Wall clock time and date at job start Tue Mar 31 2020 23:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46901 * 2 1 4 4 H 1.08999 * 110.35352 * 52.85618 * 3 2 1 5 5 O 1.43640 * 110.30735 * 290.70910 * 3 2 1 6 6 C 1.43239 * 109.96997 * 216.65970 * 5 3 2 7 7 C 1.54372 * 107.59053 * 1.71115 * 6 5 3 8 8 C 1.54951 * 110.30581 * 174.99786 * 3 2 1 9 9 H 1.08998 * 111.12636 * 37.40209 * 8 3 2 10 10 C 1.50698 * 111.12331 * 273.27383 * 8 3 2 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99538 * 180.02562 * 10 8 3 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 H 1.09004 * 112.85025 * 334.94284 * 13 12 10 15 15 C 1.53777 * 113.61716 * 106.14251 * 13 12 10 16 16 C 1.54051 * 86.98700 * 89.15735 * 15 13 12 17 17 H 1.08993 * 113.61998 * 270.88788 * 16 15 13 18 18 N 1.46908 * 113.69379 * 139.98954 * 16 15 13 19 19 C 1.46897 * 110.99714 * 107.47190 * 18 16 15 20 20 C 1.50702 * 109.47095 * 180.02562 * 19 18 16 21 21 O 1.21293 * 119.99729 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00263 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00107 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99815 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99976 * 179.97438 * 23 22 20 26 26 N 1.31411 * 119.99821 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00137 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46833 * 60.00224 * 27 25 23 29 29 H 1.48494 * 109.47207 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47009 * 300.00644 * 27 25 23 31 31 C 1.53780 * 113.61505 * 203.74929 * 13 12 10 32 32 H 1.09005 * 109.47187 * 60.00663 * 1 2 3 33 33 H 1.09003 * 109.47354 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47407 * 300.00066 * 1 2 3 35 35 H 1.08999 * 109.47407 * 239.99934 * 2 1 3 36 36 H 1.08997 * 109.46927 * 119.99522 * 2 1 3 37 37 H 1.09006 * 109.83169 * 121.23025 * 6 5 3 38 38 H 1.09006 * 109.83032 * 242.10339 * 6 5 3 39 39 H 1.09001 * 110.84987 * 263.17029 * 7 6 5 40 40 H 1.09002 * 110.85352 * 139.54835 * 7 6 5 41 41 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 42 42 H 1.08998 * 113.61893 * 203.66386 * 15 13 12 43 43 H 1.09002 * 113.61386 * 334.56623 * 15 13 12 44 44 H 1.00901 * 110.99863 * 231.42632 * 18 16 15 45 45 H 1.09000 * 109.47225 * 300.00143 * 19 18 16 46 46 H 1.08997 * 109.47571 * 60.00045 * 19 18 16 47 47 H 0.97005 * 119.99693 * 359.97438 * 22 20 19 48 48 H 0.97001 * 119.99931 * 180.02562 * 26 25 23 49 49 H 1.09001 * 113.61616 * 25.43376 * 31 13 12 50 50 H 1.09000 * 113.61670 * 156.33503 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5845 2.0056 0.8146 5 8 1.7569 2.0713 -1.2601 6 6 2.8320 2.9456 -1.6229 7 6 3.9114 2.8384 -0.5245 8 6 3.5840 1.4670 0.1267 9 1 4.0371 0.6480 -0.4319 10 6 4.0109 1.4361 1.5716 11 8 3.1757 1.3972 2.4501 12 7 5.3210 1.4519 1.8876 13 6 5.7360 1.4279 3.2924 14 1 4.9759 1.8254 3.9651 15 6 6.3095 0.0739 3.7424 16 6 7.6855 0.5983 3.2895 17 1 7.9097 0.3893 2.2436 18 7 8.7840 0.2305 4.1930 19 6 9.6379 -0.8017 3.5904 20 6 10.7506 -1.1529 4.5442 21 8 10.8250 -0.5976 5.6199 22 7 11.6628 -2.0841 4.2019 23 6 12.6753 -2.4032 5.0695 24 1 12.7421 -1.9081 6.0269 25 6 13.6156 -3.3636 4.7168 26 7 13.5345 -3.9656 3.5515 27 14 14.9955 -3.7979 5.8985 28 1 14.4180 -4.3102 7.1671 29 1 15.8583 -4.8420 5.2897 30 1 15.8075 -2.5864 6.1780 31 6 7.1373 2.0146 3.5310 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5137 0.8900 37 1 3.2492 2.6403 -2.5825 38 1 2.4687 3.9713 -1.6874 39 1 3.8091 3.6462 0.2001 40 1 4.9101 2.8319 -0.9613 41 1 5.9891 1.4834 1.1851 42 1 6.2387 -0.0950 4.8169 43 1 5.9477 -0.7703 3.1555 44 1 9.3253 1.0414 4.4527 45 1 9.0424 -1.6910 3.3840 46 1 10.0621 -0.4247 2.6598 47 1 11.6030 -2.5285 3.3417 48 1 14.1907 -4.6363 3.3055 49 1 7.4433 2.7362 2.7735 50 1 7.2923 2.3754 4.5478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265487597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:04 Heat of formation + Delta-G solvation = -131.533183 kcal Electronic energy + Delta-G solvation = -28965.366819 eV Core-core repulsion = 24798.586421 eV Total energy + Delta-G solvation = -4166.780398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.71548 -40.56813 -39.97745 -38.99068 -36.13930 -35.44359 -34.52407 -34.00998 -33.25664 -32.71106 -29.43549 -28.47668 -26.69875 -26.27661 -25.23727 -23.99493 -23.36233 -21.94446 -21.36640 -21.09290 -20.31017 -19.88763 -18.77694 -17.91135 -17.38283 -17.20625 -16.85752 -16.55291 -16.33218 -16.14677 -15.98534 -15.79765 -15.55415 -15.25219 -14.89060 -14.87105 -14.47826 -14.33583 -14.12573 -13.96751 -13.51783 -13.45570 -13.28286 -13.25951 -13.02620 -12.88026 -12.71329 -12.57673 -12.43354 -12.40206 -12.12464 -11.92360 -11.78941 -11.65223 -11.52572 -11.48926 -11.46851 -10.95072 -10.46786 -10.33490 -10.08798 -10.01757 -9.29715 -8.46812 -5.95551 1.39826 1.41946 1.50379 1.52698 2.01574 2.05551 2.29286 2.77166 2.96868 3.20634 3.37328 3.48567 3.55331 3.57813 3.65212 3.68988 3.97100 4.06632 4.13597 4.15170 4.19777 4.22145 4.30591 4.41317 4.47728 4.51029 4.58100 4.59820 4.78668 4.80564 4.84930 4.86160 4.87502 4.96306 5.01350 5.05937 5.07578 5.09101 5.14367 5.24716 5.37099 5.40650 5.55202 5.93489 6.04130 6.17181 6.44637 6.48916 6.60215 7.12501 7.18156 7.56374 8.11778 8.70236 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.001647 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.476437 B =16993.386804 C =17259.011995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.100 3.900 4 H 0.062 0.938 5 O -0.395 6.395 6 C 0.044 3.956 7 C -0.136 4.136 8 C -0.140 4.140 9 H 0.135 0.865 10 C 0.529 3.471 11 O -0.575 6.575 12 N -0.695 5.695 13 C 0.126 3.874 14 H 0.089 0.911 15 C -0.139 4.139 16 C 0.060 3.940 17 H 0.092 0.908 18 N -0.673 5.673 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.271 1.271 31 C -0.132 4.132 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.416 0.584 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.347 0.653 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 12.786 -15.448 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.042 3.958 4 H 0.080 0.920 5 O -0.315 6.315 6 C -0.032 4.032 7 C -0.174 4.174 8 C -0.161 4.161 9 H 0.153 0.847 10 C 0.316 3.684 11 O -0.454 6.454 12 N -0.346 5.346 13 C 0.020 3.980 14 H 0.107 0.893 15 C -0.179 4.179 16 C -0.050 4.050 17 H 0.109 0.891 18 N -0.305 5.305 19 C -0.066 4.066 20 C 0.223 3.777 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.816 3.184 28 H -0.199 1.199 29 H -0.195 1.195 30 H -0.196 1.196 31 C -0.170 4.170 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.139 0.861 41 H 0.254 0.746 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.167 0.833 45 H 0.116 0.884 46 H 0.089 0.911 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.114 0.886 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.028 12.501 -13.977 28.175 hybrid contribution 1.625 -0.177 -0.362 1.674 sum -19.403 12.324 -14.339 27.092 Atomic orbital electron populations 1.21677 0.95028 1.02055 1.01641 1.21640 0.97286 0.94227 1.02604 1.22756 0.92275 0.94664 0.86099 0.92048 1.88422 1.43954 1.61112 1.38030 1.23312 0.86671 0.94729 0.98447 1.23134 1.02093 0.94265 0.97928 1.23068 0.97784 1.02377 0.92878 0.84728 1.20509 0.82367 0.74652 0.90881 1.90723 1.52532 1.50892 1.51275 1.45564 1.07044 1.74045 1.07953 1.21573 0.96304 0.97087 0.83070 0.89276 1.23564 0.95373 0.97118 1.01855 1.23287 0.90172 0.96177 0.95318 0.89075 1.60165 1.13553 1.14339 1.42488 1.21580 0.92687 0.97865 0.94508 1.20955 0.85099 0.82504 0.89096 1.90491 1.77445 1.56540 1.26616 1.41935 1.24608 1.35832 1.18660 1.19633 1.05325 1.21292 1.00275 0.90360 1.26033 1.00849 0.95781 0.98584 1.69660 1.37845 1.26969 1.21563 0.84995 0.77409 0.78157 0.77821 1.19878 1.19466 1.19615 1.23495 0.93379 0.95978 1.04165 0.92457 0.91769 0.93469 0.90327 0.91339 0.89211 0.90578 0.90512 0.86059 0.74618 0.89998 0.91743 0.83252 0.88380 0.91098 0.76955 0.91282 0.88550 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.85 71.98 0.71 -1.61 16 2 C -0.12 -1.93 5.66 30.59 0.17 -1.76 16 3 C 0.10 1.67 2.55 31.26 0.08 1.75 16 4 H 0.06 1.32 7.38 -2.39 -0.02 1.30 16 5 O -0.40 -6.61 10.81 -148.98 -1.61 -8.22 16 6 C 0.04 0.43 7.79 72.45 0.56 0.99 16 7 C -0.14 -1.00 6.49 31.85 0.21 -0.79 16 8 C -0.14 -1.64 2.90 -10.08 -0.03 -1.67 16 9 H 0.13 1.05 8.06 -2.39 -0.02 1.03 16 10 C 0.53 9.04 7.15 87.66 0.63 9.67 16 11 O -0.58 -15.11 15.34 -3.04 -0.05 -15.16 16 12 N -0.69 -8.98 5.26 -440.04 -2.32 -11.29 16 13 C 0.13 2.16 4.30 45.52 0.20 2.35 16 14 H 0.09 1.87 7.50 -2.39 -0.02 1.86 16 15 C -0.14 -2.92 7.70 31.21 0.24 -2.68 16 16 C 0.06 1.17 4.03 45.53 0.18 1.35 16 17 H 0.09 1.42 7.86 -2.39 -0.02 1.40 16 18 N -0.67 -19.51 6.19 -492.37 -3.05 -22.56 16 19 C 0.07 2.14 6.01 85.56 0.51 2.65 16 20 C 0.44 20.34 7.82 87.66 0.69 21.03 16 21 O -0.62 -34.24 15.78 -3.07 -0.05 -34.29 16 22 N -0.57 -29.02 5.29 -306.99 -1.62 -30.64 16 23 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 26 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 27 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 30 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 31 C -0.13 -2.00 7.39 31.12 0.23 -1.77 16 32 H 0.06 0.93 7.99 -2.38 -0.02 0.91 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.08 0.69 8.03 -2.39 -0.02 0.67 16 40 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.42 2.81 8.70 -92.71 -0.81 2.00 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.35 10.47 8.25 -89.69 -0.74 9.73 16 45 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 46 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 47 H 0.40 18.96 7.90 -92.70 -0.73 18.22 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -73.97 410.37 -2.03 -76.01 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -1.31 Total: 39.15 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.66 Total: 11.17 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -6.70 Total: -113.28 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.71 Total: -57.66 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.97 -2.03 -76.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265487597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.525 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds