Wall clock time and date at job start Tue Mar 31 2020 23:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46862 * 2 1 4 4 C 1.53000 * 109.46899 * 240.00519 * 2 1 3 5 5 C 1.50696 * 109.47623 * 59.99595 * 4 2 1 6 6 O 1.21290 * 119.99580 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00642 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00228 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.91047 * 37.41112 * 8 7 5 10 10 C 1.55135 * 110.98923 * 273.54213 * 8 7 5 11 11 C 1.54322 * 103.02006 * 206.25812 * 10 8 7 12 12 N 1.47439 * 107.23490 * 22.28319 * 11 10 8 13 13 C 1.46901 * 110.99961 * 123.25626 * 12 11 10 14 14 C 1.50701 * 109.46921 * 69.87543 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47457 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47104 * 239.99973 * 21 19 17 25 25 C 1.47853 * 108.56569 * 0.99003 * 12 11 10 26 26 C 1.52998 * 109.46966 * 120.00346 * 2 1 3 27 27 C 1.52998 * 117.50331 * 13.62219 * 26 2 1 28 28 C 1.53000 * 117.49783 * 304.99675 * 26 2 1 29 29 H 1.09001 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47173 * 299.99489 * 1 2 3 31 31 H 1.09002 * 109.47222 * 59.99817 * 1 2 3 32 32 H 0.96701 * 114.00152 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47162 * 299.99698 * 4 2 1 34 34 H 1.08994 * 109.47010 * 180.02562 * 4 2 1 35 35 H 0.97002 * 119.99602 * 0.02562 * 7 5 4 36 36 H 1.09003 * 110.71015 * 87.87409 * 10 8 7 37 37 H 1.09004 * 110.70681 * 324.63724 * 10 8 7 38 38 H 1.09003 * 109.88473 * 262.87599 * 11 10 8 39 39 H 1.08997 * 109.88802 * 141.69469 * 11 10 8 40 40 H 1.09002 * 109.47401 * 309.87571 * 13 12 11 41 41 H 1.09001 * 109.46874 * 189.87583 * 13 12 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.36766 * 94.73414 * 25 12 11 45 45 H 1.08997 * 110.37443 * 217.07382 * 25 12 11 46 46 H 1.09001 * 115.54268 * 159.32970 * 26 2 1 47 47 H 1.09003 * 117.49354 * 359.97438 * 27 26 2 48 48 H 1.08996 * 117.50113 * 145.01717 * 27 26 2 49 49 H 1.09002 * 117.49358 * 214.97942 * 28 26 2 50 50 H 1.08994 * 117.49958 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 8 0.8407 0.9756 -2.3684 7 7 1.8627 -0.4714 -3.7039 8 6 1.3748 0.2195 -4.9000 9 1 1.3697 1.2992 -4.7507 10 6 -0.0334 -0.2925 -5.3019 11 6 -0.0815 -0.0218 -6.8204 12 7 1.3124 0.0639 -7.2932 13 6 1.5662 -0.9100 -8.3632 14 6 0.8261 -0.4929 -9.6079 15 8 0.1537 0.5166 -9.6041 16 7 0.9121 -1.2411 -10.7257 17 6 0.2392 -0.8614 -11.8582 18 1 -0.3602 0.0371 -11.8545 19 6 0.3274 -1.6329 -13.0103 20 7 1.0562 -2.7264 -13.0147 21 14 -0.5889 -1.1152 -14.5536 22 1 -1.3313 0.1434 -14.2897 23 1 0.3819 -0.8960 -15.6557 24 1 -1.5462 -2.1819 -14.9422 25 6 2.2142 -0.1646 -6.1439 26 6 2.0400 -0.7213 1.2492 27 6 1.0320 -1.5510 2.0469 28 6 1.5416 -0.2213 2.6066 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.9703 1.4237 0.0004 33 1 1.6767 -1.7488 -1.2494 34 1 3.1299 -0.7216 -1.2491 35 1 2.4198 -1.2605 -3.7929 36 1 -0.8104 0.2710 -4.7852 37 1 -0.1287 -1.3589 -5.0973 38 1 -0.5970 0.9190 -7.0132 39 1 -0.5952 -0.8391 -7.3266 40 1 1.2209 -1.8946 -8.0479 41 1 2.6353 -0.9497 -8.5723 42 1 1.4501 -2.0482 -10.7288 43 1 1.1181 -3.2649 -13.8191 44 1 2.5077 -1.2132 -6.0947 45 1 3.0945 0.4736 -6.2196 46 1 3.0642 -1.0902 1.1937 47 1 0.0054 -1.5826 1.6820 48 1 1.3929 -2.4661 2.5164 49 1 2.2378 -0.2617 3.4443 50 1 0.8501 0.6212 2.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266315328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:58 Heat of formation + Delta-G solvation = -83.553936 kcal Electronic energy + Delta-G solvation = -29396.935704 eV Core-core repulsion = 25232.235842 eV Total energy + Delta-G solvation = -4164.699862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62793 -39.45255 -38.53479 -37.43771 -35.76660 -34.49051 -33.79705 -32.14009 -31.31933 -30.78683 -28.91828 -27.94059 -26.37397 -24.51157 -24.05952 -22.79880 -21.40290 -21.13755 -20.47229 -19.97492 -19.06536 -17.85339 -17.71207 -16.88223 -16.60219 -16.03031 -15.94410 -15.79279 -15.55141 -14.78096 -14.50334 -14.47864 -14.31465 -13.91429 -13.71962 -13.42500 -13.36658 -13.17756 -13.07638 -12.71631 -12.44362 -12.15678 -12.07915 -11.87145 -11.65873 -11.50278 -11.45168 -11.40292 -11.22474 -11.21735 -11.02447 -10.93867 -10.61781 -10.60287 -10.33360 -10.32785 -10.21333 -9.72445 -9.49890 -9.17764 -8.45491 -7.96044 -7.91286 -6.40725 -3.81278 2.47525 2.83283 3.17164 3.26907 3.27735 3.35262 3.91871 3.98719 4.09115 4.11951 4.22918 4.31233 4.47717 4.51751 4.54519 4.64303 4.70536 4.83366 4.88535 5.05554 5.08994 5.16122 5.20912 5.26230 5.29805 5.34137 5.42341 5.45439 5.55227 5.60733 5.63498 5.72548 5.72937 5.78569 5.80601 5.93131 5.98269 6.08729 6.17627 6.29349 6.36917 6.49009 7.19158 7.20762 7.31489 7.43671 7.56636 8.07879 8.09371 8.63402 9.19876 9.55940 10.08110 10.77239 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.040083 B = 0.001650 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.387774 B =16969.590364 C =17080.060593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 O -0.537 6.537 4 C -0.167 4.167 5 C 0.513 3.487 6 O -0.513 6.513 7 N -0.726 5.726 8 C 0.138 3.862 9 H 0.104 0.896 10 C -0.153 4.153 11 C 0.058 3.942 12 N -0.502 5.502 13 C 0.041 3.959 14 C 0.444 3.556 15 O -0.574 6.574 16 N -0.567 5.567 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.038 3.962 26 C -0.191 4.191 27 C -0.178 4.178 28 C -0.164 4.164 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.368 0.632 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.398 0.602 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -2.699 28.877 29.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 O -0.341 6.341 4 C -0.208 4.208 5 C 0.299 3.701 6 O -0.387 6.387 7 N -0.378 5.378 8 C 0.033 3.967 9 H 0.122 0.878 10 C -0.193 4.193 11 C -0.070 4.070 12 N -0.226 5.226 13 C -0.090 4.090 14 C 0.229 3.771 15 O -0.458 6.458 16 N -0.204 5.204 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.091 4.091 26 C -0.210 4.210 27 C -0.215 4.215 28 C -0.201 4.201 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.214 0.786 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.232 0.768 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.406 -0.786 28.577 28.925 hybrid contribution 0.892 -1.994 -0.633 2.274 sum 5.298 -2.780 27.944 28.577 Atomic orbital electron populations 1.22113 0.92350 1.01939 1.04881 1.20257 0.95143 0.81583 0.88945 1.86733 1.25715 1.24936 1.96709 1.22424 1.02760 1.01650 0.93937 1.20425 0.80655 0.84820 0.84210 1.90713 1.36481 1.25406 1.86132 1.45999 1.54228 1.31993 1.05559 1.22080 0.93165 0.98306 0.83192 0.87807 1.23236 0.97648 1.01133 0.97285 1.22704 0.89908 1.02872 0.91498 1.63232 1.03460 1.49017 1.06896 1.22092 1.01189 0.93220 0.92532 1.19727 0.86427 0.86352 0.84583 1.90531 1.44313 1.26691 1.84233 1.41864 1.44506 1.24243 1.09802 1.19752 1.25521 1.09455 0.87908 0.87868 1.25247 0.97651 0.95641 0.99468 1.69622 1.40121 1.14899 1.29866 0.85804 0.78993 0.78701 0.80881 1.19217 1.20769 1.20826 1.23253 0.96804 0.99862 0.89133 1.23057 0.99456 1.04929 0.93516 1.23134 0.99602 0.95180 1.03575 1.22871 1.03703 0.97980 0.95555 0.91701 0.92168 0.88828 0.78574 0.88082 0.88763 0.76847 0.90329 0.91601 0.89599 0.92409 0.93302 0.89380 0.77574 0.91993 0.93365 0.89601 0.87764 0.87864 0.88830 0.88891 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 7.18 37.16 0.27 -1.14 16 2 C 0.18 1.39 0.80 -90.62 -0.07 1.31 16 3 O -0.54 -5.11 11.85 -53.50 -0.63 -5.75 16 4 C -0.17 -1.05 4.95 -27.88 -0.14 -1.19 16 5 C 0.51 5.05 7.39 -10.99 -0.08 4.97 16 6 O -0.51 -7.20 12.70 -12.72 -0.16 -7.36 16 7 N -0.73 -6.31 5.23 -51.74 -0.27 -6.58 16 8 C 0.14 1.59 3.31 -65.80 -0.22 1.37 16 9 H 0.10 1.42 7.73 -51.93 -0.40 1.02 16 10 C -0.15 -1.94 6.64 -24.91 -0.17 -2.10 16 11 C 0.06 0.93 5.65 -2.84 -0.02 0.92 16 12 N -0.50 -8.24 4.85 -232.68 -1.13 -9.37 16 13 C 0.04 0.72 5.03 -4.97 -0.03 0.70 16 14 C 0.44 10.48 7.43 -10.98 -0.08 10.40 16 15 O -0.57 -15.64 15.12 5.55 0.08 -15.56 16 16 N -0.57 -14.34 5.29 -10.96 -0.06 -14.39 16 17 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.04 0.45 6.31 -2.29 -0.01 0.44 16 26 C -0.19 -1.11 5.32 -90.62 -0.48 -1.59 16 27 C -0.18 -0.97 9.65 -26.73 -0.26 -1.23 16 28 C -0.16 -0.99 9.85 -26.73 -0.26 -1.25 16 29 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 30 H 0.06 0.54 6.96 -51.93 -0.36 0.18 16 31 H 0.09 1.13 5.51 -51.93 -0.29 0.84 16 32 H 0.37 2.18 9.05 45.56 0.41 2.59 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.40 2.33 8.52 -40.82 -0.35 1.99 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 40 H 0.05 0.77 7.96 -51.93 -0.41 0.36 16 41 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 42 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.05 0.48 7.67 -51.93 -0.40 0.09 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.58 5.89 -51.93 -0.31 0.27 16 48 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.70 7.29 -51.93 -0.38 0.32 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -34.64 398.98 -9.51 -44.15 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.27 Total: 12.93 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.79 Total: 3.64 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.73 Total: -54.15 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.71 Total: -28.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.64 -9.51 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.403 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds