Wall clock time and date at job start Tue Mar 31 2020 23:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 120.00406 * 2 1 4 4 C 1.52997 * 109.47450 * 119.99657 * 3 2 1 5 5 O 1.42902 * 109.46660 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47124 * 240.00111 * 3 2 1 7 7 C 1.50703 * 109.47187 * 60.20487 * 6 3 2 8 8 O 1.21278 * 119.99838 * 353.97540 * 7 6 3 9 9 N 1.34777 * 119.99768 * 173.98201 * 7 6 3 10 10 C 1.46499 * 120.00205 * 0.02562 * 9 7 6 11 11 C 1.46501 * 119.99694 * 179.97438 * 9 7 6 12 12 C 1.52996 * 109.47160 * 269.99894 * 11 9 7 13 13 H 1.08998 * 112.96136 * 287.14238 * 12 11 9 14 14 C 1.53938 * 113.75584 * 155.49795 * 12 11 9 15 15 C 1.53943 * 86.34180 * 221.96454 * 14 12 11 16 16 N 1.47961 * 86.17805 * 23.71781 * 15 14 12 17 17 C 1.46901 * 111.00080 * 222.41909 * 16 15 14 18 18 C 1.50705 * 109.46983 * 269.36037 * 17 16 15 19 19 O 1.21291 * 120.00189 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99788 * 180.02562 * 18 17 16 21 21 C 1.37106 * 120.00000 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99710 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00123 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99758 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47062 * 90.00564 * 25 23 21 27 27 H 1.48505 * 109.46884 * 209.99729 * 25 23 21 28 28 H 1.48500 * 109.47501 * 330.00095 * 25 23 21 29 29 H 1.08002 * 119.99659 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00186 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00365 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47204 * 184.94572 * 4 3 2 33 33 H 1.09006 * 109.47143 * 304.94866 * 4 3 2 34 34 H 1.08996 * 109.47274 * 64.94649 * 4 3 2 35 35 H 0.96702 * 114.00525 * 299.99999 * 5 3 2 36 36 H 1.08997 * 109.46839 * 300.20368 * 6 3 2 37 37 H 1.08997 * 109.46933 * 180.20059 * 6 3 2 38 38 H 1.09007 * 109.46653 * 269.99855 * 10 9 7 39 39 H 1.08997 * 109.47267 * 29.99225 * 10 9 7 40 40 H 1.08991 * 109.47462 * 149.99785 * 10 9 7 41 41 H 1.09002 * 109.47076 * 150.00304 * 11 9 7 42 42 H 1.08999 * 109.46784 * 30.00301 * 11 9 7 43 43 H 1.08996 * 113.73499 * 336.31909 * 14 12 11 44 44 H 1.08999 * 113.73533 * 107.49970 * 14 12 11 45 45 H 1.08991 * 113.76370 * 138.03650 * 15 14 12 46 46 H 1.09000 * 113.75849 * 269.29687 * 15 14 12 47 47 H 1.08995 * 109.47226 * 29.36012 * 17 16 15 48 48 H 1.09004 * 109.47197 * 149.36609 * 17 16 15 49 49 H 0.97000 * 120.00272 * 0.02562 * 20 18 17 50 50 H 0.96991 * 120.00224 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0763 1.3114 -2.4797 8 8 0.8879 1.0946 -2.3720 9 7 2.6217 1.4854 -3.6998 10 6 4.0574 1.7466 -3.8300 11 6 1.7791 1.4122 -4.8960 12 6 1.7367 -0.0309 -5.4025 13 1 2.6690 -0.3443 -5.8721 14 6 0.4828 -0.3601 -6.2327 15 6 0.4463 -1.6946 -5.4661 16 7 1.2123 -0.9955 -4.4107 17 6 2.2872 -1.8492 -3.8873 18 6 1.7721 -2.6431 -2.7145 19 8 0.6226 -2.5112 -2.3507 20 7 2.5889 -3.4997 -2.0699 21 6 2.1202 -4.2224 -1.0032 22 1 1.0967 -4.1049 -0.6793 23 6 2.9621 -5.1060 -0.3389 24 7 4.2077 -5.2485 -0.7327 25 14 2.3236 -6.0900 1.1148 26 1 1.7617 -7.3772 0.6327 27 1 3.4385 -6.3591 2.0583 28 1 1.2633 -5.3161 1.8092 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 3.4205 2.3651 1.2946 33 1 2.3277 1.2405 2.1370 34 1 3.7079 0.6107 1.2061 35 1 0.5439 2.4031 -0.7659 36 1 3.6490 0.5555 -1.2511 37 1 3.4909 2.3284 -1.2474 38 1 4.2354 2.8216 -3.7978 39 1 4.5900 1.2654 -3.0098 40 1 4.4147 1.3474 -4.7791 41 1 2.1922 2.0574 -5.6715 42 1 0.7694 1.7408 -4.6498 43 1 -0.3661 0.2902 -6.0219 44 1 0.6792 -0.4701 -7.2992 45 1 -0.5542 -1.9958 -5.1561 46 1 0.9997 -2.4968 -5.9543 47 1 2.6225 -2.5312 -4.6686 48 1 3.1220 -1.2263 -3.5659 49 1 3.5083 -3.6050 -2.3605 50 1 4.7955 -5.8650 -0.2688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233977539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:00 Heat of formation + Delta-G solvation = -49.126898 kcal Electronic energy + Delta-G solvation = -32725.359655 eV Core-core repulsion = 28562.152662 eV Total energy + Delta-G solvation = -4163.206993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.44578 -39.45756 -37.74168 -37.29236 -35.15119 -33.79265 -32.55978 -31.29688 -30.98139 -30.40852 -29.26186 -27.60890 -26.27724 -25.64728 -23.59992 -23.42344 -21.87239 -19.56984 -19.29786 -19.12109 -18.88016 -17.80709 -16.96789 -16.36829 -16.12919 -16.01788 -15.72261 -15.47204 -14.83359 -14.70177 -14.38555 -14.16118 -13.84062 -13.69439 -13.34413 -13.11519 -12.99918 -12.57971 -12.50180 -12.29206 -12.22014 -12.20347 -11.96763 -11.69076 -11.53947 -11.44638 -11.40451 -11.25129 -11.18564 -10.96633 -10.74337 -10.51693 -10.50969 -10.35169 -10.14556 -9.68202 -9.47486 -9.40867 -8.74753 -8.41189 -8.28522 -7.98315 -7.86420 -6.35126 -3.74822 2.97136 3.09301 3.18447 3.21091 3.29185 3.35605 4.00428 4.04647 4.27745 4.54069 4.61410 4.68321 4.84652 4.98353 5.02798 5.11778 5.14737 5.21162 5.27768 5.28150 5.33742 5.47696 5.50915 5.57660 5.62400 5.67120 5.73410 5.74614 5.77744 5.83286 5.94733 6.01769 6.06078 6.09625 6.13199 6.32679 6.35149 6.38510 6.58582 6.79511 6.79891 7.34870 7.44838 7.53764 7.61221 7.63014 8.01581 8.14168 8.54732 8.71609 9.27312 9.63935 10.18455 10.83215 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.005190 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.299200 B = 5394.084457 C = 7071.773768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.184 4.184 3 C 0.180 3.820 4 C -0.133 4.133 5 O -0.566 6.566 6 C -0.164 4.164 7 C 0.515 3.485 8 O -0.490 6.490 9 N -0.622 5.622 10 C 0.079 3.921 11 C 0.141 3.859 12 C 0.004 3.996 13 H 0.071 0.929 14 C -0.134 4.134 15 C 0.008 3.992 16 N -0.416 5.416 17 C 0.013 3.987 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.575 5.575 21 C -0.290 4.290 22 H 0.100 0.900 23 C 0.021 3.979 24 N -0.907 5.907 25 Si 0.924 3.076 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.382 0.618 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.388 0.612 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 14.863 -8.897 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.202 4.202 3 C 0.139 3.861 4 C -0.190 4.190 5 O -0.376 6.376 6 C -0.204 4.204 7 C 0.303 3.697 8 O -0.363 6.363 9 N -0.357 5.357 10 C -0.065 4.065 11 C 0.018 3.982 12 C -0.108 4.108 13 H 0.089 0.911 14 C -0.173 4.173 15 C -0.121 4.121 16 N -0.138 5.138 17 C -0.119 4.119 18 C 0.237 3.763 19 O -0.438 6.438 20 N -0.213 5.213 21 C -0.419 4.419 22 H 0.118 0.882 23 C -0.180 4.180 24 N -0.549 5.549 25 Si 0.751 3.249 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.220 0.780 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.353 15.092 -7.322 16.829 hybrid contribution 1.052 -1.456 -0.874 1.998 sum 2.405 13.636 -8.196 16.091 Atomic orbital electron populations 1.23421 0.95945 1.00749 0.97127 1.23090 0.96893 0.97059 1.03176 1.19796 0.87940 0.85719 0.92638 1.21695 0.98901 1.01915 0.96518 1.86379 1.51073 1.49184 1.50946 1.22435 0.99919 1.04025 0.94012 1.20460 0.89039 0.76296 0.83912 1.90737 1.15518 1.44652 1.85398 1.47746 1.08414 1.73236 1.06314 1.21750 0.81246 1.00650 1.02855 1.21299 0.96649 0.94202 0.86079 1.23945 0.97166 0.95805 0.93836 0.91120 1.23318 0.97865 0.98100 0.97993 1.23836 1.01230 0.95054 0.92024 1.68496 1.15129 1.08987 1.21222 1.22449 0.95090 0.96392 0.97966 1.19642 0.87266 0.83516 0.85911 1.90552 1.18003 1.67515 1.67686 1.41867 1.12808 1.37354 1.29281 1.19626 0.98374 1.17746 1.06174 0.88184 1.25174 0.95238 0.98218 0.99371 1.69606 1.05284 1.37983 1.42043 0.85946 0.78258 0.79832 0.80825 1.20597 1.21026 1.19450 0.89417 0.88746 0.86900 0.92251 0.91626 0.90957 0.76637 0.88294 0.89174 0.92892 0.91152 0.91450 0.90885 0.89281 0.89092 0.91453 0.89247 0.92016 0.93404 0.90638 0.77971 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 12.60 29.02 0.37 -2.33 16 2 C -0.18 -3.54 7.47 -36.02 -0.27 -3.81 16 3 C 0.18 2.82 1.08 -91.77 -0.10 2.72 16 4 C -0.13 -1.82 8.83 37.16 0.33 -1.49 16 5 O -0.57 -9.16 11.92 -51.70 -0.62 -9.77 16 6 C -0.16 -2.23 3.44 -27.88 -0.10 -2.32 16 7 C 0.52 7.69 6.74 -10.98 -0.07 7.61 16 8 O -0.49 -8.92 10.97 -10.91 -0.12 -9.04 16 9 N -0.62 -7.37 2.85 -181.57 -0.52 -7.89 16 10 C 0.08 0.66 10.13 59.85 0.61 1.27 16 11 C 0.14 1.58 5.56 -4.04 -0.02 1.56 16 12 C 0.00 0.04 3.55 -66.65 -0.24 -0.19 16 13 H 0.07 0.79 7.93 -51.93 -0.41 0.38 16 14 C -0.13 -1.53 7.84 -25.79 -0.20 -1.73 16 15 C 0.01 0.11 7.95 -2.76 -0.02 0.09 16 16 N -0.42 -6.97 4.41 -232.12 -1.02 -8.00 16 17 C 0.01 0.24 5.28 -4.97 -0.03 0.22 16 18 C 0.45 10.71 7.83 -10.99 -0.09 10.62 16 19 O -0.56 -15.14 16.01 5.55 0.09 -15.05 16 20 N -0.57 -14.49 5.29 -10.96 -0.06 -14.54 16 21 C -0.29 -8.04 9.68 -14.93 -0.14 -8.18 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 24 N -0.91 -24.68 13.05 55.50 0.72 -23.95 16 25 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.09 1.62 6.41 -52.49 -0.34 1.28 16 30 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.38 6.18 5.79 45.56 0.26 6.44 16 36 H 0.10 1.35 7.70 -51.93 -0.40 0.95 16 37 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.59 6.61 -51.93 -0.34 0.25 16 40 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 41 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.09 1.16 7.19 -51.93 -0.37 0.79 16 43 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 47 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 48 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 403.76 15.07 6.08 6.08 Total: -1.00 -33.10 403.76 -8.20 -41.31 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -7.67 Total: 19.99 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.07 Total: 4.49 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.87 Total: -54.38 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.65 Total: -33.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.10 -8.20 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233977539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.817 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds