Wall clock time and date at job start Tue Mar 31 2020 23:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46901 * 2 1 4 4 H 1.08999 * 110.35352 * 52.85618 * 3 2 1 5 5 O 1.43640 * 110.30735 * 290.70910 * 3 2 1 6 6 C 1.43239 * 109.96997 * 216.65970 * 5 3 2 7 7 C 1.54372 * 107.59053 * 1.71115 * 6 5 3 8 8 C 1.54951 * 110.30581 * 174.99786 * 3 2 1 9 9 H 1.08998 * 111.12636 * 37.40209 * 8 3 2 10 10 C 1.50698 * 111.12331 * 273.27383 * 8 3 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99538 * 180.02562 * 10 8 3 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 H 1.09004 * 112.85025 * 334.94284 * 13 12 10 15 15 C 1.53777 * 113.61716 * 106.14251 * 13 12 10 16 16 C 1.54051 * 86.98700 * 89.15735 * 15 13 12 17 17 H 1.08993 * 113.61998 * 270.88788 * 16 15 13 18 18 N 1.46908 * 113.69379 * 139.98954 * 16 15 13 19 19 C 1.46897 * 110.99714 * 107.47190 * 18 16 15 20 20 C 1.50702 * 109.47095 * 180.02562 * 19 18 16 21 21 O 1.21293 * 119.99729 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00263 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00107 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99815 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99976 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99821 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00137 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46833 * 60.00224 * 27 25 23 29 29 H 1.48494 * 109.47207 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47009 * 300.00644 * 27 25 23 31 31 C 1.53780 * 113.61505 * 203.74929 * 13 12 10 32 32 H 1.09005 * 109.47187 * 60.00663 * 1 2 3 33 33 H 1.09003 * 109.47354 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47407 * 300.00066 * 1 2 3 35 35 H 1.08999 * 109.47407 * 239.99934 * 2 1 3 36 36 H 1.08997 * 109.46927 * 119.99522 * 2 1 3 37 37 H 1.09006 * 109.83169 * 121.23025 * 6 5 3 38 38 H 1.09006 * 109.83032 * 242.10339 * 6 5 3 39 39 H 1.09001 * 110.84987 * 263.17029 * 7 6 5 40 40 H 1.09002 * 110.85352 * 139.54835 * 7 6 5 41 41 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 42 42 H 1.08998 * 113.61893 * 203.66386 * 15 13 12 43 43 H 1.09002 * 113.61386 * 334.56623 * 15 13 12 44 44 H 1.00901 * 110.99863 * 231.42632 * 18 16 15 45 45 H 1.09000 * 109.47225 * 300.00143 * 19 18 16 46 46 H 1.08997 * 109.47571 * 60.00045 * 19 18 16 47 47 H 0.97005 * 119.99693 * 359.97438 * 22 20 19 48 48 H 0.97001 * 119.99931 * 180.02562 * 26 25 23 49 49 H 1.09001 * 113.61616 * 25.43376 * 31 13 12 50 50 H 1.09000 * 113.61670 * 156.33503 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0056 0.8146 5 8 1.7569 2.0713 -1.2601 6 6 2.8320 2.9456 -1.6229 7 6 3.9114 2.8384 -0.5245 8 6 3.5840 1.4670 0.1267 9 1 4.0371 0.6480 -0.4319 10 6 4.0109 1.4361 1.5716 11 8 3.1757 1.3972 2.4501 12 7 5.3210 1.4519 1.8876 13 6 5.7360 1.4279 3.2924 14 1 4.9759 1.8254 3.9651 15 6 6.3095 0.0739 3.7424 16 6 7.6855 0.5983 3.2895 17 1 7.9097 0.3893 2.2436 18 7 8.7840 0.2305 4.1930 19 6 9.6379 -0.8017 3.5904 20 6 10.7506 -1.1529 4.5442 21 8 10.8250 -0.5976 5.6199 22 7 11.6628 -2.0841 4.2019 23 6 12.6753 -2.4032 5.0695 24 1 12.7421 -1.9081 6.0269 25 6 13.6156 -3.3636 4.7168 26 7 13.5345 -3.9656 3.5515 27 14 14.9955 -3.7979 5.8985 28 1 14.4180 -4.3102 7.1671 29 1 15.8583 -4.8420 5.2897 30 1 15.8075 -2.5864 6.1780 31 6 7.1373 2.0146 3.5310 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5137 0.8900 37 1 3.2492 2.6403 -2.5825 38 1 2.4687 3.9713 -1.6874 39 1 3.8091 3.6462 0.2001 40 1 4.9101 2.8319 -0.9613 41 1 5.9891 1.4834 1.1851 42 1 6.2387 -0.0950 4.8169 43 1 5.9477 -0.7703 3.1555 44 1 9.3253 1.0414 4.4527 45 1 9.0424 -1.6910 3.3840 46 1 10.0621 -0.4247 2.6598 47 1 11.6030 -2.5285 3.3417 48 1 14.1907 -4.6363 3.3055 49 1 7.4433 2.7362 2.7735 50 1 7.2923 2.3754 4.5478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265487597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:05 Heat of formation + Delta-G solvation = -105.941591 kcal Electronic energy + Delta-G solvation = -28964.257084 eV Core-core repulsion = 24798.586421 eV Total energy + Delta-G solvation = -4165.670663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.02370 -39.75454 -38.47781 -37.92050 -34.68955 -33.96127 -33.83580 -33.15142 -32.01144 -31.20824 -28.87972 -26.98148 -25.85866 -24.94787 -24.14869 -23.25342 -22.58509 -21.34442 -20.66805 -19.61432 -19.15525 -18.15002 -17.89829 -16.83760 -16.64594 -16.10152 -15.81967 -15.44523 -15.28672 -15.13530 -14.81576 -14.60798 -14.29072 -14.19581 -13.94201 -13.75573 -13.69756 -13.38501 -13.37673 -12.82680 -12.54296 -12.43925 -12.18882 -12.06958 -11.98927 -11.85223 -11.60247 -11.41410 -11.40930 -11.18747 -11.06640 -11.03712 -10.67547 -10.60049 -10.45870 -10.23115 -10.19979 -9.87630 -9.52243 -9.34273 -8.47633 -8.11660 -7.98419 -6.43868 -3.84798 2.20541 2.68973 3.18592 3.24404 3.28830 3.31679 3.87362 3.88287 4.08691 4.14198 4.20620 4.32330 4.33878 4.40644 4.54258 4.66912 4.69676 4.78852 4.83252 4.91754 4.96179 5.07803 5.16714 5.19569 5.23872 5.25116 5.35078 5.40268 5.51307 5.55110 5.57754 5.65945 5.70888 5.72743 5.81185 5.85534 5.87441 5.98798 6.01912 6.03831 6.22036 6.37363 6.58912 7.11028 7.22462 7.52968 7.61514 7.83744 8.03861 8.58839 9.15547 9.51798 10.03225 10.73759 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.001647 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.476437 B =16993.386804 C =17259.011995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.102 3.898 4 H 0.087 0.913 5 O -0.376 6.376 6 C 0.053 3.947 7 C -0.145 4.145 8 C -0.147 4.147 9 H 0.114 0.886 10 C 0.529 3.471 11 O -0.531 6.531 12 N -0.709 5.709 13 C 0.117 3.883 14 H 0.105 0.895 15 C -0.135 4.135 16 C 0.059 3.941 17 H 0.069 0.931 18 N -0.655 5.655 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 C -0.147 4.147 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.400 0.600 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.351 0.649 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.071 0.929 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.803 12.416 -13.390 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.044 3.956 4 H 0.105 0.895 5 O -0.296 6.296 6 C -0.024 4.024 7 C -0.183 4.183 8 C -0.169 4.169 9 H 0.132 0.868 10 C 0.315 3.685 11 O -0.407 6.407 12 N -0.360 5.360 13 C 0.012 3.988 14 H 0.123 0.877 15 C -0.174 4.174 16 C -0.051 4.051 17 H 0.086 0.914 18 N -0.288 5.288 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 C -0.186 4.186 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.235 0.765 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.171 0.829 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.772 12.127 -11.866 27.602 hybrid contribution 1.937 -0.097 -1.003 2.183 sum -19.835 12.030 -12.869 26.528 Atomic orbital electron populations 1.21690 0.94971 1.01637 1.02221 1.21655 0.97234 0.94251 1.02685 1.22872 0.91003 0.95006 0.86716 0.89538 1.88442 1.42403 1.60511 1.38253 1.23086 0.87009 0.94814 0.97465 1.23114 1.00804 0.95873 0.98507 1.23098 0.99060 1.00398 0.94309 0.86815 1.20102 0.82456 0.75684 0.90280 1.90732 1.51292 1.48848 1.49840 1.45713 1.07062 1.74949 1.08242 1.21797 0.96402 0.98268 0.82376 0.87721 1.23587 0.94680 0.96230 1.02945 1.23152 0.92164 0.94802 0.95018 0.91370 1.60203 1.13216 1.14610 1.40737 1.21731 0.94522 0.96542 0.95462 1.19818 0.84703 0.84185 0.88782 1.90523 1.76352 1.55480 1.24422 1.41862 1.24380 1.35010 1.18735 1.19661 1.03296 1.19889 1.00161 0.87958 1.25268 0.99170 0.96484 0.97010 1.69603 1.37150 1.26925 1.20660 0.85908 0.80192 0.78183 0.79881 1.19858 1.20972 1.19918 1.23600 0.94665 0.96685 1.03617 0.92188 0.92691 0.92621 0.91355 0.90373 0.90920 0.91061 0.89885 0.89090 0.76516 0.88054 0.91525 0.82868 0.89691 0.93958 0.77482 0.91810 0.91080 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.85 37.16 0.37 -0.80 16 2 C -0.12 -0.99 5.66 -26.73 -0.15 -1.14 16 3 C 0.10 0.87 2.55 -25.70 -0.07 0.81 16 4 H 0.09 0.88 7.38 -51.93 -0.38 0.50 16 5 O -0.38 -3.34 10.81 -35.23 -0.38 -3.72 16 6 C 0.05 0.31 7.79 37.88 0.30 0.61 16 7 C -0.15 -0.73 6.49 -24.79 -0.16 -0.90 16 8 C -0.15 -1.01 2.90 -89.52 -0.26 -1.27 16 9 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 10 C 0.53 4.86 7.15 -10.99 -0.08 4.78 16 11 O -0.53 -6.90 15.34 5.55 0.09 -6.81 16 12 N -0.71 -5.43 5.26 -53.02 -0.28 -5.71 16 13 C 0.12 1.09 4.30 -67.12 -0.29 0.80 16 14 H 0.10 1.11 7.50 -51.93 -0.39 0.72 16 15 C -0.13 -1.48 7.70 -25.78 -0.20 -1.68 16 16 C 0.06 0.65 4.03 -66.75 -0.27 0.38 16 17 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 18 N -0.66 -9.98 6.19 -106.98 -0.66 -10.64 16 19 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 20 C 0.44 10.26 7.82 -10.99 -0.09 10.17 16 21 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 22 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 23 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 24 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 27 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 31 C -0.15 -1.29 7.39 -25.92 -0.19 -1.48 16 32 H 0.06 0.48 7.99 -51.93 -0.42 0.07 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.46 8.03 -51.93 -0.42 0.04 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.40 2.13 8.70 -40.82 -0.36 1.78 16 42 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.35 5.48 8.25 -39.29 -0.32 5.16 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -33.23 410.37 -9.12 -42.35 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -8.44 Total: 12.81 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.36 Total: 3.11 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.27 Total: -54.22 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.21 Total: -26.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.23 -9.12 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265487597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.589 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds