Wall clock time and date at job start Tue Mar 31 2020 23:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46598 * 2 1 4 4 C 1.52997 * 109.47178 * 119.99877 * 2 1 3 5 5 C 1.50692 * 109.47035 * 180.67521 * 4 2 1 6 6 O 1.21279 * 120.00112 * 354.39109 * 5 4 2 7 7 N 1.34780 * 120.00130 * 174.39700 * 5 4 2 8 8 C 1.46497 * 120.00196 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.27533 * 327.09125 * 8 7 5 10 10 C 1.54598 * 110.30989 * 89.28470 * 8 7 5 11 11 C 1.54929 * 102.92305 * 140.87655 * 10 8 7 12 12 N 1.48533 * 103.22614 * 322.58513 * 11 10 8 13 13 C 1.46905 * 110.99966 * 159.72492 * 12 11 10 14 14 C 1.50698 * 109.46927 * 52.60300 * 13 12 11 15 15 O 1.21293 * 120.00529 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99508 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99930 * 179.72568 * 16 14 13 18 18 H 1.08006 * 119.99700 * 0.27441 * 17 16 14 19 19 C 1.38943 * 120.00349 * 180.27861 * 17 16 14 20 20 N 1.31415 * 119.99735 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00282 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47711 * 59.99349 * 21 19 17 23 23 H 1.48504 * 109.47461 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46982 * 299.99501 * 21 19 17 25 25 C 1.47896 * 105.82091 * 39.20609 * 12 11 10 26 26 C 1.53000 * 109.47221 * 240.00153 * 2 1 3 27 27 C 1.52995 * 117.49906 * 128.74333 * 26 2 1 28 28 C 1.53001 * 117.50010 * 60.08302 * 26 2 1 29 29 H 1.08997 * 109.47635 * 304.79994 * 1 2 3 30 30 H 1.08996 * 109.47385 * 64.80699 * 1 2 3 31 31 H 1.09008 * 109.46781 * 184.80204 * 1 2 3 32 32 H 0.96696 * 113.99310 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47071 * 60.67259 * 4 2 1 34 34 H 1.09000 * 109.46995 * 300.67474 * 4 2 1 35 35 H 0.96997 * 119.99892 * 359.97438 * 7 5 4 36 36 H 1.09008 * 110.72345 * 259.23739 * 10 8 7 37 37 H 1.08999 * 110.72211 * 22.51388 * 10 8 7 38 38 H 1.09006 * 110.66671 * 204.15521 * 11 10 8 39 39 H 1.08991 * 110.67290 * 81.02425 * 11 10 8 40 40 H 1.08994 * 109.47048 * 292.60430 * 13 12 11 41 41 H 1.09000 * 109.47065 * 172.60189 * 13 12 11 42 42 H 0.96993 * 120.00006 * 0.02562 * 16 14 13 43 43 H 0.96999 * 119.99676 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.91377 * 94.02493 * 25 12 11 45 45 H 1.08997 * 109.91989 * 215.31274 * 25 12 11 46 46 H 1.09003 * 115.54845 * 274.41524 * 26 2 1 47 47 H 1.09005 * 117.49757 * 0.02562 * 27 26 2 48 48 H 1.08996 * 117.49947 * 145.01380 * 27 26 2 49 49 H 1.08993 * 117.49842 * 214.97832 * 28 26 2 50 50 H 1.09004 * 117.49481 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5468 -0.7067 1.2576 6 8 4.1543 -0.2634 0.3061 7 7 4.2195 -1.1865 2.3224 8 6 5.6844 -1.1729 2.3303 9 1 6.0689 -1.3170 1.3207 10 6 6.2055 0.1576 2.9204 11 6 7.4241 -0.2917 3.7651 12 7 6.9788 -1.5857 4.3426 13 6 8.1279 -2.3933 4.7732 14 6 9.0066 -1.5723 5.6814 15 8 8.7051 -0.4273 5.9445 16 7 10.1271 -2.1108 6.2022 17 6 10.9295 -1.3622 7.0240 18 1 10.6615 -0.3423 7.2575 19 6 12.0877 -1.9153 7.5562 20 7 12.4136 -3.1564 7.2723 21 14 13.1806 -0.8956 8.6764 22 1 12.4059 -0.4687 9.8692 23 1 14.3451 -1.7101 9.1073 24 1 13.6601 0.3032 7.9426 25 6 6.2240 -2.2678 3.2691 26 6 2.0400 -0.7212 -1.2493 27 6 3.0762 0.0040 -2.1101 28 6 1.6374 -0.1483 -2.6096 29 1 -0.3634 0.5865 0.8438 30 1 -0.3634 0.4374 -0.9299 31 1 -0.3633 -1.0241 0.0860 32 1 2.9702 1.4237 0.0004 33 1 1.6866 -1.7523 1.2432 34 1 1.6668 -0.2144 2.1391 35 1 3.7337 -1.5408 3.0835 36 1 6.5160 0.8365 2.1261 37 1 5.4484 0.6221 3.5522 38 1 7.6323 0.4305 4.5546 39 1 8.2997 -0.4340 3.1319 40 1 8.6999 -2.7061 3.8998 41 1 7.7729 -3.2734 5.3094 42 1 10.3680 -3.0265 5.9921 43 1 13.2223 -3.5424 7.6436 44 1 6.8850 -2.9369 2.7180 45 1 5.3951 -2.8309 3.6980 46 1 2.1254 -1.8046 -1.1647 47 1 3.3950 0.9948 -1.7862 48 1 3.8432 -0.6022 -2.5921 49 1 1.4583 -0.8547 -3.4201 50 1 1.0088 0.7422 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266315330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:05 Heat of formation + Delta-G solvation = -109.886364 kcal Electronic energy + Delta-G solvation = -29793.365246 eV Core-core repulsion = 25627.523525 eV Total energy + Delta-G solvation = -4165.841721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.51281 -40.70283 -39.58917 -38.55586 -36.05499 -35.88056 -35.23490 -33.39405 -33.20035 -32.07146 -29.85464 -28.92726 -27.77652 -25.94813 -24.33071 -23.11049 -22.55842 -22.07295 -21.45795 -21.06081 -20.70098 -19.87354 -18.28813 -17.87397 -17.67059 -17.51267 -16.79747 -16.64928 -16.42048 -16.34299 -16.03102 -15.61883 -15.40256 -15.05018 -15.00537 -14.57538 -14.08285 -13.83725 -13.66810 -13.61852 -13.41852 -13.35336 -13.16170 -13.03563 -13.00103 -12.89013 -12.66073 -12.58390 -12.43411 -12.26487 -12.19456 -12.13717 -11.93611 -11.81216 -11.46725 -11.31990 -11.16384 -10.75347 -10.44748 -10.29600 -10.03115 -9.90604 -9.36237 -8.47273 -5.95798 1.38980 1.41305 1.51905 1.68946 2.03536 2.19281 2.28819 2.84879 2.97426 3.19638 3.30083 3.33545 3.56382 3.70367 3.80919 3.84222 3.88747 4.13276 4.15205 4.22742 4.28062 4.30827 4.41717 4.45724 4.49083 4.54592 4.57163 4.69664 4.71216 4.78851 4.81295 4.84941 4.91491 4.95248 5.01465 5.10460 5.18076 5.24978 5.33259 5.33753 5.39205 5.40719 5.55868 5.82473 5.92063 6.08368 6.59791 6.61157 6.75233 7.12261 7.32623 7.54893 8.10826 8.69797 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036049 B = 0.001765 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.542085 B =15855.935537 C =15898.303214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.170 3.830 3 O -0.578 6.578 4 C -0.162 4.162 5 C 0.511 3.489 6 O -0.562 6.562 7 N -0.709 5.709 8 C 0.148 3.852 9 H 0.089 0.911 10 C -0.123 4.123 11 C 0.040 3.960 12 N -0.507 5.507 13 C 0.047 3.953 14 C 0.438 3.562 15 O -0.614 6.614 16 N -0.572 5.572 17 C -0.333 4.333 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.031 3.969 26 C -0.168 4.168 27 C -0.154 4.154 28 C -0.176 4.176 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.381 0.619 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.415 0.585 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.276 -1.971 -15.701 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.129 3.871 3 O -0.389 6.389 4 C -0.202 4.202 5 C 0.299 3.701 6 O -0.442 6.442 7 N -0.361 5.361 8 C 0.042 3.958 9 H 0.107 0.893 10 C -0.162 4.162 11 C -0.088 4.088 12 N -0.232 5.232 13 C -0.084 4.084 14 C 0.225 3.775 15 O -0.501 6.501 16 N -0.209 5.209 17 C -0.462 4.462 18 H 0.097 0.903 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.097 4.097 26 C -0.187 4.187 27 C -0.191 4.191 28 C -0.213 4.213 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.233 0.767 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.252 0.748 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.118 0.882 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.823 -0.845 -15.666 28.525 hybrid contribution 2.235 -0.431 0.248 2.290 sum -21.588 -1.276 -15.419 26.560 Atomic orbital electron populations 1.21770 0.90770 1.03772 1.02923 1.20555 0.94853 0.80980 0.90664 1.86431 1.28476 1.27155 1.96822 1.22487 0.90622 1.05636 1.01468 1.21114 0.90946 0.76361 0.81700 1.90673 1.70988 1.47109 1.35418 1.46047 1.06033 1.63566 1.20469 1.21577 0.80807 0.94161 0.99304 0.89306 1.22855 0.97213 0.97587 0.98590 1.23248 0.95644 0.92943 0.96930 1.64618 1.20572 1.03376 1.34607 1.22020 0.91552 0.96550 0.98325 1.20742 0.83115 0.88381 0.85236 1.90444 1.74112 1.20532 1.64992 1.41917 1.20870 1.15028 1.43108 1.19618 1.03762 0.97769 1.25090 0.90260 1.26026 0.98543 0.97305 0.99394 1.69665 1.26727 1.14036 1.45619 0.85000 0.77421 0.77833 0.78154 1.19707 1.19515 1.19814 1.23267 0.99312 0.95795 0.91343 1.22894 1.04428 0.99253 0.92076 1.22592 0.91916 1.01581 1.03045 1.23027 0.98202 1.03097 0.96958 0.91630 0.92144 0.88844 0.76697 0.85097 0.86755 0.74822 0.91003 0.90702 0.90232 0.95418 0.91283 0.86781 0.77002 0.91306 0.91664 0.87508 0.87508 0.89908 0.90168 0.88233 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.75 71.98 0.63 -0.83 16 2 C 0.17 2.47 0.92 -10.79 -0.01 2.46 16 3 O -0.58 -11.89 12.10 -132.77 -1.61 -13.50 16 4 C -0.16 -1.73 4.96 29.84 0.15 -1.58 16 5 C 0.51 8.42 7.32 87.65 0.64 9.06 16 6 O -0.56 -12.72 11.02 13.18 0.15 -12.58 16 7 N -0.71 -10.65 5.06 -438.39 -2.22 -12.87 16 8 C 0.15 3.01 3.34 45.87 0.15 3.16 16 9 H 0.09 1.98 7.56 -2.39 -0.02 1.96 16 10 C -0.12 -3.16 6.78 31.80 0.22 -2.95 16 11 C 0.04 1.34 5.30 86.65 0.46 1.80 16 12 N -0.51 -15.44 5.26 -887.61 -4.67 -20.11 16 13 C 0.05 1.56 5.52 85.56 0.47 2.03 16 14 C 0.44 20.41 7.49 87.66 0.66 21.06 16 15 O -0.61 -32.98 13.10 -3.07 -0.04 -33.02 16 16 N -0.57 -28.98 5.29 -306.97 -1.62 -30.60 16 17 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 18 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 19 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 20 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 21 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.03 0.64 6.47 86.45 0.56 1.20 16 26 C -0.17 -2.63 4.03 -10.79 -0.04 -2.67 16 27 C -0.15 -2.96 7.93 30.62 0.24 -2.72 16 28 C -0.18 -2.73 9.62 30.62 0.29 -2.43 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.74 7.14 -2.39 -0.02 0.72 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.38 8.39 5.33 -74.06 -0.39 7.99 16 33 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.41 4.26 8.35 -92.71 -0.77 3.49 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 38 H 0.08 3.33 5.97 -2.38 -0.01 3.32 16 39 H 0.03 0.96 8.02 -2.39 -0.02 0.94 16 40 H 0.07 2.06 7.81 -2.39 -0.02 2.04 16 41 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 43 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.07 1.25 7.57 -2.38 -0.02 1.23 16 45 H 0.11 1.72 7.65 -2.39 -0.02 1.70 16 46 H 0.11 1.51 8.11 -2.39 -0.02 1.49 16 47 H 0.08 1.82 6.29 -2.38 -0.01 1.81 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.09 1.46 7.59 -2.38 -0.02 1.44 16 Total: -1.00 -69.50 393.29 -2.92 -72.43 By element: Atomic # 1 Polarization: 45.92 SS G_CDS: -0.92 Total: 44.99 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.70 Total: 9.46 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -8.23 Total: -112.55 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -1.50 Total: -59.10 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.50 -2.92 -72.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.460 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds