Wall clock time and date at job start Tue Mar 31 2020 23:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47030 * 2 1 4 4 C 1.52994 * 109.47227 * 120.00256 * 2 1 3 5 5 C 1.50694 * 109.47239 * 177.12284 * 4 2 1 6 6 O 1.21284 * 120.00185 * 5.65736 * 5 4 2 7 7 N 1.34776 * 120.00236 * 185.65837 * 5 4 2 8 8 C 1.46502 * 120.00277 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.28508 * 35.67784 * 8 7 5 10 10 C 1.54256 * 110.32525 * 273.54825 * 8 7 5 11 11 C 1.54381 * 105.06209 * 241.10115 * 10 8 7 12 12 N 1.48563 * 104.59098 * 23.85378 * 11 10 8 13 13 C 1.46905 * 111.00042 * 200.95750 * 12 11 10 14 14 C 1.50696 * 109.47298 * 290.13218 * 13 12 11 15 15 O 1.21294 * 119.99824 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00107 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99743 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00477 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99670 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46910 * 89.99580 * 21 19 17 23 23 H 1.48494 * 109.47738 * 209.99683 * 21 19 17 24 24 H 1.48499 * 109.47019 * 330.00057 * 21 19 17 25 25 C 1.48560 * 104.22343 * 320.51422 * 12 11 10 26 26 C 1.52999 * 109.47090 * 240.00114 * 2 1 3 27 27 C 1.53005 * 117.49747 * 60.00169 * 26 2 1 28 28 C 1.52998 * 60.00390 * 107.48761 * 27 26 2 29 29 H 1.08998 * 109.47297 * 174.74206 * 1 2 3 30 30 H 1.08999 * 109.47269 * 294.73944 * 1 2 3 31 31 H 1.08997 * 109.47628 * 54.73865 * 1 2 3 32 32 H 0.96692 * 114.00042 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47260 * 297.11889 * 4 2 1 34 34 H 1.08998 * 109.47600 * 57.11996 * 4 2 1 35 35 H 0.97000 * 120.00000 * 0.02562 * 7 5 4 36 36 H 1.08991 * 110.32827 * 359.97438 * 10 8 7 37 37 H 1.09004 * 110.32246 * 122.10723 * 10 8 7 38 38 H 1.09000 * 110.41535 * 142.63331 * 11 10 8 39 39 H 1.09000 * 110.41393 * 264.96226 * 11 10 8 40 40 H 1.09011 * 109.46480 * 50.12763 * 13 12 11 41 41 H 1.08991 * 109.47388 * 170.12678 * 13 12 11 42 42 H 0.96997 * 120.00054 * 359.97438 * 16 14 13 43 43 H 0.96998 * 120.00310 * 180.02562 * 20 19 17 44 44 H 1.08993 * 110.41728 * 280.70419 * 25 12 11 45 45 H 1.09007 * 110.41163 * 158.26121 * 25 12 11 46 46 H 1.08998 * 115.56518 * 274.30660 * 26 2 1 47 47 H 1.08995 * 117.49819 * 359.97438 * 27 26 2 48 48 H 1.09000 * 117.49662 * 214.97575 * 27 26 2 49 49 H 1.08996 * 117.49950 * 107.48129 * 28 27 26 50 50 H 1.09002 * 117.49811 * 252.51650 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5452 -0.7833 1.2140 6 8 4.1555 -0.2105 0.3363 7 7 4.2134 -1.4755 2.1579 8 6 5.6768 -1.5363 2.1234 9 1 6.0861 -0.5896 1.7706 10 6 6.1437 -2.6933 1.2164 11 6 6.9424 -3.6335 2.1445 12 7 6.4197 -3.3483 3.5056 13 6 7.3777 -3.7698 4.5365 14 6 7.4441 -5.2748 4.5754 15 8 6.7601 -5.9317 3.8192 16 7 8.2633 -5.8908 5.4505 17 6 8.3232 -7.2600 5.4863 18 1 7.7136 -7.8450 4.8136 19 6 9.1674 -7.8951 6.3889 20 7 9.9088 -7.1834 7.2078 21 14 9.2486 -9.7607 6.4382 22 1 10.2993 -10.2353 5.5023 23 1 9.5757 -10.2058 7.8166 24 1 7.9352 -10.3241 6.0347 25 6 6.2325 -1.8747 3.5234 26 6 2.0399 -0.7212 -1.2492 27 6 1.6357 -0.1494 -2.6096 28 6 3.0741 0.0053 -2.1118 29 1 -0.3634 -1.0233 -0.0942 30 1 -0.3634 0.4301 0.9333 31 1 -0.3634 0.5932 -0.8391 32 1 2.9702 1.4237 0.0004 33 1 1.7194 -0.1785 2.1384 34 1 1.6351 -1.7329 1.2754 35 1 3.7254 -1.9340 2.8597 36 1 5.2843 -3.2162 0.7971 37 1 6.7824 -2.3145 0.4183 38 1 6.7611 -4.6747 1.8781 39 1 8.0073 -3.4076 2.0893 40 1 8.3638 -3.3686 4.3017 41 1 7.0548 -3.3950 5.5076 42 1 8.8105 -5.3654 6.0550 43 1 10.4984 -7.6267 7.8377 44 1 7.1860 -1.3722 3.6856 45 1 5.5166 -1.5917 4.2952 46 1 2.1271 -1.8044 -1.1644 47 1 1.0061 0.7403 -2.6145 48 1 1.4568 -0.8564 -3.4197 49 1 3.8415 -0.6000 -2.5942 50 1 3.3910 0.9970 -1.7890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266315329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:02 Heat of formation + Delta-G solvation = -90.241076 kcal Electronic energy + Delta-G solvation = -29903.625116 eV Core-core repulsion = 25738.635278 eV Total energy + Delta-G solvation = -4164.989838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.71268 -39.39234 -38.33154 -37.37537 -35.14939 -34.43105 -33.82087 -32.52375 -31.39200 -30.89068 -28.98826 -27.97705 -26.41908 -24.25878 -23.63990 -22.37005 -21.40762 -21.25279 -20.41943 -20.00560 -19.21321 -17.91351 -17.43497 -17.03488 -16.74427 -16.07987 -15.80423 -15.69716 -15.29623 -14.79148 -14.55750 -14.43683 -14.25800 -13.87603 -13.79374 -13.27038 -13.10600 -12.95536 -12.77239 -12.53144 -12.48415 -12.35451 -12.03520 -12.02466 -11.77165 -11.52503 -11.51195 -11.46722 -11.28126 -11.13430 -10.93402 -10.74341 -10.60795 -10.41343 -10.39787 -10.24349 -10.04705 -9.71519 -9.52061 -9.21735 -8.55024 -8.09222 -7.97793 -6.44157 -3.85020 2.44466 2.99896 3.15661 3.24550 3.30229 3.67097 3.87243 3.98678 4.02306 4.23306 4.35043 4.43507 4.48846 4.57956 4.74775 4.86807 4.91730 5.03521 5.07915 5.16388 5.18052 5.24316 5.26224 5.30812 5.34221 5.41134 5.53105 5.54050 5.62093 5.64182 5.68228 5.73640 5.78086 5.87883 5.90825 5.92924 6.02470 6.11165 6.12874 6.23554 6.39128 6.40811 7.02910 7.11715 7.35805 7.52739 7.54925 8.03463 8.07421 8.59072 9.15686 9.51752 10.03492 10.73570 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.001877 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.448224 B =14915.176162 C =15094.835769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.180 3.820 3 O -0.564 6.564 4 C -0.171 4.171 5 C 0.516 3.484 6 O -0.539 6.539 7 N -0.714 5.714 8 C 0.145 3.855 9 H 0.093 0.907 10 C -0.131 4.131 11 C 0.037 3.963 12 N -0.484 5.484 13 C 0.034 3.966 14 C 0.445 3.555 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.020 3.980 26 C -0.177 4.177 27 C -0.182 4.182 28 C -0.141 4.141 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.386 0.614 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 16.677 -11.331 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.139 3.861 3 O -0.375 6.375 4 C -0.211 4.211 5 C 0.303 3.697 6 O -0.418 6.418 7 N -0.365 5.365 8 C 0.040 3.960 9 H 0.111 0.889 10 C -0.170 4.170 11 C -0.091 4.091 12 N -0.208 5.208 13 C -0.098 4.098 14 C 0.230 3.770 15 O -0.462 6.462 16 N -0.202 5.202 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.109 4.109 26 C -0.195 4.195 27 C -0.219 4.219 28 C -0.178 4.178 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.240 0.760 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.484 16.404 -12.185 25.047 hybrid contribution 1.755 -0.778 0.899 2.120 sum -12.729 15.626 -11.286 23.099 Atomic orbital electron populations 1.21730 0.92194 1.02496 1.02928 1.20270 0.93833 0.81820 0.90182 1.86416 1.29038 1.25396 1.96695 1.22488 0.92896 1.04078 1.01621 1.20603 0.89851 0.78116 0.81171 1.90607 1.69940 1.45876 1.35336 1.46126 1.07243 1.52915 1.30259 1.21658 0.79845 0.99257 0.95270 0.88858 1.22752 1.00659 0.95847 0.97736 1.23186 0.96116 1.01804 0.88022 1.65184 1.42771 1.10011 1.02844 1.22065 0.94569 0.96503 0.96644 1.19673 0.84346 0.88279 0.84729 1.90505 1.45919 1.66300 1.43478 1.41860 1.37661 1.07467 1.33164 1.19684 1.22930 0.81454 1.18717 0.87941 1.25263 0.96209 1.00604 0.95919 1.69608 1.26376 1.36306 1.22041 0.85858 0.78818 0.82266 0.77353 1.20433 1.20923 1.19418 1.23450 1.00582 0.90329 0.96497 1.22855 1.05630 0.99115 0.91926 1.22977 0.99455 1.03006 0.96504 1.22690 0.91353 1.02052 1.01672 0.91050 0.91925 0.91465 0.76037 0.87935 0.88026 0.75964 0.90705 0.91004 0.88152 0.94251 0.93122 0.89259 0.77516 0.91874 0.92573 0.89549 0.88136 0.88845 0.89398 0.89488 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.61 37.16 0.32 -0.66 16 2 C 0.18 1.56 0.92 -90.63 -0.08 1.47 16 3 O -0.56 -5.91 12.12 -53.17 -0.64 -6.56 16 4 C -0.17 -1.28 4.98 -27.89 -0.14 -1.42 16 5 C 0.52 4.99 7.31 -10.99 -0.08 4.91 16 6 O -0.54 -6.33 11.09 -12.38 -0.14 -6.46 16 7 N -0.71 -6.71 5.00 -52.47 -0.26 -6.97 16 8 C 0.14 1.56 3.36 -66.55 -0.22 1.33 16 9 H 0.09 1.01 7.64 -51.93 -0.40 0.62 16 10 C -0.13 -1.62 6.78 -25.35 -0.17 -1.79 16 11 C 0.04 0.56 5.80 -2.18 -0.01 0.54 16 12 N -0.48 -7.43 5.06 -231.40 -1.17 -8.60 16 13 C 0.03 0.58 5.30 -4.98 -0.03 0.55 16 14 C 0.44 10.21 7.58 -10.99 -0.08 10.13 16 15 O -0.58 -15.21 14.42 5.54 0.08 -15.13 16 16 N -0.56 -14.05 5.29 -10.97 -0.06 -14.10 16 17 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 21 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.02 0.23 6.10 -2.18 -0.01 0.21 16 26 C -0.18 -1.63 4.01 -90.61 -0.36 -2.00 16 27 C -0.18 -1.59 9.73 -26.73 -0.26 -1.85 16 28 C -0.14 -1.40 8.01 -26.73 -0.21 -1.61 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 32 H 0.39 4.09 5.26 45.56 0.24 4.33 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.41 3.37 8.56 -40.82 -0.35 3.03 16 36 H 0.07 0.99 7.95 -51.93 -0.41 0.57 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.86 6.91 -51.93 -0.36 1.50 16 39 H 0.04 0.58 7.83 -51.93 -0.41 0.18 16 40 H 0.05 0.79 7.88 -51.92 -0.41 0.38 16 41 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 42 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.06 0.59 8.00 -51.93 -0.42 0.17 16 45 H 0.09 0.87 7.99 -51.93 -0.41 0.46 16 46 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 47 H 0.09 0.82 7.66 -51.93 -0.40 0.42 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.10 1.02 6.28 -51.93 -0.33 0.70 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -31.43 396.60 -9.78 -41.21 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -7.67 Total: 16.41 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.59 Total: 1.95 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.77 Total: -53.22 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.70 Total: -28.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.43 -9.78 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.032 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds