Wall clock time and date at job start Wed Apr 1 2020 00:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46806 * 2 1 4 4 H 1.09006 * 109.46501 * 305.04226 * 3 2 1 5 5 O 1.42899 * 109.47277 * 65.04365 * 3 2 1 6 6 C 1.42897 * 114.00057 * 258.71736 * 5 3 2 7 7 C 1.50693 * 109.46924 * 185.04702 * 3 2 1 8 8 O 1.21283 * 119.99998 * 244.99802 * 7 3 2 9 9 N 1.34775 * 120.00309 * 64.99968 * 7 3 2 10 10 C 1.47821 * 120.39615 * 1.10822 * 9 7 3 11 11 C 1.53895 * 108.39841 * 132.95753 * 10 9 7 12 12 H 1.08998 * 112.60982 * 181.36248 * 11 10 9 13 13 C 1.54542 * 107.80755 * 305.68167 * 11 10 9 14 14 C 1.54257 * 105.02965 * 88.91016 * 13 11 10 15 15 C 1.54784 * 104.82861 * 0.08355 * 14 13 11 16 16 H 1.08993 * 112.21830 * 146.42529 * 15 14 13 17 17 C 1.47158 * 120.68395 * 180.02562 * 9 7 3 18 18 N 1.48729 * 104.36010 * 24.66027 * 15 14 13 19 19 C 1.46903 * 110.99918 * 78.40660 * 18 15 14 20 20 C 1.50699 * 109.47194 * 75.19982 * 19 18 15 21 21 O 1.21286 * 120.00395 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99699 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99901 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99979 * 359.97438 * 23 22 20 25 25 C 1.38955 * 119.99980 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99775 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 119.99880 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47052 * 90.00050 * 27 25 23 29 29 H 1.48503 * 109.46642 * 209.99664 * 27 25 23 30 30 H 1.48495 * 109.47281 * 329.99633 * 27 25 23 31 31 H 1.08992 * 109.47227 * 55.07884 * 1 2 3 32 32 H 1.09007 * 109.46774 * 175.07300 * 1 2 3 33 33 H 1.08996 * 109.47200 * 295.07064 * 1 2 3 34 34 H 1.08997 * 109.47496 * 239.99730 * 2 1 3 35 35 H 1.09008 * 109.47134 * 119.99255 * 2 1 3 36 36 H 1.09000 * 109.47136 * 65.53516 * 6 5 3 37 37 H 1.09007 * 109.47235 * 185.53883 * 6 5 3 38 38 H 1.09005 * 109.46880 * 305.53487 * 6 5 3 39 39 H 1.08999 * 110.36586 * 12.73883 * 10 9 7 40 40 H 1.09006 * 108.77747 * 252.24007 * 10 9 7 41 41 H 1.09000 * 110.34593 * 207.82873 * 13 11 10 42 42 H 1.08998 * 110.34679 * 329.99123 * 13 11 10 43 43 H 1.09002 * 110.34504 * 118.92442 * 14 13 11 44 44 H 1.09002 * 110.34461 * 241.18740 * 14 13 11 45 45 H 1.09000 * 109.74700 * 107.75359 * 17 9 7 46 46 H 1.08999 * 109.74567 * 347.01792 * 17 9 7 47 47 H 1.08994 * 109.47260 * 195.20581 * 19 18 15 48 48 H 1.09008 * 109.46587 * 315.20161 * 19 18 15 49 49 H 0.97000 * 119.99979 * 359.97438 * 22 20 19 50 50 H 0.96995 * 120.00166 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9817 -0.8415 5 8 1.6628 2.0811 1.2215 6 6 0.5292 2.9428 1.1009 7 6 3.5417 1.4444 -0.1250 8 8 4.2255 1.8610 0.7860 9 7 4.1250 0.9832 -1.2490 10 6 3.2994 0.4962 -2.3744 11 6 3.8358 1.1191 -3.6754 12 1 3.2584 0.8226 -4.5511 13 6 3.8662 2.6527 -3.4877 14 6 5.2534 2.9544 -2.8842 15 6 5.9412 1.5732 -2.7622 16 1 7.0179 1.6335 -2.9204 17 6 5.5901 0.9776 -1.3869 18 7 5.2678 0.7338 -3.7889 19 6 5.7870 1.0267 -5.1315 20 6 7.1513 0.4061 -5.2890 21 8 7.6426 -0.2190 -4.3731 22 7 7.8254 0.5459 -6.4476 23 6 9.0664 -0.0191 -6.5911 24 1 9.5038 -0.5757 -5.7755 25 6 9.7612 0.1245 -7.7858 26 7 10.9508 -0.4166 -7.9231 27 14 9.0048 1.0880 -9.1962 28 1 9.3952 2.5164 -9.0853 29 1 9.4927 0.5403 -10.4874 30 1 7.5255 0.9729 -9.1370 31 1 -0.3633 0.5882 -0.8426 32 1 -0.3633 -1.0240 -0.0883 33 1 -0.3633 0.4354 0.9308 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 -0.3527 2.3508 0.8561 37 1 0.3667 3.4637 2.0446 38 1 0.7089 3.6712 0.3101 39 1 2.2572 0.7818 -2.2317 40 1 3.3808 -0.5896 -2.4251 41 1 3.7538 3.1545 -4.4488 42 1 3.0785 2.9664 -2.8028 43 1 5.8225 3.6045 -3.5487 44 1 5.1473 3.4147 -1.9018 45 1 5.9621 -0.0449 -1.3222 46 1 6.0364 1.5834 -0.5983 47 1 5.1113 0.6137 -5.8804 48 1 5.8612 2.1060 -5.2649 49 1 7.4323 1.0455 -7.1802 50 1 11.4361 -0.3160 -8.7569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267388740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:24 Heat of formation + Delta-G solvation = -83.946869 kcal Electronic energy + Delta-G solvation = -31385.585040 eV Core-core repulsion = 27220.868140 eV Total energy + Delta-G solvation = -4164.716901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27895 -39.58839 -38.14981 -37.58695 -34.96376 -33.96452 -33.49288 -31.74294 -31.60607 -31.20511 -29.03402 -27.86705 -26.29876 -25.59762 -24.62276 -23.71670 -22.38097 -20.74650 -20.56524 -19.42172 -18.83920 -18.28538 -17.75076 -17.00962 -16.40207 -15.99865 -15.89405 -15.70517 -14.97994 -14.94474 -14.72711 -14.59295 -14.18547 -14.08429 -13.89295 -13.64833 -13.61335 -13.19077 -12.92398 -12.70630 -12.65481 -12.54418 -12.26617 -12.23202 -12.11989 -11.95659 -11.75607 -11.51445 -11.31679 -11.19520 -11.12655 -10.95606 -10.88105 -10.61797 -10.54176 -10.25171 -9.98931 -9.57481 -9.49587 -8.94885 -8.53831 -8.22464 -8.18124 -6.32013 -3.83433 2.48354 2.60767 3.00120 3.04493 3.13208 3.55207 3.69741 3.76104 4.08599 4.16189 4.40727 4.47246 4.50199 4.52816 4.69955 4.82216 4.83214 4.90535 4.93141 4.94449 4.98484 5.09237 5.19051 5.20868 5.27237 5.31662 5.36585 5.38394 5.52347 5.53561 5.60362 5.66658 5.68097 5.69872 5.73743 5.83722 5.84897 5.89868 5.91710 6.07354 6.13885 6.40917 6.71897 6.86169 6.99252 7.31096 7.57052 8.08478 8.13445 8.59124 8.94517 9.41503 9.82447 10.81189 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002496 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.442406 B =11213.326328 C =11352.690734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.085 0.915 5 O -0.357 6.357 6 C 0.025 3.975 7 C 0.509 3.491 8 O -0.525 6.525 9 N -0.602 5.602 10 C 0.118 3.882 11 C 0.044 3.956 12 H 0.107 0.893 13 C -0.145 4.145 14 C -0.149 4.149 15 C 0.059 3.941 16 H 0.115 0.885 17 C 0.131 3.869 18 N -0.475 5.475 19 C 0.032 3.968 20 C 0.453 3.547 21 O -0.557 6.557 22 N -0.593 5.593 23 C -0.303 4.303 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.882 5.882 27 Si 0.879 3.121 28 H -0.272 1.272 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.054 0.946 49 H 0.369 0.631 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.892 6.857 9.480 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C 0.014 3.986 4 H 0.102 0.898 5 O -0.274 6.274 6 C -0.072 4.072 7 C 0.296 3.704 8 O -0.400 6.400 9 N -0.338 5.338 10 C -0.005 4.005 11 C -0.066 4.066 12 H 0.125 0.875 13 C -0.184 4.184 14 C -0.189 4.189 15 C -0.050 4.050 16 H 0.133 0.867 17 C 0.009 3.991 18 N -0.197 5.197 19 C -0.100 4.100 20 C 0.239 3.761 21 O -0.439 6.439 22 N -0.232 5.232 23 C -0.432 4.432 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.522 5.522 27 Si 0.706 3.294 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.072 0.928 49 H 0.202 0.798 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.786 5.976 10.742 26.774 hybrid contribution -0.762 1.745 -1.943 2.720 sum -24.548 7.720 8.799 27.196 Atomic orbital electron populations 1.21834 0.94777 1.02408 1.01980 1.22105 0.97068 0.94828 1.04317 1.22036 0.92402 0.95339 0.88867 0.89771 1.88037 1.48105 1.61663 1.29581 1.23008 0.88262 0.93145 1.02777 1.20506 0.89904 0.77740 0.82283 1.90710 1.64790 1.45845 1.38663 1.48273 1.07537 1.62921 1.15049 1.22201 0.93670 0.99789 0.84836 1.23535 0.91964 0.93289 0.97834 0.87500 1.22854 0.97836 0.96867 1.00858 1.22925 0.95702 0.98753 1.01485 1.23484 1.00442 0.89314 0.91803 0.86670 1.21831 0.78295 1.02640 0.96336 1.65058 1.00731 1.50694 1.03234 1.22020 0.97058 0.99177 0.91700 1.19599 0.86763 0.85775 0.83982 1.90567 1.69373 1.43785 1.40136 1.42219 1.17980 1.49822 1.13228 1.19417 0.91013 1.30813 1.01963 0.86275 1.25037 0.95782 0.97746 0.97638 1.69617 1.11901 1.43842 1.26805 0.86680 0.79159 0.80726 0.82848 1.19718 1.20201 1.19539 0.92708 0.91901 0.92059 0.89680 0.90244 0.93459 0.89292 0.93967 0.89682 0.89931 0.91483 0.91716 0.91476 0.91064 0.89917 0.89024 0.89251 0.92829 0.79819 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.90 37.16 0.33 -0.53 16 2 C -0.15 -1.12 5.23 -26.73 -0.14 -1.26 16 3 C 0.08 0.72 1.85 -27.88 -0.05 0.66 16 4 H 0.08 0.61 6.74 -51.93 -0.35 0.26 16 5 O -0.36 -3.99 9.66 -55.09 -0.53 -4.52 16 6 C 0.02 0.17 10.48 101.05 1.06 1.23 16 7 C 0.51 6.62 7.11 -10.99 -0.08 6.54 16 8 O -0.52 -9.13 15.97 -14.31 -0.23 -9.35 16 9 N -0.60 -7.10 2.32 -170.96 -0.40 -7.49 16 10 C 0.12 1.07 4.22 -2.85 -0.01 1.05 16 11 C 0.04 0.44 3.67 -65.42 -0.24 0.20 16 12 H 0.11 0.87 7.97 -51.93 -0.41 0.45 16 13 C -0.14 -1.39 5.70 -25.26 -0.14 -1.53 16 14 C -0.15 -1.78 5.50 -25.13 -0.14 -1.92 16 15 C 0.06 0.85 3.18 -65.27 -0.21 0.64 16 16 H 0.12 1.99 7.01 -51.93 -0.36 1.62 16 17 C 0.13 1.83 5.95 -3.19 -0.02 1.82 16 18 N -0.48 -6.76 4.55 -214.03 -0.97 -7.74 16 19 C 0.03 0.50 5.15 -4.97 -0.03 0.47 16 20 C 0.45 9.83 7.43 -10.99 -0.08 9.75 16 21 O -0.56 -14.34 14.94 5.55 0.08 -14.25 16 22 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 23 C -0.30 -8.42 10.16 -14.93 -0.15 -8.58 16 24 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 26 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 27 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 28 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 34 H 0.08 0.58 5.46 -51.93 -0.28 0.29 16 35 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 36 H 0.05 0.25 6.03 -51.93 -0.31 -0.07 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.26 8.00 -51.93 -0.42 -0.15 16 39 H 0.09 0.52 5.22 -51.93 -0.27 0.25 16 40 H 0.08 0.77 7.93 -51.93 -0.41 0.35 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 43 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 44 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.09 1.35 7.10 -51.93 -0.37 0.98 16 47 H 0.09 1.19 7.96 -51.93 -0.41 0.77 16 48 H 0.05 0.74 6.98 -51.92 -0.36 0.38 16 49 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -35.06 381.89 -8.15 -43.21 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.86 Total: 9.04 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 0.00 Total: 9.54 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.65 Total: -53.76 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.68 Total: -28.13 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.06 -8.15 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267388740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.736 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds