Wall clock time and date at job start Tue Mar 31 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 C 1.53002 * 109.46876 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47265 * 55.75431 * 4 3 2 6 6 O 1.42894 * 109.47147 * 295.75358 * 4 3 2 7 7 C 1.42902 * 113.99740 * 150.00081 * 6 4 3 8 8 C 1.50697 * 109.46842 * 175.75122 * 4 3 2 9 9 O 1.21287 * 119.99852 * 110.58100 * 8 4 3 10 10 N 1.34772 * 120.00428 * 290.57769 * 8 4 3 11 11 C 1.47863 * 126.92675 * 355.07629 * 10 8 4 12 12 C 1.56020 * 105.11413 * 181.89751 * 11 10 8 13 13 H 1.09001 * 116.25961 * 158.84538 * 12 11 10 14 14 C 1.57086 * 99.59902 * 32.80354 * 12 11 10 15 15 C 1.49285 * 126.92828 * 175.02799 * 10 8 4 16 16 H 1.08997 * 116.12377 * 16.89685 * 15 10 8 17 17 C 1.56013 * 104.12906 * 247.78269 * 15 10 8 18 18 N 1.49707 * 104.08526 * 287.95300 * 12 11 10 19 19 C 1.46896 * 110.99685 * 306.12151 * 18 12 11 20 20 C 1.50696 * 109.47441 * 301.75263 * 19 18 12 21 21 O 1.21286 * 119.99899 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00048 * 179.97438 * 20 19 18 23 23 C 1.37103 * 120.00105 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99814 * 0.02562 * 23 22 20 25 25 C 1.38948 * 120.00100 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99983 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99807 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47387 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47288 * 120.00183 * 27 25 23 30 30 H 1.48504 * 109.46894 * 239.99918 * 27 25 23 31 31 H 1.09001 * 109.47664 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47250 * 300.00325 * 1 2 3 33 33 H 1.08998 * 109.47187 * 60.00058 * 1 2 3 34 34 H 1.08991 * 109.47015 * 239.99602 * 2 1 3 35 35 H 1.09000 * 109.46751 * 119.99648 * 2 1 3 36 36 H 1.09000 * 109.47286 * 59.99697 * 3 2 1 37 37 H 1.09000 * 109.46984 * 299.99506 * 3 2 1 38 38 H 1.09000 * 109.46880 * 180.02562 * 7 6 4 39 39 H 1.09004 * 109.47137 * 299.99869 * 7 6 4 40 40 H 1.09002 * 109.47238 * 59.99917 * 7 6 4 41 41 H 1.09007 * 110.31163 * 300.80618 * 11 10 8 42 42 H 1.08999 * 110.31563 * 62.88869 * 11 10 8 43 43 H 1.09000 * 113.08174 * 191.53423 * 14 12 11 44 44 H 1.09002 * 111.63552 * 64.12866 * 14 12 11 45 45 H 1.08998 * 110.31915 * 46.85300 * 17 15 10 46 46 H 1.09001 * 110.31784 * 169.05774 * 17 15 10 47 47 H 1.09008 * 109.47247 * 61.75351 * 19 18 12 48 48 H 1.08997 * 109.47280 * 181.75063 * 19 18 12 49 49 H 0.97003 * 120.00337 * 0.02562 * 22 20 19 50 50 H 0.97004 * 120.00004 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8640 -0.8486 6 8 4.0458 0.8572 1.2143 7 6 5.3055 0.1949 1.0854 8 6 4.0724 2.8593 -0.1046 9 8 4.6223 3.3797 0.8429 10 7 3.9108 3.5482 -1.2516 11 6 3.3589 3.0371 -2.5246 12 6 3.4493 4.2368 -3.5180 13 1 3.4329 3.9868 -4.5789 14 6 4.7549 4.9248 -2.9797 15 6 4.2519 4.9814 -1.4928 16 1 4.9242 5.4430 -0.7696 17 6 2.8680 5.6747 -1.6875 18 7 2.3884 5.1815 -3.0459 19 6 1.0874 4.5063 -2.9493 20 6 0.7146 3.9393 -4.2949 21 8 1.4596 4.0830 -5.2410 22 7 -0.4463 3.2715 -4.4466 23 6 -0.7857 2.7561 -5.6708 24 1 -0.1227 2.8848 -6.5136 25 6 -1.9827 2.0681 -5.8274 26 7 -2.7897 1.9119 -4.8021 27 14 -2.4448 1.3652 -7.4952 28 1 -1.3748 1.6758 -8.4770 29 1 -2.6040 -0.1070 -7.3851 30 1 -3.7233 1.9687 -7.9497 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 5.5968 -0.2225 2.0493 39 1 5.2207 -0.6079 0.3529 40 1 6.0597 0.9095 0.7556 41 1 3.9559 2.2000 -2.8869 42 1 2.3212 2.7314 -2.3916 43 1 4.9194 5.9170 -3.3999 44 1 5.6266 4.2811 -3.0983 45 1 2.1744 5.3612 -0.9073 46 1 2.9832 6.7586 -1.6797 47 1 1.1502 3.6990 -2.2196 48 1 0.3287 5.2226 -2.6341 49 1 -1.0420 3.1562 -3.6898 50 1 -3.6256 1.4319 -4.9114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267711423.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:04 Heat of formation + Delta-G solvation = -71.766851 kcal Electronic energy + Delta-G solvation = -31909.459995 eV Core-core repulsion = 27745.271259 eV Total energy + Delta-G solvation = -4164.188735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25267 -39.41228 -38.02515 -37.20358 -34.94920 -34.18277 -33.50204 -31.58915 -31.13970 -29.69507 -29.60900 -26.64857 -26.49197 -25.47481 -24.51045 -23.82927 -21.38387 -21.21740 -20.62358 -19.38148 -18.77527 -17.89848 -17.69756 -16.93226 -16.38516 -16.22753 -15.64730 -15.48939 -15.28188 -14.80568 -14.59310 -14.34266 -14.07589 -13.90477 -13.63042 -13.47682 -13.24984 -13.06165 -12.74434 -12.49912 -12.34332 -12.22061 -12.06526 -11.83279 -11.62547 -11.55852 -11.44920 -11.41158 -11.28952 -11.16082 -11.10339 -11.07292 -10.89847 -10.67019 -10.61083 -10.39603 -10.29305 -9.57620 -9.36926 -8.75370 -8.45416 -8.07571 -7.98289 -6.48813 -3.89871 2.47230 2.68119 3.10940 3.22829 3.28913 3.56006 3.76652 3.82559 4.14490 4.21692 4.47738 4.53719 4.64177 4.69119 4.72006 4.94878 4.98498 5.02141 5.06733 5.13217 5.18022 5.21523 5.26914 5.38118 5.42489 5.47967 5.52893 5.59304 5.63298 5.71834 5.75697 5.78543 5.83154 5.85414 5.87054 5.98881 6.08363 6.12845 6.15937 6.17926 6.34861 6.35502 6.81455 6.84119 7.08915 7.42694 7.48671 7.98207 8.05860 8.52654 9.10431 9.45481 9.96087 10.68537 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.003927 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.010079 B = 7128.889469 C = 8918.107724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.113 4.113 4 C 0.079 3.921 5 H 0.083 0.917 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.619 5.619 11 C 0.050 3.950 12 C 0.071 3.929 13 H 0.157 0.843 14 C -0.136 4.136 15 C 0.108 3.892 16 H 0.123 0.877 17 C 0.023 3.977 18 N -0.490 5.490 19 C 0.029 3.971 20 C 0.442 3.558 21 O -0.580 6.580 22 N -0.560 5.560 23 C -0.300 4.300 24 H 0.104 0.896 25 C 0.025 3.975 26 N -0.899 5.899 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.413 -1.429 9.625 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.151 4.151 4 C 0.018 3.982 5 H 0.101 0.899 6 O -0.272 6.272 7 C -0.067 4.067 8 C 0.297 3.703 9 O -0.408 6.408 10 N -0.356 5.356 11 C -0.073 4.073 12 C -0.037 4.037 13 H 0.174 0.826 14 C -0.174 4.174 15 C 0.005 3.995 16 H 0.141 0.859 17 C -0.105 4.105 18 N -0.214 5.214 19 C -0.102 4.102 20 C 0.228 3.772 21 O -0.465 6.465 22 N -0.196 5.196 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.177 4.177 26 N -0.540 5.540 27 Si 0.755 3.245 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.816 -0.793 9.428 15.137 hybrid contribution -0.586 -1.228 0.066 1.362 sum 11.230 -2.021 9.494 14.844 Atomic orbital electron populations 1.21772 0.95015 1.01979 1.02391 1.21451 0.96485 0.95263 1.02335 1.21727 0.90390 0.99276 1.03704 1.22072 0.96531 0.90494 0.89122 0.89912 1.87991 1.36609 1.71663 1.30955 1.22852 0.85506 0.95721 1.02666 1.21104 0.79128 0.88708 0.81342 1.90690 1.42679 1.70473 1.36961 1.49435 1.62877 1.12211 1.11059 1.23567 0.99953 0.99443 0.84341 1.24910 0.90059 0.88619 1.00123 0.82609 1.23977 0.97342 1.02340 0.93766 1.24028 0.96777 0.81400 0.97262 0.85904 1.24417 0.94773 1.00522 0.90810 1.65790 1.00842 1.34180 1.20619 1.22209 0.92587 0.98162 0.97265 1.19616 0.84018 0.84143 0.89452 1.90459 1.51835 1.62746 1.41473 1.41865 1.17664 1.47896 1.12176 1.19736 1.03925 1.30759 0.88483 0.87790 1.25252 0.95832 0.97564 0.99094 1.69614 1.11833 1.42127 1.30382 0.85829 0.78608 0.78390 0.81706 1.19193 1.20762 1.20728 0.92577 0.92788 0.91877 0.92002 0.91280 0.90441 0.89967 0.89233 0.93886 0.93960 0.91031 0.89597 0.88516 0.90198 0.92030 0.88941 0.93056 0.89160 0.77510 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.31 5.83 -26.73 -0.16 -1.47 16 3 C -0.11 -1.37 4.85 -26.73 -0.13 -1.50 16 4 C 0.08 1.00 1.95 -27.88 -0.05 0.94 16 5 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 6 O -0.36 -4.70 9.40 -54.96 -0.52 -5.22 16 7 C 0.03 0.29 10.81 101.05 1.09 1.39 16 8 C 0.51 7.41 7.17 -10.99 -0.08 7.33 16 9 O -0.53 -9.46 16.87 -14.18 -0.24 -9.70 16 10 N -0.62 -8.13 2.93 -156.80 -0.46 -8.59 16 11 C 0.05 0.67 5.24 -1.68 -0.01 0.66 16 12 C 0.07 1.02 4.12 -62.31 -0.26 0.77 16 13 H 0.16 2.64 6.33 -51.93 -0.33 2.31 16 14 C -0.14 -1.56 6.83 -22.31 -0.15 -1.71 16 15 C 0.11 1.31 5.18 -62.56 -0.32 0.99 16 16 H 0.12 1.44 8.04 -51.93 -0.42 1.02 16 17 C 0.02 0.29 6.50 0.85 0.01 0.29 16 18 N -0.49 -7.50 5.26 -214.62 -1.13 -8.63 16 19 C 0.03 0.49 4.79 -4.98 -0.02 0.47 16 20 C 0.44 9.52 7.43 -10.99 -0.08 9.43 16 21 O -0.58 -14.08 13.55 5.55 0.08 -14.01 16 22 N -0.56 -13.17 5.29 -10.96 -0.06 -13.22 16 23 C -0.30 -7.84 9.68 -14.93 -0.14 -7.99 16 24 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16 25 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 26 N -0.90 -23.30 13.05 55.50 0.72 -22.57 16 27 Si 0.93 20.15 29.55 -169.99 -5.02 15.12 16 28 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 30 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.76 7.80 -51.93 -0.41 0.35 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.02 5.45 -51.93 -0.28 0.74 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.23 3.28 -51.93 -0.17 1.06 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.81 7.71 -51.93 -0.40 0.41 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.79 5.33 -51.92 -0.28 0.51 16 48 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 49 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 50 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -30.86 393.78 -8.74 -39.60 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.01 Total: 12.56 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.04 Total: 8.73 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.92 Total: -53.02 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.68 Total: -28.93 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.86 -8.74 -39.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267711423.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.163 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds