Wall clock time and date at job start Wed Apr 1 2020 00:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46806 * 2 1 4 4 H 1.09006 * 109.46501 * 305.04226 * 3 2 1 5 5 O 1.42899 * 109.47277 * 65.04365 * 3 2 1 6 6 C 1.42897 * 114.00057 * 258.71736 * 5 3 2 7 7 C 1.50693 * 109.46924 * 185.04702 * 3 2 1 8 8 O 1.21283 * 119.99998 * 244.99802 * 7 3 2 9 9 N 1.34775 * 120.00309 * 64.99968 * 7 3 2 10 10 C 1.47821 * 120.39615 * 1.10822 * 9 7 3 11 11 C 1.53895 * 108.39841 * 132.95753 * 10 9 7 12 12 H 1.08998 * 112.60982 * 181.36248 * 11 10 9 13 13 C 1.54542 * 107.80755 * 305.68167 * 11 10 9 14 14 C 1.54257 * 105.02965 * 88.91016 * 13 11 10 15 15 C 1.54784 * 104.82861 * 0.08355 * 14 13 11 16 16 H 1.08993 * 112.21830 * 146.42529 * 15 14 13 17 17 C 1.47158 * 120.68395 * 180.02562 * 9 7 3 18 18 N 1.48729 * 104.36010 * 24.66027 * 15 14 13 19 19 C 1.46903 * 110.99918 * 78.40660 * 18 15 14 20 20 C 1.50699 * 109.47194 * 75.19982 * 19 18 15 21 21 O 1.21286 * 120.00395 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99699 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99901 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99979 * 359.97438 * 23 22 20 25 25 C 1.38955 * 119.99980 * 179.97438 * 23 22 20 26 26 N 1.31409 * 119.99775 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 119.99880 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47052 * 90.00050 * 27 25 23 29 29 H 1.48503 * 109.46642 * 209.99664 * 27 25 23 30 30 H 1.48495 * 109.47281 * 329.99633 * 27 25 23 31 31 H 1.08992 * 109.47227 * 55.07884 * 1 2 3 32 32 H 1.09007 * 109.46774 * 175.07300 * 1 2 3 33 33 H 1.08996 * 109.47200 * 295.07064 * 1 2 3 34 34 H 1.08997 * 109.47496 * 239.99730 * 2 1 3 35 35 H 1.09008 * 109.47134 * 119.99255 * 2 1 3 36 36 H 1.09000 * 109.47136 * 65.53516 * 6 5 3 37 37 H 1.09007 * 109.47235 * 185.53883 * 6 5 3 38 38 H 1.09005 * 109.46880 * 305.53487 * 6 5 3 39 39 H 1.08999 * 110.36586 * 12.73883 * 10 9 7 40 40 H 1.09006 * 108.77747 * 252.24007 * 10 9 7 41 41 H 1.09000 * 110.34593 * 207.82873 * 13 11 10 42 42 H 1.08998 * 110.34679 * 329.99123 * 13 11 10 43 43 H 1.09002 * 110.34504 * 118.92442 * 14 13 11 44 44 H 1.09002 * 110.34461 * 241.18740 * 14 13 11 45 45 H 1.09000 * 109.74700 * 107.75359 * 17 9 7 46 46 H 1.08999 * 109.74567 * 347.01792 * 17 9 7 47 47 H 1.08994 * 109.47260 * 195.20581 * 19 18 15 48 48 H 1.09008 * 109.46587 * 315.20161 * 19 18 15 49 49 H 0.97000 * 119.99979 * 359.97438 * 22 20 19 50 50 H 0.96995 * 120.00166 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9817 -0.8415 5 8 1.6628 2.0811 1.2215 6 6 0.5292 2.9428 1.1009 7 6 3.5417 1.4444 -0.1250 8 8 4.2255 1.8610 0.7860 9 7 4.1250 0.9832 -1.2490 10 6 3.2994 0.4962 -2.3744 11 6 3.8358 1.1191 -3.6754 12 1 3.2584 0.8226 -4.5511 13 6 3.8662 2.6527 -3.4877 14 6 5.2534 2.9544 -2.8842 15 6 5.9412 1.5732 -2.7622 16 1 7.0179 1.6335 -2.9204 17 6 5.5901 0.9776 -1.3869 18 7 5.2678 0.7338 -3.7889 19 6 5.7870 1.0267 -5.1315 20 6 7.1513 0.4061 -5.2890 21 8 7.6426 -0.2190 -4.3731 22 7 7.8254 0.5459 -6.4476 23 6 9.0664 -0.0191 -6.5911 24 1 9.5038 -0.5757 -5.7755 25 6 9.7612 0.1245 -7.7858 26 7 10.9508 -0.4166 -7.9231 27 14 9.0048 1.0880 -9.1962 28 1 9.3952 2.5164 -9.0853 29 1 9.4927 0.5403 -10.4874 30 1 7.5255 0.9729 -9.1370 31 1 -0.3633 0.5882 -0.8426 32 1 -0.3633 -1.0240 -0.0883 33 1 -0.3633 0.4354 0.9308 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 -0.3527 2.3508 0.8561 37 1 0.3667 3.4637 2.0446 38 1 0.7089 3.6712 0.3101 39 1 2.2572 0.7818 -2.2317 40 1 3.3808 -0.5896 -2.4251 41 1 3.7538 3.1545 -4.4488 42 1 3.0785 2.9664 -2.8028 43 1 5.8225 3.6045 -3.5487 44 1 5.1473 3.4147 -1.9018 45 1 5.9621 -0.0449 -1.3222 46 1 6.0364 1.5834 -0.5983 47 1 5.1113 0.6137 -5.8804 48 1 5.8612 2.1060 -5.2649 49 1 7.4323 1.0455 -7.1802 50 1 11.4361 -0.3160 -8.7569 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267388740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:23 Heat of formation + Delta-G solvation = -111.196283 kcal Electronic energy + Delta-G solvation = -31386.766663 eV Core-core repulsion = 27220.868140 eV Total energy + Delta-G solvation = -4165.898524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.25789 -40.64404 -39.69770 -38.54187 -36.12974 -35.76554 -34.22494 -33.71917 -32.53999 -32.31231 -29.81306 -28.86917 -27.42223 -26.57316 -25.60181 -25.17353 -23.03656 -21.67317 -21.51434 -21.19379 -20.29123 -19.64471 -18.65486 -17.90022 -17.63142 -17.20998 -16.81561 -16.74827 -16.53823 -16.02528 -15.86745 -15.50494 -15.38589 -15.03786 -14.97115 -14.87269 -14.65210 -14.34784 -14.21433 -13.98033 -13.60701 -13.57299 -13.41455 -13.25016 -12.94005 -12.91186 -12.78486 -12.41137 -12.39165 -12.28060 -12.18381 -12.01889 -11.96265 -11.88190 -11.70192 -11.46742 -11.39930 -11.01385 -10.45250 -10.32009 -10.21479 -9.83615 -9.35385 -8.39134 -5.99712 1.30439 1.36785 1.45549 1.51085 1.71166 2.01409 2.24656 2.60175 2.88055 3.15555 3.18107 3.38084 3.62564 3.75253 3.80735 3.86281 3.87852 3.93850 4.14853 4.23897 4.30557 4.34330 4.36983 4.42376 4.46483 4.52761 4.54275 4.60714 4.63574 4.66318 4.72793 4.82383 4.83297 4.85694 4.88412 4.95837 5.09578 5.11364 5.19115 5.23248 5.39967 5.41859 5.55055 5.80569 5.91541 6.02229 6.10244 6.40954 6.62745 6.92061 7.10581 7.43852 8.02499 8.78824 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.002496 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.442406 B =11213.326328 C =11352.690734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.082 3.918 4 H 0.120 0.880 5 O -0.392 6.392 6 C 0.018 3.982 7 C 0.502 3.498 8 O -0.582 6.582 9 N -0.596 5.596 10 C 0.112 3.888 11 C 0.048 3.952 12 H 0.145 0.855 13 C -0.136 4.136 14 C -0.144 4.144 15 C 0.059 3.941 16 H 0.072 0.928 17 C 0.137 3.863 18 N -0.499 5.499 19 C 0.047 3.953 20 C 0.452 3.548 21 O -0.608 6.608 22 N -0.595 5.595 23 C -0.324 4.324 24 H 0.052 0.948 25 C -0.019 4.019 26 N -0.938 5.938 27 Si 0.966 3.034 28 H -0.260 1.260 29 H -0.277 1.277 30 H -0.226 1.226 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.128 0.872 48 H 0.080 0.920 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.454 8.814 6.633 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 H 0.137 0.863 5 O -0.311 6.311 6 C -0.078 4.078 7 C 0.291 3.709 8 O -0.461 6.461 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.061 4.061 12 H 0.162 0.838 13 C -0.175 4.175 14 C -0.183 4.183 15 C -0.051 4.051 16 H 0.090 0.910 17 C 0.014 3.986 18 N -0.222 5.222 19 C -0.084 4.084 20 C 0.240 3.760 21 O -0.491 6.491 22 N -0.237 5.237 23 C -0.454 4.454 24 H 0.070 0.930 25 C -0.217 4.217 26 N -0.579 5.579 27 Si 0.786 3.214 28 H -0.184 1.184 29 H -0.202 1.202 30 H -0.150 1.150 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.146 0.854 48 H 0.098 0.902 49 H 0.225 0.775 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.413 7.930 7.886 31.468 hybrid contribution 1.050 1.045 -0.863 1.714 sum -28.363 8.974 7.023 30.567 Atomic orbital electron populations 1.21821 0.92663 1.03369 1.02706 1.22107 0.98773 0.93346 1.03758 1.22126 0.89282 0.96823 0.89711 0.86256 1.88005 1.49762 1.62546 1.30740 1.23226 0.87761 0.93265 1.03545 1.21369 0.91627 0.76444 0.81456 1.90681 1.66360 1.48442 1.40615 1.48300 1.06469 1.62281 1.15915 1.22552 0.95130 0.99881 0.83365 1.23773 0.89185 0.93653 0.99468 0.83764 1.22846 0.96018 0.96515 1.02148 1.22846 0.97509 0.96713 1.01254 1.23241 0.98463 0.91417 0.91961 0.91000 1.21492 0.80427 1.00703 0.96011 1.64984 1.03375 1.51488 1.02357 1.21930 0.93053 1.00071 0.93367 1.20986 0.88705 0.83967 0.82392 1.90555 1.71184 1.45647 1.41748 1.42042 1.16637 1.50362 1.14653 1.18967 0.93567 1.31874 1.00950 0.92956 1.26143 0.95960 0.98621 1.00966 1.69814 1.14104 1.45828 1.28157 0.85353 0.80504 0.78614 0.76959 1.18428 1.20235 1.14955 0.90380 0.91161 0.92629 0.88433 0.92748 0.91236 0.89074 0.92810 0.85490 0.89949 0.89273 0.89955 0.91466 0.92226 0.92419 0.90972 0.85370 0.90244 0.77546 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.90 71.98 0.64 -0.46 16 2 C -0.14 -1.82 5.23 30.60 0.16 -1.66 16 3 C 0.08 1.35 1.85 29.85 0.06 1.41 16 4 H 0.12 1.09 6.74 -2.38 -0.02 1.08 16 5 O -0.39 -8.22 9.66 -129.99 -1.26 -9.47 16 6 C 0.02 0.20 10.48 113.37 1.19 1.39 16 7 C 0.50 12.84 7.11 87.66 0.62 13.46 16 8 O -0.58 -21.21 15.97 15.95 0.25 -20.95 16 9 N -0.60 -13.55 2.32 -813.20 -1.89 -15.44 16 10 C 0.11 1.60 4.22 86.43 0.36 1.96 16 11 C 0.05 0.72 3.67 45.39 0.17 0.88 16 12 H 0.14 1.25 7.97 -2.39 -0.02 1.23 16 13 C -0.14 -1.93 5.70 31.54 0.18 -1.75 16 14 C -0.14 -3.21 5.50 31.63 0.17 -3.03 16 15 C 0.06 1.73 3.18 45.49 0.14 1.87 16 16 H 0.07 2.71 7.01 -2.39 -0.02 2.69 16 17 C 0.14 4.11 5.95 86.57 0.51 4.63 16 18 N -0.50 -13.22 4.55 -831.07 -3.78 -17.00 16 19 C 0.05 1.30 5.15 85.56 0.44 1.74 16 20 C 0.45 19.66 7.43 87.66 0.65 20.31 16 21 O -0.61 -33.12 14.94 -3.05 -0.05 -33.16 16 22 N -0.59 -27.31 5.09 -306.99 -1.56 -28.87 16 23 C -0.32 -18.87 10.16 84.04 0.85 -18.02 16 24 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 25 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 26 N -0.94 -56.78 13.96 21.66 0.30 -56.48 16 27 Si 0.97 38.18 27.74 68.60 1.90 40.08 16 28 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 29 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 30 H -0.23 -7.31 6.52 99.48 0.65 -6.67 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.05 0.50 6.54 -2.39 -0.02 0.48 16 34 H 0.10 0.98 5.46 -2.39 -0.01 0.96 16 35 H 0.05 0.97 8.14 -2.38 -0.02 0.96 16 36 H 0.07 0.46 6.03 -2.39 -0.01 0.45 16 37 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.05 0.48 8.00 -2.38 -0.02 0.46 16 39 H 0.13 0.79 5.22 -2.39 -0.01 0.77 16 40 H 0.08 1.25 7.93 -2.38 -0.02 1.23 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.94 7.84 -2.39 -0.02 0.92 16 43 H 0.07 1.48 7.94 -2.39 -0.02 1.47 16 44 H 0.06 1.46 7.86 -2.39 -0.02 1.45 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 2.40 7.10 -2.39 -0.02 2.38 16 47 H 0.13 2.63 7.96 -2.39 -0.02 2.61 16 48 H 0.08 1.84 6.98 -2.38 -0.02 1.83 16 49 H 0.39 14.57 5.76 -92.71 -0.53 14.04 16 50 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -88.33 381.89 0.91 -87.42 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.37 Total: 31.73 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.63 Total: 22.16 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -6.94 Total: -117.80 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -1.05 Total: -63.59 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -88.33 0.91 -87.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267388740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.778 kcal (2) G-P(sol) polarization free energy of solvation -88.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds