Wall clock time and date at job start Tue Mar 31 2020 23:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 120.00406 * 2 1 4 4 C 1.52997 * 109.47450 * 119.99657 * 3 2 1 5 5 O 1.42902 * 109.46660 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47124 * 240.00111 * 3 2 1 7 7 C 1.50703 * 109.47187 * 60.20487 * 6 3 2 8 8 O 1.21278 * 119.99838 * 353.97540 * 7 6 3 9 9 N 1.34777 * 119.99768 * 173.98201 * 7 6 3 10 10 C 1.46499 * 120.00205 * 0.02562 * 9 7 6 11 11 C 1.46501 * 119.99694 * 179.97438 * 9 7 6 12 12 C 1.52996 * 109.47160 * 269.99894 * 11 9 7 13 13 H 1.08998 * 112.96136 * 287.14238 * 12 11 9 14 14 C 1.53938 * 113.75584 * 155.49795 * 12 11 9 15 15 C 1.53943 * 86.34180 * 221.96454 * 14 12 11 16 16 N 1.47961 * 86.17805 * 23.71781 * 15 14 12 17 17 C 1.46901 * 111.00080 * 222.41909 * 16 15 14 18 18 C 1.50705 * 109.46983 * 269.36037 * 17 16 15 19 19 O 1.21291 * 120.00189 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99788 * 180.02562 * 18 17 16 21 21 C 1.37106 * 120.00000 * 180.02562 * 20 18 17 22 22 H 1.07995 * 119.99710 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00123 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99758 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47062 * 90.00564 * 25 23 21 27 27 H 1.48505 * 109.46884 * 209.99729 * 25 23 21 28 28 H 1.48500 * 109.47501 * 330.00095 * 25 23 21 29 29 H 1.08002 * 119.99659 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00186 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00365 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47204 * 184.94572 * 4 3 2 33 33 H 1.09006 * 109.47143 * 304.94866 * 4 3 2 34 34 H 1.08996 * 109.47274 * 64.94649 * 4 3 2 35 35 H 0.96702 * 114.00525 * 299.99999 * 5 3 2 36 36 H 1.08997 * 109.46839 * 300.20368 * 6 3 2 37 37 H 1.08997 * 109.46933 * 180.20059 * 6 3 2 38 38 H 1.09007 * 109.46653 * 269.99855 * 10 9 7 39 39 H 1.08997 * 109.47267 * 29.99225 * 10 9 7 40 40 H 1.08991 * 109.47462 * 149.99785 * 10 9 7 41 41 H 1.09002 * 109.47076 * 150.00304 * 11 9 7 42 42 H 1.08999 * 109.46784 * 30.00301 * 11 9 7 43 43 H 1.08996 * 113.73499 * 336.31909 * 14 12 11 44 44 H 1.08999 * 113.73533 * 107.49970 * 14 12 11 45 45 H 1.08991 * 113.76370 * 138.03650 * 15 14 12 46 46 H 1.09000 * 113.75849 * 269.29687 * 15 14 12 47 47 H 1.08995 * 109.47226 * 29.36012 * 17 16 15 48 48 H 1.09004 * 109.47197 * 149.36609 * 17 16 15 49 49 H 0.97000 * 120.00272 * 0.02562 * 20 18 17 50 50 H 0.96991 * 120.00224 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9432 1.3861 -1.2492 7 6 2.0763 1.3114 -2.4797 8 8 0.8879 1.0946 -2.3720 9 7 2.6217 1.4854 -3.6998 10 6 4.0574 1.7466 -3.8300 11 6 1.7791 1.4122 -4.8960 12 6 1.7367 -0.0309 -5.4025 13 1 2.6690 -0.3443 -5.8721 14 6 0.4828 -0.3601 -6.2327 15 6 0.4463 -1.6946 -5.4661 16 7 1.2123 -0.9955 -4.4107 17 6 2.2872 -1.8492 -3.8873 18 6 1.7721 -2.6431 -2.7145 19 8 0.6226 -2.5112 -2.3507 20 7 2.5889 -3.4997 -2.0699 21 6 2.1202 -4.2224 -1.0032 22 1 1.0967 -4.1049 -0.6793 23 6 2.9621 -5.1060 -0.3389 24 7 4.2077 -5.2485 -0.7327 25 14 2.3236 -6.0900 1.1148 26 1 1.7617 -7.3772 0.6327 27 1 3.4385 -6.3591 2.0583 28 1 1.2633 -5.3161 1.8092 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 3.4205 2.3651 1.2946 33 1 2.3277 1.2405 2.1370 34 1 3.7079 0.6107 1.2061 35 1 0.5439 2.4031 -0.7659 36 1 3.6490 0.5555 -1.2511 37 1 3.4909 2.3284 -1.2474 38 1 4.2354 2.8216 -3.7978 39 1 4.5900 1.2654 -3.0098 40 1 4.4147 1.3474 -4.7791 41 1 2.1922 2.0574 -5.6715 42 1 0.7694 1.7408 -4.6498 43 1 -0.3661 0.2902 -6.0219 44 1 0.6792 -0.4701 -7.2992 45 1 -0.5542 -1.9958 -5.1561 46 1 0.9997 -2.4968 -5.9543 47 1 2.6225 -2.5312 -4.6686 48 1 3.1220 -1.2263 -3.5659 49 1 3.5083 -3.6050 -2.3605 50 1 4.7955 -5.8650 -0.2688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233977539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:59 Heat of formation + Delta-G solvation = -73.835680 kcal Electronic energy + Delta-G solvation = -32726.431109 eV Core-core repulsion = 28562.152662 eV Total energy + Delta-G solvation = -4164.278446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.57315 -40.70553 -39.50804 -38.56659 -36.19489 -35.84618 -33.87796 -33.24793 -32.39509 -31.81445 -30.34141 -28.60720 -27.45407 -27.10210 -25.24281 -24.49524 -23.17047 -21.03163 -20.74461 -20.43827 -20.00440 -19.84727 -18.12342 -17.69915 -17.51011 -17.17679 -17.04165 -16.82943 -16.43289 -16.12457 -15.87349 -15.58023 -15.48962 -14.99753 -14.74012 -14.24143 -14.07313 -13.97796 -13.75395 -13.55215 -13.51853 -13.29022 -13.12848 -13.02360 -12.97125 -12.90059 -12.68083 -12.58650 -12.45680 -12.41079 -12.24391 -12.16367 -11.90683 -11.80352 -11.62227 -11.45072 -11.04063 -10.68295 -10.27276 -9.94438 -9.87659 -9.62176 -9.22458 -8.43997 -5.90271 1.34172 1.37435 1.49472 1.57292 1.90860 2.14355 2.17794 2.28551 2.87099 3.22355 3.30318 3.43285 3.65145 3.69001 3.82268 3.86216 3.91690 4.19515 4.23727 4.28839 4.32490 4.38359 4.39944 4.47733 4.52280 4.54955 4.56642 4.64826 4.66747 4.79914 4.84872 4.87627 4.90950 4.97709 5.01663 5.04663 5.13516 5.26887 5.30507 5.42592 5.53185 5.81027 5.81776 5.98354 6.05957 6.21358 6.56129 6.66699 6.72546 7.19358 7.49444 7.62999 8.22595 8.73853 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.005190 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.299200 B = 5394.084457 C = 7071.773768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.171 4.171 3 C 0.181 3.819 4 C -0.131 4.131 5 O -0.566 6.566 6 C -0.158 4.158 7 C 0.505 3.495 8 O -0.534 6.534 9 N -0.617 5.617 10 C 0.071 3.929 11 C 0.140 3.860 12 C 0.011 3.989 13 H 0.094 0.906 14 C -0.112 4.112 15 C -0.005 4.005 16 N -0.451 5.451 17 C 0.031 3.969 18 C 0.449 3.551 19 O -0.598 6.598 20 N -0.581 5.581 21 C -0.318 4.318 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.981 3.019 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.279 1.279 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.391 0.609 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 16.677 -10.547 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.189 4.189 3 C 0.140 3.860 4 C -0.188 4.188 5 O -0.376 6.376 6 C -0.198 4.198 7 C 0.293 3.707 8 O -0.410 6.410 9 N -0.351 5.351 10 C -0.072 4.072 11 C 0.017 3.983 12 C -0.099 4.099 13 H 0.112 0.888 14 C -0.150 4.150 15 C -0.134 4.134 16 N -0.173 5.173 17 C -0.101 4.101 18 C 0.236 3.764 19 O -0.481 6.481 20 N -0.220 5.220 21 C -0.448 4.448 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.563 5.563 25 Si 0.805 3.195 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.204 1.204 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.933 16.917 -9.015 19.568 hybrid contribution 0.252 -2.013 -0.410 2.070 sum 4.185 14.904 -9.424 18.123 Atomic orbital electron populations 1.23242 0.96317 0.99829 0.99098 1.23095 0.96573 0.97724 1.01548 1.19878 0.87903 0.83298 0.94965 1.21712 0.98541 1.03660 0.94919 1.86371 1.51291 1.48842 1.51114 1.22386 0.99291 1.05710 0.92370 1.20724 0.88654 0.76046 0.85234 1.90731 1.17300 1.46829 1.86150 1.47800 1.10026 1.71800 1.05450 1.22031 0.78749 1.02359 1.04019 1.21410 0.95983 0.94149 0.86754 1.24084 0.98318 0.95162 0.92334 0.88773 1.23183 0.97341 0.95007 0.99452 1.23891 0.99582 0.97328 0.92604 1.68486 1.15508 1.09867 1.23488 1.22249 0.95691 0.96366 0.95816 1.20684 0.86507 0.82667 0.86539 1.90531 1.19982 1.68519 1.69085 1.41895 1.13091 1.37822 1.29169 1.19456 0.97553 1.19648 1.08097 0.91288 1.25826 0.95390 0.98483 1.01236 1.69654 1.05712 1.38193 1.42745 0.85110 0.77899 0.78374 0.78092 1.19849 1.19283 1.20425 0.87864 0.92093 0.90712 0.89594 0.92555 0.90407 0.76704 0.88389 0.85761 0.90616 0.91202 0.89374 0.86644 0.91637 0.89551 0.87954 0.92491 0.91126 0.91721 0.89316 0.77549 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.34 12.60 67.79 0.85 -5.49 16 2 C -0.17 -6.95 7.47 25.65 0.19 -6.76 16 3 C 0.18 5.61 1.08 -11.54 -0.01 5.59 16 4 C -0.13 -3.43 8.83 71.98 0.64 -2.79 16 5 O -0.57 -18.00 11.92 -133.24 -1.59 -19.58 16 6 C -0.16 -4.03 3.44 29.85 0.10 -3.93 16 7 C 0.51 14.51 6.74 87.66 0.59 15.10 16 8 O -0.53 -19.76 10.97 12.72 0.14 -19.62 16 9 N -0.62 -12.85 2.85 -846.77 -2.41 -15.26 16 10 C 0.07 0.87 10.13 127.77 1.29 2.17 16 11 C 0.14 2.70 5.56 86.38 0.48 3.18 16 12 C 0.01 0.24 3.55 45.02 0.16 0.40 16 13 H 0.09 1.65 7.93 -2.39 -0.02 1.63 16 14 C -0.11 -2.27 7.84 31.24 0.25 -2.02 16 15 C 0.00 -0.15 7.95 86.41 0.69 0.54 16 16 N -0.45 -14.90 4.41 -888.31 -3.92 -18.82 16 17 C 0.03 1.11 5.28 85.56 0.45 1.56 16 18 C 0.45 22.13 7.83 87.66 0.69 22.81 16 19 O -0.60 -34.62 16.01 -3.07 -0.05 -34.67 16 20 N -0.58 -30.36 5.29 -306.98 -1.62 -31.98 16 21 C -0.32 -18.45 9.68 84.04 0.81 -17.64 16 22 H 0.07 4.38 7.16 -2.91 -0.02 4.36 16 23 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 24 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 25 Si 0.98 44.52 29.55 68.60 2.03 46.55 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 29 H 0.10 4.04 6.41 -2.91 -0.02 4.02 16 30 H 0.06 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.07 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.38 12.39 5.79 -74.06 -0.43 11.96 16 36 H 0.10 2.54 7.70 -2.39 -0.02 2.52 16 37 H 0.12 2.32 7.93 -2.39 -0.02 2.30 16 38 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.07 0.90 6.61 -2.39 -0.02 0.89 16 40 H 0.09 0.77 8.07 -2.39 -0.02 0.75 16 41 H 0.12 1.29 8.07 -2.39 -0.02 1.27 16 42 H 0.07 1.62 7.19 -2.39 -0.02 1.60 16 43 H 0.09 1.86 7.94 -2.39 -0.02 1.84 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 1.94 7.48 -2.39 -0.02 1.93 16 47 H 0.06 2.11 7.38 -2.39 -0.02 2.09 16 48 H 0.09 2.93 8.08 -2.38 -0.02 2.91 16 49 H 0.39 19.52 7.90 -92.71 -0.73 18.79 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -77.30 403.76 0.29 -77.01 By element: Atomic # 1 Polarization: 53.79 SS G_CDS: -0.22 Total: 53.57 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.65 Total: 12.64 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -7.67 Total: -115.89 kcal Atomic # 8 Polarization: -72.38 SS G_CDS: -1.50 Total: -73.87 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -77.30 0.29 -77.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233977539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.176 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds