Wall clock time and date at job start Tue Mar 31 2020 23:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47030 * 2 1 4 4 C 1.52994 * 109.47227 * 120.00256 * 2 1 3 5 5 C 1.50694 * 109.47239 * 177.12284 * 4 2 1 6 6 O 1.21284 * 120.00185 * 5.65736 * 5 4 2 7 7 N 1.34776 * 120.00236 * 185.65837 * 5 4 2 8 8 C 1.46502 * 120.00277 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.28508 * 35.67784 * 8 7 5 10 10 C 1.54256 * 110.32525 * 273.54825 * 8 7 5 11 11 C 1.54381 * 105.06209 * 241.10115 * 10 8 7 12 12 N 1.48563 * 104.59098 * 23.85378 * 11 10 8 13 13 C 1.46905 * 111.00042 * 200.95750 * 12 11 10 14 14 C 1.50696 * 109.47298 * 290.13218 * 13 12 11 15 15 O 1.21294 * 119.99824 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00107 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99743 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00477 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99670 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46910 * 89.99580 * 21 19 17 23 23 H 1.48494 * 109.47738 * 209.99683 * 21 19 17 24 24 H 1.48499 * 109.47019 * 330.00057 * 21 19 17 25 25 C 1.48560 * 104.22343 * 320.51422 * 12 11 10 26 26 C 1.52999 * 109.47090 * 240.00114 * 2 1 3 27 27 C 1.53005 * 117.49747 * 60.00169 * 26 2 1 28 28 C 1.52998 * 60.00390 * 107.48761 * 27 26 2 29 29 H 1.08998 * 109.47297 * 174.74206 * 1 2 3 30 30 H 1.08999 * 109.47269 * 294.73944 * 1 2 3 31 31 H 1.08997 * 109.47628 * 54.73865 * 1 2 3 32 32 H 0.96692 * 114.00042 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47260 * 297.11889 * 4 2 1 34 34 H 1.08998 * 109.47600 * 57.11996 * 4 2 1 35 35 H 0.97000 * 120.00000 * 0.02562 * 7 5 4 36 36 H 1.08991 * 110.32827 * 359.97438 * 10 8 7 37 37 H 1.09004 * 110.32246 * 122.10723 * 10 8 7 38 38 H 1.09000 * 110.41535 * 142.63331 * 11 10 8 39 39 H 1.09000 * 110.41393 * 264.96226 * 11 10 8 40 40 H 1.09011 * 109.46480 * 50.12763 * 13 12 11 41 41 H 1.08991 * 109.47388 * 170.12678 * 13 12 11 42 42 H 0.96997 * 120.00054 * 359.97438 * 16 14 13 43 43 H 0.96998 * 120.00310 * 180.02562 * 20 19 17 44 44 H 1.08993 * 110.41728 * 280.70419 * 25 12 11 45 45 H 1.09007 * 110.41163 * 158.26121 * 25 12 11 46 46 H 1.08998 * 115.56518 * 274.30660 * 26 2 1 47 47 H 1.08995 * 117.49819 * 359.97438 * 27 26 2 48 48 H 1.09000 * 117.49662 * 214.97575 * 27 26 2 49 49 H 1.08996 * 117.49950 * 107.48129 * 28 27 26 50 50 H 1.09002 * 117.49811 * 252.51650 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5452 -0.7833 1.2140 6 8 4.1555 -0.2105 0.3363 7 7 4.2134 -1.4755 2.1579 8 6 5.6768 -1.5363 2.1234 9 1 6.0861 -0.5896 1.7706 10 6 6.1437 -2.6933 1.2164 11 6 6.9424 -3.6335 2.1445 12 7 6.4197 -3.3483 3.5056 13 6 7.3777 -3.7698 4.5365 14 6 7.4441 -5.2748 4.5754 15 8 6.7601 -5.9317 3.8192 16 7 8.2633 -5.8908 5.4505 17 6 8.3232 -7.2600 5.4863 18 1 7.7136 -7.8450 4.8136 19 6 9.1674 -7.8951 6.3889 20 7 9.9088 -7.1834 7.2078 21 14 9.2486 -9.7607 6.4382 22 1 10.2993 -10.2353 5.5023 23 1 9.5757 -10.2058 7.8166 24 1 7.9352 -10.3241 6.0347 25 6 6.2325 -1.8747 3.5234 26 6 2.0399 -0.7212 -1.2492 27 6 1.6357 -0.1494 -2.6096 28 6 3.0741 0.0053 -2.1118 29 1 -0.3634 -1.0233 -0.0942 30 1 -0.3634 0.4301 0.9333 31 1 -0.3634 0.5932 -0.8391 32 1 2.9702 1.4237 0.0004 33 1 1.7194 -0.1785 2.1384 34 1 1.6351 -1.7329 1.2754 35 1 3.7254 -1.9340 2.8597 36 1 5.2843 -3.2162 0.7971 37 1 6.7824 -2.3145 0.4183 38 1 6.7611 -4.6747 1.8781 39 1 8.0073 -3.4076 2.0893 40 1 8.3638 -3.3686 4.3017 41 1 7.0548 -3.3950 5.5076 42 1 8.8105 -5.3654 6.0550 43 1 10.4984 -7.6267 7.8377 44 1 7.1860 -1.3722 3.6856 45 1 5.5166 -1.5917 4.2952 46 1 2.1271 -1.8044 -1.1644 47 1 1.0061 0.7403 -2.6145 48 1 1.4568 -0.8564 -3.4197 49 1 3.8415 -0.6000 -2.5942 50 1 3.3910 0.9970 -1.7890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266315329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:01 Heat of formation + Delta-G solvation = -113.939717 kcal Electronic energy + Delta-G solvation = -29904.652766 eV Core-core repulsion = 25738.635278 eV Total energy + Delta-G solvation = -4166.017488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49495 -40.58717 -39.59749 -38.56777 -36.00227 -35.87245 -35.19049 -33.36402 -33.17775 -32.07038 -29.85936 -28.91977 -27.81458 -25.97161 -24.34430 -23.11256 -22.51837 -22.18799 -21.28687 -20.96870 -20.70114 -19.87206 -18.23100 -17.84317 -17.67288 -17.56749 -16.81141 -16.65824 -16.40055 -16.27464 -15.97863 -15.60672 -15.40798 -15.16624 -14.96541 -14.52270 -14.11766 -13.81416 -13.64444 -13.59444 -13.49455 -13.25030 -13.12586 -13.03388 -12.99436 -12.85819 -12.72218 -12.58918 -12.41106 -12.20692 -12.14101 -12.10902 -11.95969 -11.85713 -11.47365 -11.33802 -11.14008 -10.74843 -10.47870 -10.33842 -10.01634 -9.97893 -9.38359 -8.46266 -5.94550 1.37536 1.41402 1.53818 1.70636 2.06957 2.25141 2.28654 2.81810 2.95825 3.20581 3.35339 3.38583 3.52025 3.69647 3.81238 3.84566 3.89258 4.14306 4.14948 4.21198 4.28518 4.31309 4.43270 4.44904 4.50749 4.54224 4.55756 4.68166 4.70745 4.77035 4.79411 4.83637 4.89086 4.93811 5.00943 5.07330 5.15616 5.18026 5.31395 5.32857 5.38523 5.41217 5.55833 5.82793 5.90323 6.07372 6.61484 6.62827 6.79660 7.13965 7.34044 7.57822 8.13896 8.71095 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.001877 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.448224 B =14915.176162 C =15094.835769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.175 3.825 3 O -0.575 6.575 4 C -0.165 4.165 5 C 0.513 3.487 6 O -0.561 6.561 7 N -0.710 5.710 8 C 0.153 3.847 9 H 0.099 0.901 10 C -0.121 4.121 11 C 0.038 3.962 12 N -0.502 5.502 13 C 0.046 3.954 14 C 0.442 3.558 15 O -0.616 6.616 16 N -0.576 5.576 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.026 3.974 26 C -0.176 4.176 27 C -0.174 4.174 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.383 0.617 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.254 17.587 -10.638 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.134 3.866 3 O -0.387 6.387 4 C -0.205 4.205 5 C 0.301 3.699 6 O -0.441 6.441 7 N -0.362 5.362 8 C 0.047 3.953 9 H 0.117 0.883 10 C -0.160 4.160 11 C -0.090 4.090 12 N -0.226 5.226 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.502 6.502 16 N -0.213 5.213 17 C -0.460 4.460 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.101 4.101 26 C -0.194 4.194 27 C -0.211 4.211 28 C -0.189 4.189 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.236 0.764 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.252 17.339 -11.475 25.786 hybrid contribution 1.967 -1.028 0.622 2.305 sum -13.285 16.310 -10.853 23.671 Atomic orbital electron populations 1.21756 0.90941 1.03448 1.03095 1.20457 0.94719 0.81114 0.90294 1.86410 1.28850 1.26652 1.96771 1.22490 0.91119 1.05193 1.01677 1.20997 0.90745 0.77514 0.80638 1.90611 1.70573 1.46745 1.36163 1.46078 1.06693 1.52891 1.30492 1.21516 0.80724 0.98493 0.94524 0.88332 1.22650 0.99960 0.95782 0.97624 1.23041 0.96779 1.00117 0.89045 1.65113 1.42239 1.13100 1.02167 1.21933 0.96363 0.91620 0.98595 1.20780 0.82480 0.90945 0.82903 1.90484 1.47047 1.68111 1.44566 1.41933 1.38546 1.06816 1.34038 1.19623 1.23960 0.82908 1.19514 0.90432 1.26015 0.95417 1.04784 0.95158 1.69665 1.26467 1.37839 1.22179 0.84949 0.78556 0.77073 0.77897 1.19765 1.19560 1.19823 1.23516 1.01976 0.87412 0.97228 1.22910 1.05040 0.98969 0.92514 1.22996 0.98338 1.03094 0.96653 1.22613 0.91834 1.01702 1.02738 0.89565 0.91193 0.92055 0.76356 0.86319 0.86279 0.75154 0.91815 0.90232 0.92309 0.93998 0.91149 0.86772 0.77031 0.91358 0.90911 0.87689 0.88336 0.88817 0.88513 0.90309 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.61 71.98 0.62 -1.04 16 2 C 0.18 2.74 0.92 -10.80 -0.01 2.73 16 3 O -0.58 -11.50 12.12 -131.83 -1.60 -13.10 16 4 C -0.16 -2.10 4.98 29.84 0.15 -1.95 16 5 C 0.51 9.03 7.31 87.66 0.64 9.67 16 6 O -0.56 -12.59 11.09 14.11 0.16 -12.43 16 7 N -0.71 -11.85 5.00 -438.29 -2.19 -14.04 16 8 C 0.15 2.98 3.36 45.89 0.15 3.13 16 9 H 0.10 1.90 7.64 -2.39 -0.02 1.88 16 10 C -0.12 -2.90 6.78 31.49 0.21 -2.68 16 11 C 0.04 1.17 5.80 86.45 0.50 1.67 16 12 N -0.50 -14.70 5.06 -886.02 -4.49 -19.19 16 13 C 0.05 1.50 5.30 85.55 0.45 1.96 16 14 C 0.44 20.48 7.58 87.66 0.66 21.14 16 15 O -0.62 -33.41 14.42 -3.07 -0.04 -33.46 16 16 N -0.58 -29.04 5.29 -306.99 -1.62 -30.67 16 17 C -0.33 -18.59 9.68 84.04 0.81 -17.77 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 21 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.03 0.52 6.10 86.45 0.53 1.05 16 26 C -0.18 -3.07 4.01 -10.79 -0.04 -3.12 16 27 C -0.17 -2.90 9.73 30.60 0.30 -2.60 16 28 C -0.15 -3.00 8.01 30.60 0.25 -2.75 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.83 7.48 -2.39 -0.02 0.81 16 32 H 0.38 7.96 5.26 -74.06 -0.39 7.57 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.41 5.85 8.56 -92.71 -0.79 5.05 16 36 H 0.06 1.67 7.95 -2.39 -0.02 1.65 16 37 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.06 2.28 6.91 -2.39 -0.02 2.26 16 39 H 0.04 1.23 7.83 -2.39 -0.02 1.21 16 40 H 0.07 2.03 7.88 -2.38 -0.02 2.01 16 41 H 0.11 3.17 8.13 -2.39 -0.02 3.15 16 42 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 43 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 44 H 0.07 1.25 8.00 -2.39 -0.02 1.23 16 45 H 0.10 1.72 7.99 -2.38 -0.02 1.70 16 46 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 47 H 0.09 1.56 7.66 -2.39 -0.02 1.54 16 48 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.09 1.91 6.28 -2.39 -0.01 1.89 16 Total: -1.00 -69.19 396.60 -2.72 -71.91 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.94 Total: 46.02 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.69 Total: 9.15 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -8.02 Total: -112.82 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -1.49 Total: -58.99 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -69.19 -2.72 -71.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.026 kcal (2) G-P(sol) polarization free energy of solvation -69.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds