Wall clock time and date at job start Tue Mar 31 2020 23:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99769 * 2 1 4 4 C 1.52997 * 109.47103 * 240.00113 * 3 2 1 5 5 O 1.42895 * 109.47147 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46925 * 120.00282 * 3 2 1 7 7 C 1.50696 * 109.47300 * 180.02562 * 6 3 2 8 8 O 1.21279 * 119.99697 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99854 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99875 * 179.97438 * 9 7 6 12 12 C 1.53008 * 109.46798 * 90.00599 * 11 9 7 13 13 H 1.09001 * 112.95331 * 285.32933 * 12 11 9 14 14 C 1.53934 * 113.75873 * 153.68812 * 12 11 9 15 15 C 1.53939 * 86.34145 * 221.96008 * 14 12 11 16 16 N 1.47949 * 113.76104 * 56.97954 * 12 11 9 17 17 C 1.46900 * 111.00183 * 251.89929 * 16 12 11 18 18 C 1.50701 * 109.47628 * 169.99840 * 17 16 12 19 19 O 1.21294 * 119.99685 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00169 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99940 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00154 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00133 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00433 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99751 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47096 * 90.00659 * 25 23 21 27 27 H 1.48502 * 109.47446 * 210.00261 * 25 23 21 28 28 H 1.48505 * 109.47418 * 330.00151 * 25 23 21 29 29 H 1.08001 * 120.00229 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00332 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.08992 * 109.47280 * 59.99899 * 4 3 2 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47140 * 300.00046 * 4 3 2 35 35 H 0.96695 * 114.00385 * 59.99326 * 5 3 2 36 36 H 1.09004 * 109.46930 * 299.99901 * 6 3 2 37 37 H 1.09004 * 109.47059 * 59.99503 * 6 3 2 38 38 H 1.08990 * 109.47071 * 89.99723 * 10 9 7 39 39 H 1.08999 * 109.46626 * 210.00015 * 10 9 7 40 40 H 1.08996 * 109.47068 * 329.99428 * 10 9 7 41 41 H 1.08997 * 109.47346 * 210.00204 * 11 9 7 42 42 H 1.08999 * 109.47701 * 330.00788 * 11 9 7 43 43 H 1.09003 * 113.73308 * 336.31582 * 14 12 11 44 44 H 1.08997 * 113.73913 * 107.49167 * 14 12 11 45 45 H 1.09000 * 113.75969 * 138.03300 * 15 14 12 46 46 H 1.09000 * 113.75658 * 269.29193 * 15 14 12 47 47 H 1.08998 * 109.47367 * 290.00346 * 17 16 12 48 48 H 1.09007 * 109.46860 * 50.00100 * 17 16 12 49 49 H 0.96997 * 120.00046 * 0.02562 * 20 18 17 50 50 H 0.96999 * 120.00157 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2492 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6915 1.2496 8 8 3.5445 3.4793 0.3401 9 7 4.5380 2.9836 2.2608 10 6 4.7215 2.0317 3.3592 11 6 5.2704 4.2523 2.2608 12 6 4.4431 5.3187 2.9817 13 1 3.6030 5.6784 2.3876 14 6 5.2891 6.4438 3.6045 15 6 4.3539 6.3382 4.8227 16 7 4.0798 4.9544 4.3689 17 6 2.6490 4.6382 4.4726 18 6 2.3635 4.0399 5.8260 19 8 3.2636 3.8911 6.6253 20 7 1.1082 3.6702 6.1481 21 6 0.8486 3.1254 7.3791 22 1 1.6500 2.9929 8.0909 23 6 -0.4456 2.7438 7.7111 24 7 -0.6945 2.2221 8.8912 25 14 -1.8318 2.9736 6.4803 26 1 -1.9542 1.7558 5.6394 27 1 -3.1063 3.2033 7.2072 28 1 -1.5372 4.1446 5.6158 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 2.3164 1.3285 -2.1392 33 1 3.4883 2.3301 -1.2489 34 1 3.6514 0.5578 -1.2493 35 1 0.5438 2.4030 0.7658 36 1 2.3164 1.3284 2.1392 37 1 3.6514 0.5576 1.2492 38 1 5.5381 1.3514 3.1178 39 1 4.9590 2.5743 4.2742 40 1 3.8039 1.4614 3.5029 41 1 6.2226 4.1222 2.7750 42 1 5.4524 4.5669 1.2332 43 1 6.3184 6.1535 3.8152 44 1 5.2157 7.3931 3.0739 45 1 4.8720 6.3931 5.7802 46 1 3.4875 6.9975 4.7696 47 1 2.0653 5.5503 4.3481 48 1 2.3775 3.9241 3.6951 49 1 0.3885 3.7889 5.5088 50 1 -1.5979 1.9553 9.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233977537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:56 Heat of formation + Delta-G solvation = -45.319127 kcal Electronic energy + Delta-G solvation = -31518.088368 eV Core-core repulsion = 27355.046492 eV Total energy + Delta-G solvation = -4163.041876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61529 -39.73566 -38.11760 -37.76905 -35.31918 -33.96273 -33.13957 -31.75621 -31.59535 -30.78474 -29.36582 -27.76506 -26.22489 -25.87091 -23.72851 -23.50959 -22.46797 -19.85165 -19.70510 -19.39609 -19.01896 -18.35645 -17.28359 -16.81663 -16.29936 -16.05837 -15.92143 -15.63556 -15.19720 -15.05510 -14.81454 -14.58046 -14.14275 -13.61641 -13.56141 -13.24738 -13.19465 -12.91155 -12.69138 -12.54762 -12.41628 -12.34579 -12.23852 -12.13065 -11.84957 -11.66057 -11.61731 -11.51637 -11.37040 -11.18411 -11.14212 -10.85340 -10.64384 -10.62129 -10.30401 -9.99807 -9.65845 -9.58130 -9.49064 -8.96852 -8.47204 -8.24571 -8.19328 -6.33116 -3.84357 2.00288 2.65385 2.98981 3.00018 3.03220 3.12506 3.73052 3.90256 4.07769 4.09708 4.38854 4.52133 4.58667 4.74064 4.78380 4.81671 4.89540 5.03614 5.15071 5.16932 5.28165 5.30668 5.34581 5.40696 5.42797 5.52363 5.57072 5.59597 5.60612 5.67310 5.74595 5.75379 5.78042 5.89392 5.92378 5.97251 6.07594 6.21279 6.23347 6.35236 6.48062 6.50551 6.59106 7.13065 7.42648 7.56595 7.57398 8.12514 8.23475 8.58854 8.93833 9.40985 9.83022 10.80134 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008003 B = 0.004704 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.867054 B = 5951.204667 C = 8563.379060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.190 4.190 3 C 0.178 3.822 4 C -0.145 4.145 5 O -0.539 6.539 6 C -0.167 4.167 7 C 0.513 3.487 8 O -0.525 6.525 9 N -0.607 5.607 10 C 0.075 3.925 11 C 0.140 3.860 12 C 0.009 3.991 13 H 0.079 0.921 14 C -0.137 4.137 15 C 0.009 3.991 16 N -0.439 5.439 17 C 0.012 3.988 18 C 0.457 3.543 19 O -0.556 6.556 20 N -0.595 5.595 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.882 5.882 25 Si 0.877 3.123 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.370 0.630 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.368 0.632 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 -0.086 -18.521 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.208 4.208 3 C 0.136 3.864 4 C -0.202 4.202 5 O -0.344 6.344 6 C -0.207 4.207 7 C 0.301 3.699 8 O -0.401 6.401 9 N -0.339 5.339 10 C -0.068 4.068 11 C 0.017 3.983 12 C -0.102 4.102 13 H 0.097 0.903 14 C -0.175 4.175 15 C -0.120 4.120 16 N -0.162 5.162 17 C -0.121 4.121 18 C 0.242 3.758 19 O -0.437 6.437 20 N -0.235 5.235 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.522 5.522 25 Si 0.703 3.297 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.217 0.783 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.201 0.799 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.891 -0.300 -18.523 20.548 hybrid contribution -2.315 0.310 -0.400 2.369 sum 6.576 0.010 -18.922 20.033 Atomic orbital electron populations 1.23885 0.96069 1.02475 0.99066 1.23594 0.96767 0.98755 1.01684 1.19838 0.87998 0.84096 0.94425 1.21915 0.98814 1.04108 0.95340 1.86688 1.50107 1.48879 1.48771 1.22446 1.00514 0.97064 1.00705 1.20439 0.79419 0.88378 0.81673 1.90653 1.63831 1.50228 1.35393 1.47778 1.43993 1.19294 1.22874 1.21943 1.01303 0.92787 0.90801 1.21346 0.94080 0.82235 1.00667 1.23947 0.98759 0.95336 0.92156 0.90295 1.23355 0.99589 0.97900 0.96682 1.23889 0.98586 0.89970 0.99507 1.68340 1.16591 1.23063 1.08206 1.22462 0.91124 1.00488 0.97991 1.19601 0.83291 0.84286 0.88622 1.90557 1.44328 1.57618 1.51201 1.42244 1.07590 1.57592 1.16056 1.19406 0.96370 1.36387 0.91011 0.86321 1.25012 0.97315 0.97334 0.96411 1.69615 1.21546 1.41382 1.19693 0.86722 0.82855 0.78705 0.81407 1.19631 1.20160 1.19596 0.88189 0.87703 0.86686 0.92334 0.88830 0.92059 0.78303 0.88486 0.88132 0.93191 0.88459 0.91488 0.90024 0.89757 0.89050 0.91093 0.88943 0.91641 0.92749 0.90092 0.79925 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 13.93 29.02 0.40 -1.25 16 2 C -0.19 -1.79 8.77 -36.02 -0.32 -2.11 16 3 C 0.18 1.93 0.94 -91.77 -0.09 1.84 16 4 C -0.14 -1.59 8.51 37.16 0.32 -1.28 16 5 O -0.54 -6.77 10.84 -53.50 -0.58 -7.35 16 6 C -0.17 -1.74 3.48 -27.88 -0.10 -1.84 16 7 C 0.51 6.49 7.23 -10.99 -0.08 6.41 16 8 O -0.52 -8.03 12.54 -12.71 -0.16 -8.19 16 9 N -0.61 -7.20 2.80 -181.58 -0.51 -7.71 16 10 C 0.07 0.86 10.01 59.85 0.60 1.46 16 11 C 0.14 1.58 5.57 -4.04 -0.02 1.56 16 12 C 0.01 0.11 3.55 -66.66 -0.24 -0.13 16 13 H 0.08 1.05 7.92 -51.93 -0.41 0.63 16 14 C -0.14 -1.43 7.84 -25.79 -0.20 -1.63 16 15 C 0.01 0.12 7.96 -2.64 -0.02 0.10 16 16 N -0.44 -6.60 4.31 -231.16 -1.00 -7.60 16 17 C 0.01 0.20 5.28 -4.98 -0.03 0.17 16 18 C 0.46 10.11 7.83 -10.99 -0.09 10.03 16 19 O -0.56 -14.46 16.01 5.55 0.09 -14.37 16 20 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 21 C -0.30 -8.41 10.16 -14.93 -0.15 -8.56 16 22 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 25 Si 0.88 19.16 27.73 -169.99 -4.71 14.45 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 29 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.10 0.98 6.41 -52.48 -0.34 0.64 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.24 5.51 -51.93 -0.29 0.95 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.37 3.74 8.05 45.56 0.37 4.10 16 36 H 0.10 1.01 7.40 -51.93 -0.38 0.62 16 37 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.37 7.24 -51.93 -0.38 1.00 16 40 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 41 H 0.08 0.83 7.80 -51.93 -0.41 0.42 16 42 H 0.08 0.95 7.42 -51.93 -0.39 0.57 16 43 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 46 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 47 H 0.05 0.85 7.38 -51.93 -0.38 0.47 16 48 H 0.08 1.28 8.08 -51.92 -0.42 0.86 16 49 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 50 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -33.86 402.04 -7.52 -41.39 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -7.33 Total: 16.16 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.10 Total: 5.81 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.79 Total: -53.96 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.65 Total: -29.91 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.86 -7.52 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233977537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.932 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds