Wall clock time and date at job start Tue Mar 31 2020 23:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46862 * 2 1 4 4 C 1.53000 * 109.46899 * 240.00519 * 2 1 3 5 5 C 1.50696 * 109.47623 * 59.99595 * 4 2 1 6 6 O 1.21290 * 119.99580 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00642 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00228 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.91047 * 37.41112 * 8 7 5 10 10 C 1.55135 * 110.98923 * 273.54213 * 8 7 5 11 11 C 1.54322 * 103.02006 * 206.25812 * 10 8 7 12 12 N 1.47439 * 107.23490 * 22.28319 * 11 10 8 13 13 C 1.46901 * 110.99961 * 123.25626 * 12 11 10 14 14 C 1.50701 * 109.46921 * 69.87543 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47457 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47104 * 239.99973 * 21 19 17 25 25 C 1.47853 * 108.56569 * 0.99003 * 12 11 10 26 26 C 1.52998 * 109.46966 * 120.00346 * 2 1 3 27 27 C 1.52998 * 117.50331 * 13.62219 * 26 2 1 28 28 C 1.53000 * 117.49783 * 304.99675 * 26 2 1 29 29 H 1.09001 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47173 * 299.99489 * 1 2 3 31 31 H 1.09002 * 109.47222 * 59.99817 * 1 2 3 32 32 H 0.96701 * 114.00152 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47162 * 299.99698 * 4 2 1 34 34 H 1.08994 * 109.47010 * 180.02562 * 4 2 1 35 35 H 0.97002 * 119.99602 * 0.02562 * 7 5 4 36 36 H 1.09003 * 110.71015 * 87.87409 * 10 8 7 37 37 H 1.09004 * 110.70681 * 324.63724 * 10 8 7 38 38 H 1.09003 * 109.88473 * 262.87599 * 11 10 8 39 39 H 1.08997 * 109.88802 * 141.69469 * 11 10 8 40 40 H 1.09002 * 109.47401 * 309.87571 * 13 12 11 41 41 H 1.09001 * 109.46874 * 189.87583 * 13 12 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 43 43 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.36766 * 94.73414 * 25 12 11 45 45 H 1.08997 * 110.37443 * 217.07382 * 25 12 11 46 46 H 1.09001 * 115.54268 * 159.32970 * 26 2 1 47 47 H 1.09003 * 117.49354 * 359.97438 * 27 26 2 48 48 H 1.08996 * 117.50113 * 145.01717 * 27 26 2 49 49 H 1.09002 * 117.49358 * 214.97942 * 28 26 2 50 50 H 1.08994 * 117.49958 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 8 0.8407 0.9756 -2.3684 7 7 1.8627 -0.4714 -3.7039 8 6 1.3748 0.2195 -4.9000 9 1 1.3697 1.2992 -4.7507 10 6 -0.0334 -0.2925 -5.3019 11 6 -0.0815 -0.0218 -6.8204 12 7 1.3124 0.0639 -7.2932 13 6 1.5662 -0.9100 -8.3632 14 6 0.8261 -0.4929 -9.6079 15 8 0.1537 0.5166 -9.6041 16 7 0.9121 -1.2411 -10.7257 17 6 0.2392 -0.8614 -11.8582 18 1 -0.3602 0.0371 -11.8545 19 6 0.3274 -1.6329 -13.0103 20 7 1.0562 -2.7264 -13.0147 21 14 -0.5889 -1.1152 -14.5536 22 1 -1.3313 0.1434 -14.2897 23 1 0.3819 -0.8960 -15.6557 24 1 -1.5462 -2.1819 -14.9422 25 6 2.2142 -0.1646 -6.1439 26 6 2.0400 -0.7213 1.2492 27 6 1.0320 -1.5510 2.0469 28 6 1.5416 -0.2213 2.6066 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.9703 1.4237 0.0004 33 1 1.6767 -1.7488 -1.2494 34 1 3.1299 -0.7216 -1.2491 35 1 2.4198 -1.2605 -3.7929 36 1 -0.8104 0.2710 -4.7852 37 1 -0.1287 -1.3589 -5.0973 38 1 -0.5970 0.9190 -7.0132 39 1 -0.5952 -0.8391 -7.3266 40 1 1.2209 -1.8946 -8.0479 41 1 2.6353 -0.9497 -8.5723 42 1 1.4501 -2.0482 -10.7288 43 1 1.1181 -3.2649 -13.8191 44 1 2.5077 -1.2132 -6.0947 45 1 3.0945 0.4736 -6.2196 46 1 3.0642 -1.0902 1.1937 47 1 0.0054 -1.5826 1.6820 48 1 1.3929 -2.4661 2.5164 49 1 2.2378 -0.2617 3.4443 50 1 0.8501 0.6212 2.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266315328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:57 Heat of formation + Delta-G solvation = -111.485435 kcal Electronic energy + Delta-G solvation = -29398.146905 eV Core-core repulsion = 25232.235842 eV Total energy + Delta-G solvation = -4165.911062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39558 -40.60047 -39.65015 -38.77590 -36.34322 -35.98391 -35.30111 -33.30345 -32.82223 -31.96293 -29.88378 -28.87665 -27.79075 -25.99532 -24.92662 -23.22410 -22.48828 -22.16461 -21.45167 -20.78328 -20.52898 -19.83926 -18.38241 -17.77506 -17.66574 -17.29928 -16.89981 -16.56987 -16.48080 -16.42376 -15.84693 -15.65043 -15.36502 -15.07243 -14.90541 -14.68280 -14.43030 -14.14429 -13.91000 -13.76413 -13.56338 -13.35576 -13.26564 -13.05648 -12.86837 -12.72112 -12.53274 -12.41686 -12.40507 -12.33472 -12.11698 -12.04768 -11.78173 -11.77824 -11.49565 -11.38922 -11.06965 -10.92083 -10.47009 -10.32161 -10.02684 -9.99159 -9.23630 -8.46094 -5.94279 1.36510 1.41799 1.55725 1.74972 2.05987 2.07639 2.30509 2.80512 2.90887 3.20835 3.32907 3.51931 3.55868 3.61810 3.71566 3.76905 4.01545 4.03253 4.08128 4.19201 4.24161 4.28387 4.33155 4.37477 4.41773 4.45177 4.53239 4.64069 4.65091 4.79251 4.83577 4.85457 4.93293 4.96313 5.01779 5.04208 5.06188 5.17430 5.29523 5.30362 5.41500 5.42106 5.59069 5.85817 6.00070 6.11345 6.62328 6.64699 6.99060 7.14732 7.40358 7.58258 8.15014 8.71514 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.040083 B = 0.001650 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.387774 B =16969.590364 C =17080.060593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.178 3.822 3 O -0.565 6.565 4 C -0.157 4.157 5 C 0.509 3.491 6 O -0.561 6.561 7 N -0.710 5.710 8 C 0.148 3.852 9 H 0.077 0.923 10 C -0.140 4.140 11 C 0.062 3.938 12 N -0.529 5.529 13 C 0.056 3.944 14 C 0.439 3.561 15 O -0.618 6.618 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.045 3.955 26 C -0.183 4.183 27 C -0.174 4.174 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.382 0.618 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.417 0.583 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 -5.209 29.992 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 O -0.372 6.372 4 C -0.197 4.197 5 C 0.297 3.703 6 O -0.439 6.439 7 N -0.364 5.364 8 C 0.042 3.958 9 H 0.095 0.905 10 C -0.179 4.179 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.075 4.075 14 C 0.226 3.774 15 O -0.504 6.504 16 N -0.213 5.213 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.211 4.211 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.201 1.201 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.082 4.082 26 C -0.201 4.201 27 C -0.211 4.211 28 C -0.213 4.213 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.133 0.867 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.144 0.856 47 H 0.116 0.884 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.581 -3.351 29.710 30.614 hybrid contribution 0.204 -1.152 -0.935 1.497 sum 6.785 -4.503 28.776 29.906 Atomic orbital electron populations 1.22091 0.94127 1.02352 1.02698 1.20316 0.93983 0.81317 0.90660 1.86704 1.27142 1.26425 1.96898 1.22430 1.04590 1.01856 0.90834 1.21134 0.79690 0.84265 0.85255 1.90721 1.38625 1.27731 1.86787 1.45805 1.54017 1.32253 1.04308 1.21714 0.92517 0.97181 0.84418 0.90451 1.23093 0.98278 1.02110 0.94456 1.22521 0.89841 1.00516 0.93787 1.63095 1.04100 1.49546 1.08620 1.21945 1.01570 0.94228 0.89792 1.20876 0.85510 0.85177 0.85816 1.90505 1.46097 1.28575 1.85218 1.41916 1.44731 1.24746 1.09892 1.19669 1.27072 1.09557 0.89868 0.90606 1.25984 0.98049 0.95425 1.01691 1.69670 1.40318 1.15194 1.30903 0.84898 0.78052 0.78140 0.77401 1.20073 1.19551 1.19580 1.23279 0.95845 1.02106 0.87015 1.23011 1.00458 1.04499 0.92126 1.23192 0.99395 0.95336 1.03142 1.22877 1.04010 0.97946 0.96439 0.89996 0.93151 0.92122 0.77030 0.85635 0.85530 0.74575 0.91471 0.89655 0.92969 0.93976 0.90737 0.86708 0.76940 0.91331 0.90056 0.88678 0.85559 0.88370 0.87306 0.87828 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 7.18 71.98 0.52 -2.28 16 2 C 0.18 2.41 0.80 -10.79 -0.01 2.40 16 3 O -0.56 -10.42 11.85 -131.51 -1.56 -11.98 16 4 C -0.16 -1.44 4.95 29.85 0.15 -1.30 16 5 C 0.51 9.09 7.39 87.66 0.65 9.74 16 6 O -0.56 -15.92 12.70 14.40 0.18 -15.74 16 7 N -0.71 -10.36 5.23 -436.01 -2.28 -12.64 16 8 C 0.15 3.22 3.31 46.38 0.15 3.38 16 9 H 0.08 2.14 7.73 -2.39 -0.02 2.12 16 10 C -0.14 -3.46 6.64 31.77 0.21 -3.25 16 11 C 0.06 2.03 5.65 86.65 0.49 2.52 16 12 N -0.53 -16.91 4.85 -890.07 -4.32 -21.23 16 13 C 0.06 1.86 5.03 85.56 0.43 2.29 16 14 C 0.44 20.99 7.43 87.66 0.65 21.64 16 15 O -0.62 -35.00 15.12 -3.07 -0.05 -35.04 16 16 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 17 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 18 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 20 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 21 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C 0.05 0.95 6.31 86.77 0.55 1.50 16 26 C -0.18 -1.63 5.32 -10.79 -0.06 -1.68 16 27 C -0.17 -1.49 9.65 30.59 0.30 -1.20 16 28 C -0.18 -1.89 9.85 30.60 0.30 -1.58 16 29 H 0.08 1.10 6.74 -2.39 -0.02 1.09 16 30 H 0.05 0.95 6.96 -2.39 -0.02 0.94 16 31 H 0.06 1.53 5.51 -2.39 -0.01 1.51 16 32 H 0.38 4.02 9.05 -74.06 -0.67 3.35 16 33 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.42 3.01 8.52 -92.71 -0.79 2.22 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.48 7.31 -2.39 -0.02 1.47 16 40 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 41 H 0.11 3.25 8.07 -2.39 -0.02 3.23 16 42 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 43 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.08 1.23 7.67 -2.39 -0.02 1.21 16 45 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 46 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.10 0.94 5.89 -2.39 -0.01 0.92 16 48 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.08 1.16 7.29 -2.39 -0.02 1.14 16 Total: -1.00 -79.56 398.98 -2.94 -82.49 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -1.21 Total: 35.17 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.61 Total: 13.82 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -7.94 Total: -114.00 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -1.42 Total: -62.76 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -79.56 -2.94 -82.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.991 kcal (2) G-P(sol) polarization free energy of solvation -79.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds