1.17689 1.77558 1.64345 1.41884 1.11385 1.20773 1.47058 1.19567 0.94514 1.02578 1.29242 0.91018 1.25955 0.96830 0.99521 0.98691 1.69661 1.09412 1.30821 1.46149 0.84999 0.78008 0.77484 0.78273 1.19910 1.18995 1.20024 0.91005 0.87491 0.84828 0.87590 0.92575 0.92511 0.76796 0.88860 0.84900 0.90351 0.89582 0.91061 0.86697 0.91538 0.87593 0.89255 0.93090 0.91988 0.89231 0.91410 0.77296 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 12.63 67.79 0.86 -4.17 16 2 C -0.18 -4.71 7.43 25.66 0.19 -4.52 16 3 C 0.16 4.55 1.08 -11.54 -0.01 4.54 16 4 C -0.13 -3.06 8.82 71.98 0.64 -2.42 16 5 O -0.58 -23.82 11.94 -132.63 -1.58 -25.40 16 6 C -0.16 -3.71 3.46 29.85 0.10 -3.60 16 7 C 0.51 13.73 6.25 87.66 0.55 14.28 16 8 O -0.54 -19.21 10.97 13.31 0.15 -19.06 16 9 N -0.62 -12.19 2.74 -846.77 -2.32 -14.51 16 10 C 0.07 0.80 10.14 127.77 1.30 2.09 16 11 C 0.14 2.62 5.58 86.38 0.48 3.11 16 12 C 0.01 0.19 3.37 42.19 0.14 0.33 16 13 H 0.09 1.71 7.77 -2.39 -0.02 1.69 16 14 C -0.11 -2.44 8.00 30.94 0.25 -2.19 16 15 C 0.00 -0.08 6.71 83.58 0.56 0.48 16 16 N -0.44 -15.13 4.66 -906.68 -4.23 -19.36 16 17 C 0.03 1.29 5.31 85.55 0.45 1.75 16 18 C 0.44 22.69 7.62 87.65 0.67 23.36 16 19 O -0.62 -36.96 15.34 -3.07 -0.05 -37.01 16 20 N -0.57 -31.18 5.29 -306.98 -1.62 -32.81 16 21 C -0.33 -19.79 9.68 84.04 0.81 -18.97 16 22 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -51.05 13.05 21.66 0.28 -50.77 16 25 Si 0.99 45.21 29.55 68.60 2.03 47.23 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 H 0.07 2.63 6.41 -2.91 -0.02 2.61 16 30 H 0.11 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.38 17.22 5.78 -74.05 -0.43 16.80 16 36 H 0.09 2.32 7.69 -2.39 -0.02 2.31 16 37 H 0.13 1.93 7.94 -2.39 -0.02 1.91 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.73 8.07 -2.39 -0.02 0.71 16 40 H 0.07 0.84 6.60 -2.39 -0.02 0.83 16 41 H 0.12 1.24 8.07 -2.39 -0.02 1.22 16 42 H 0.07 1.60 7.15 -2.39 -0.02 1.58 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 45 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 46 H 0.06 1.95 7.70 -2.39 -0.02 1.93 16 47 H 0.09 3.13 7.68 -2.39 -0.02 3.11 16 48 H 0.07 2.22 7.56 -2.39 -0.02 2.20 16 49 H 0.39 20.26 7.90 -92.71 -0.73 19.53 16 50 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -81.39 401.14 -0.11 -81.49 By element: Atomic # 1 Polarization: 56.46 SS G_CDS: -0.21 Total: 56.24 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 7.45 Total: 13.94 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -7.89 Total: -117.44 kcal Atomic # 8 Polarization: -79.99 SS G_CDS: -1.48 Total: -81.47 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -81.39 -0.11 -81.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233977533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.228 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds