Wall clock time and date at job start Tue Mar 31 2020 23:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 H 1.08998 * 110.35466 * 52.85719 * 3 2 1 5 5 O 1.43645 * 110.30835 * 290.71051 * 3 2 1 6 6 C 1.43241 * 109.97123 * 216.65953 * 5 3 2 7 7 C 1.54429 * 107.60780 * 1.74340 * 6 5 3 8 8 C 1.54952 * 110.31085 * 175.00070 * 3 2 1 9 9 H 1.09004 * 111.12114 * 37.39586 * 8 3 2 10 10 C 1.50699 * 111.12463 * 273.28020 * 8 3 2 11 11 O 1.21288 * 119.99671 * 3.49208 * 10 8 3 12 12 N 1.34771 * 120.00193 * 183.49587 * 10 8 3 13 13 C 1.46496 * 120.00128 * 179.97438 * 12 10 8 14 14 H 1.09003 * 110.63013 * 31.89976 * 13 12 10 15 15 C 1.55140 * 110.86135 * 268.68699 * 13 12 10 16 16 C 1.54907 * 101.65799 * 205.89519 * 15 13 12 17 17 N 1.47845 * 104.79145 * 37.06783 * 16 15 13 18 18 C 1.46906 * 110.99647 * 213.63735 * 17 16 15 19 19 C 1.50703 * 109.47109 * 290.84491 * 18 17 16 20 20 O 1.21296 * 119.99996 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99978 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99848 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00405 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99710 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00111 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99871 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47117 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46892 * 120.00408 * 26 24 22 29 29 H 1.48498 * 109.47545 * 240.00361 * 26 24 22 30 30 C 1.47441 * 108.57385 * 335.90448 * 17 16 15 31 31 H 1.09001 * 109.46821 * 60.00170 * 1 2 3 32 32 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47314 * 300.00414 * 1 2 3 34 34 H 1.09004 * 109.47314 * 239.99586 * 2 1 3 35 35 H 1.09001 * 109.47346 * 119.99814 * 2 1 3 36 36 H 1.08994 * 109.83114 * 121.22645 * 6 5 3 37 37 H 1.09000 * 109.82615 * 242.10666 * 6 5 3 38 38 H 1.08990 * 110.84236 * 263.12977 * 7 6 5 39 39 H 1.09009 * 110.88794 * 139.49201 * 7 6 5 40 40 H 0.97006 * 119.99985 * 0.02562 * 12 10 8 41 41 H 1.09000 * 110.98645 * 323.98800 * 15 13 12 42 42 H 1.08998 * 110.99335 * 87.76046 * 15 13 12 43 43 H 1.09000 * 110.36912 * 278.24381 * 16 15 13 44 44 H 1.08996 * 110.37416 * 155.89519 * 16 15 13 45 45 H 1.08992 * 109.47459 * 50.84409 * 18 17 16 46 46 H 1.09004 * 109.47040 * 170.84560 * 18 17 16 47 47 H 0.97002 * 119.99767 * 359.97438 * 21 19 18 48 48 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 49 49 H 1.09000 * 109.88870 * 120.39556 * 30 17 16 50 50 H 1.08991 * 109.89326 * 241.42514 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5847 2.0056 0.8146 5 8 1.7570 2.0713 -1.2601 6 6 2.8321 2.9456 -1.6229 7 6 3.9126 2.8379 -0.5249 8 6 3.5841 1.4669 0.1266 9 1 4.0371 0.6478 -0.4320 10 6 4.0112 1.4359 1.5715 11 8 3.1788 1.3334 2.4478 12 7 5.3178 1.5222 1.8901 13 6 5.7329 1.4926 3.2947 14 1 5.0549 0.8737 3.8825 15 6 5.8104 2.9279 3.8782 16 6 6.8483 2.7484 5.0142 17 7 7.8358 1.7893 4.4750 18 6 8.3702 0.9296 5.5397 19 6 9.2340 1.7507 6.4622 20 8 9.3888 2.9355 6.2535 21 7 9.8345 1.1685 7.5190 22 6 10.6199 1.9155 8.3584 23 1 10.7578 2.9704 8.1727 24 6 11.2386 1.3153 9.4483 25 7 11.0713 0.0316 9.6741 26 14 12.3093 2.3330 10.5917 27 1 12.3360 3.7415 10.1217 28 1 11.7528 2.2811 11.9675 29 1 13.6897 1.7856 10.5951 30 6 7.1848 0.9858 3.4241 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2493 2.6402 -2.5825 37 1 2.4689 3.9712 -1.6874 38 1 3.8111 3.6459 0.1996 39 1 4.9113 2.8304 -0.9617 40 1 5.9835 1.6046 1.1893 41 1 6.1690 3.6347 3.1299 42 1 4.8450 3.2403 4.2764 43 1 6.3696 2.3401 5.9043 44 1 7.3288 3.6995 5.2429 45 1 7.5454 0.4958 6.1048 46 1 8.9669 0.1319 5.0974 47 1 9.7104 0.2210 7.6861 48 1 11.5034 -0.3874 10.4347 49 1 7.7094 1.1180 2.4778 50 1 7.1888 -0.0670 3.7062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269151127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:22 Heat of formation + Delta-G solvation = -118.321590 kcal Electronic energy + Delta-G solvation = -29504.707761 eV Core-core repulsion = 25338.500261 eV Total energy + Delta-G solvation = -4166.207500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.92759 -39.56548 -38.60601 -37.47739 -34.68715 -33.90057 -33.81215 -32.85238 -31.34493 -30.77730 -28.96881 -28.43765 -26.58283 -24.52255 -24.05799 -23.04311 -21.45977 -21.18381 -20.93130 -20.44834 -19.22687 -18.13395 -17.87090 -16.93302 -16.67658 -15.95600 -15.84323 -15.46123 -15.28315 -15.02838 -14.54907 -14.48567 -14.27401 -14.01306 -13.81739 -13.73460 -13.50931 -13.38512 -13.06192 -12.96128 -12.71242 -12.38490 -12.14186 -11.96593 -11.88107 -11.74326 -11.55873 -11.49758 -11.38696 -11.17756 -11.15914 -11.05297 -10.99607 -10.77407 -10.34679 -10.22905 -10.15533 -9.85477 -9.51394 -9.31118 -8.48524 -7.99115 -7.92649 -6.41974 -3.82684 2.25250 2.73646 3.15985 3.26554 3.33475 3.34071 3.89138 3.90710 3.99983 4.16427 4.20424 4.27905 4.46977 4.58079 4.68610 4.70128 4.77399 4.83777 4.90959 4.98013 5.09217 5.13924 5.23479 5.24569 5.28236 5.32174 5.34991 5.43272 5.53336 5.55878 5.58901 5.68864 5.71673 5.77312 5.83134 5.88061 5.91912 6.02060 6.06286 6.25612 6.27989 6.42722 6.61006 7.12120 7.15744 7.20898 7.55189 7.87545 8.06194 8.61642 9.18191 9.54380 10.06180 10.75934 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.001748 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.400403 B =16015.910456 C =16421.522422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.102 3.898 4 H 0.086 0.914 5 O -0.377 6.377 6 C 0.053 3.947 7 C -0.146 4.146 8 C -0.146 4.146 9 H 0.114 0.886 10 C 0.527 3.473 11 O -0.533 6.533 12 N -0.715 5.715 13 C 0.122 3.878 14 H 0.097 0.903 15 C -0.139 4.139 16 C 0.054 3.946 17 N -0.501 5.501 18 C 0.039 3.961 19 C 0.445 3.555 20 O -0.577 6.577 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 C 0.037 3.963 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.402 0.598 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.080 0.920 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 -0.848 -22.083 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.044 3.956 4 H 0.104 0.896 5 O -0.297 6.297 6 C -0.024 4.024 7 C -0.184 4.184 8 C -0.168 4.168 9 H 0.132 0.868 10 C 0.312 3.688 11 O -0.409 6.409 12 N -0.366 5.366 13 C 0.016 3.984 14 H 0.115 0.885 15 C -0.178 4.178 16 C -0.074 4.074 17 N -0.225 5.225 18 C -0.093 4.093 19 C 0.230 3.770 20 O -0.461 6.461 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.092 4.092 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.237 0.763 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.343 -0.008 -21.748 27.204 hybrid contribution 0.547 -0.626 0.896 1.222 sum -15.797 -0.633 -20.852 26.167 Atomic orbital electron populations 1.21691 0.95001 1.01583 1.02260 1.21648 0.97201 0.94289 1.02596 1.22859 0.91059 0.94955 0.86704 0.89635 1.88440 1.42454 1.60528 1.38237 1.23094 0.87010 0.94819 0.97449 1.23134 1.00783 0.95934 0.98531 1.23088 0.98965 1.00391 0.94323 0.86826 1.20127 0.82526 0.75852 0.90259 1.90736 1.51332 1.48802 1.50024 1.45962 1.07506 1.74571 1.08580 1.22306 0.96438 0.97856 0.81809 0.88468 1.23140 0.99677 0.96222 0.98791 1.23013 0.90703 0.98622 0.95048 1.63291 1.33182 1.15163 1.10903 1.22151 0.98542 0.95456 0.93124 1.19700 0.85134 0.88613 0.83574 1.90509 1.65575 1.15823 1.74183 1.41867 1.43267 1.11688 1.23452 1.19744 1.23367 0.95014 1.04575 0.87866 1.25262 0.98513 0.96018 0.98237 1.69617 1.44617 1.09935 1.30216 0.85802 0.79201 0.79849 0.79503 1.19231 1.20796 1.20763 1.23081 0.91520 0.96988 0.97575 0.92184 0.92739 0.92603 0.91432 0.90374 0.90957 0.91042 0.89807 0.89020 0.76327 0.90426 0.90609 0.93646 0.88413 0.93164 0.89308 0.77530 0.91946 0.90178 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.85 37.16 0.37 -0.81 16 2 C -0.12 -0.98 5.66 -26.73 -0.15 -1.14 16 3 C 0.10 0.90 2.52 -25.70 -0.06 0.83 16 4 H 0.09 0.91 7.43 -51.93 -0.39 0.53 16 5 O -0.38 -3.43 10.81 -35.23 -0.38 -3.81 16 6 C 0.05 0.33 7.80 37.91 0.30 0.63 16 7 C -0.15 -0.81 6.49 -24.76 -0.16 -0.97 16 8 C -0.15 -1.04 2.90 -89.52 -0.26 -1.30 16 9 H 0.11 0.62 8.06 -51.93 -0.42 0.20 16 10 C 0.53 5.09 7.15 -10.99 -0.08 5.02 16 11 O -0.53 -7.22 15.40 5.55 0.09 -7.13 16 12 N -0.71 -6.01 5.18 -52.04 -0.27 -6.28 16 13 C 0.12 1.32 3.30 -66.11 -0.22 1.10 16 14 H 0.10 1.20 7.55 -51.93 -0.39 0.81 16 15 C -0.14 -1.69 6.77 -24.59 -0.17 -1.85 16 16 C 0.05 0.84 5.74 -2.30 -0.01 0.82 16 17 N -0.50 -7.93 4.86 -232.69 -1.13 -9.06 16 18 C 0.04 0.68 5.05 -4.97 -0.03 0.65 16 19 C 0.44 10.37 7.58 -10.98 -0.08 10.29 16 20 O -0.58 -15.40 14.61 5.54 0.08 -15.32 16 21 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 26 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 C 0.04 0.43 6.61 -2.83 -0.02 0.41 16 31 H 0.06 0.49 7.99 -51.93 -0.42 0.07 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 39 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.40 2.34 8.37 -40.82 -0.34 2.00 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.72 7.62 -51.93 -0.40 0.33 16 44 H 0.10 1.77 7.37 -51.93 -0.38 1.39 16 45 H 0.05 0.80 7.85 -51.93 -0.41 0.40 16 46 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 50 H 0.06 0.67 7.54 -51.93 -0.39 0.27 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -33.22 402.89 -9.12 -42.35 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.40 Total: 9.53 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.82 Total: 5.75 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.73 Total: -53.42 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.21 Total: -26.26 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.22 -9.12 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269151127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.976 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds