Wall clock time and date at job start Tue Mar 31 2020 23:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47353 * 2 1 4 4 H 1.08998 * 110.35466 * 52.85719 * 3 2 1 5 5 O 1.43645 * 110.30835 * 290.71051 * 3 2 1 6 6 C 1.43241 * 109.97123 * 216.65953 * 5 3 2 7 7 C 1.54429 * 107.60780 * 1.74340 * 6 5 3 8 8 C 1.54952 * 110.31085 * 175.00070 * 3 2 1 9 9 H 1.09004 * 111.12114 * 37.39586 * 8 3 2 10 10 C 1.50699 * 111.12463 * 273.28020 * 8 3 2 11 11 O 1.21288 * 119.99671 * 3.49208 * 10 8 3 12 12 N 1.34771 * 120.00193 * 183.49587 * 10 8 3 13 13 C 1.46496 * 120.00128 * 179.97438 * 12 10 8 14 14 H 1.09003 * 110.63013 * 31.89976 * 13 12 10 15 15 C 1.55140 * 110.86135 * 268.68699 * 13 12 10 16 16 C 1.54907 * 101.65799 * 205.89519 * 15 13 12 17 17 N 1.47845 * 104.79145 * 37.06783 * 16 15 13 18 18 C 1.46906 * 110.99647 * 213.63735 * 17 16 15 19 19 C 1.50703 * 109.47109 * 290.84491 * 18 17 16 20 20 O 1.21296 * 119.99996 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99978 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99848 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00405 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99710 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00111 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99871 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47117 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46892 * 120.00408 * 26 24 22 29 29 H 1.48498 * 109.47545 * 240.00361 * 26 24 22 30 30 C 1.47441 * 108.57385 * 335.90448 * 17 16 15 31 31 H 1.09001 * 109.46821 * 60.00170 * 1 2 3 32 32 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47314 * 300.00414 * 1 2 3 34 34 H 1.09004 * 109.47314 * 239.99586 * 2 1 3 35 35 H 1.09001 * 109.47346 * 119.99814 * 2 1 3 36 36 H 1.08994 * 109.83114 * 121.22645 * 6 5 3 37 37 H 1.09000 * 109.82615 * 242.10666 * 6 5 3 38 38 H 1.08990 * 110.84236 * 263.12977 * 7 6 5 39 39 H 1.09009 * 110.88794 * 139.49201 * 7 6 5 40 40 H 0.97006 * 119.99985 * 0.02562 * 12 10 8 41 41 H 1.09000 * 110.98645 * 323.98800 * 15 13 12 42 42 H 1.08998 * 110.99335 * 87.76046 * 15 13 12 43 43 H 1.09000 * 110.36912 * 278.24381 * 16 15 13 44 44 H 1.08996 * 110.37416 * 155.89519 * 16 15 13 45 45 H 1.08992 * 109.47459 * 50.84409 * 18 17 16 46 46 H 1.09004 * 109.47040 * 170.84560 * 18 17 16 47 47 H 0.97002 * 119.99767 * 359.97438 * 21 19 18 48 48 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 49 49 H 1.09000 * 109.88870 * 120.39556 * 30 17 16 50 50 H 1.08991 * 109.89326 * 241.42514 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5847 2.0056 0.8146 5 8 1.7570 2.0713 -1.2601 6 6 2.8321 2.9456 -1.6229 7 6 3.9126 2.8379 -0.5249 8 6 3.5841 1.4669 0.1266 9 1 4.0371 0.6478 -0.4320 10 6 4.0112 1.4359 1.5715 11 8 3.1788 1.3334 2.4478 12 7 5.3178 1.5222 1.8901 13 6 5.7329 1.4926 3.2947 14 1 5.0549 0.8737 3.8825 15 6 5.8104 2.9279 3.8782 16 6 6.8483 2.7484 5.0142 17 7 7.8358 1.7893 4.4750 18 6 8.3702 0.9296 5.5397 19 6 9.2340 1.7507 6.4622 20 8 9.3888 2.9355 6.2535 21 7 9.8345 1.1685 7.5190 22 6 10.6199 1.9155 8.3584 23 1 10.7578 2.9704 8.1727 24 6 11.2386 1.3153 9.4483 25 7 11.0713 0.0316 9.6741 26 14 12.3093 2.3330 10.5917 27 1 12.3360 3.7415 10.1217 28 1 11.7528 2.2811 11.9675 29 1 13.6897 1.7856 10.5951 30 6 7.1848 0.9858 3.4241 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2493 2.6402 -2.5825 37 1 2.4689 3.9712 -1.6874 38 1 3.8111 3.6459 0.1996 39 1 4.9113 2.8304 -0.9617 40 1 5.9835 1.6046 1.1893 41 1 6.1690 3.6347 3.1299 42 1 4.8450 3.2403 4.2764 43 1 6.3696 2.3401 5.9043 44 1 7.3288 3.6995 5.2429 45 1 7.5454 0.4958 6.1048 46 1 8.9669 0.1319 5.0974 47 1 9.7104 0.2210 7.6861 48 1 11.5034 -0.3874 10.4347 49 1 7.7094 1.1180 2.4778 50 1 7.1888 -0.0670 3.7062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269151127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:21 Heat of formation + Delta-G solvation = -144.009319 kcal Electronic energy + Delta-G solvation = -29505.821664 eV Core-core repulsion = 25338.500261 eV Total energy + Delta-G solvation = -4167.321404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.66176 -40.68496 -39.78189 -38.85543 -36.02399 -35.45870 -34.49812 -33.55648 -33.25650 -31.97517 -29.75259 -29.29532 -28.08098 -26.07522 -24.97249 -23.63304 -22.47111 -22.10431 -21.72832 -21.21299 -20.99522 -19.88557 -18.81853 -17.91918 -17.56936 -17.26580 -16.91011 -16.59589 -16.26690 -16.05131 -15.88218 -15.77193 -15.58196 -15.11084 -14.87873 -14.55711 -14.41192 -14.33809 -14.20511 -14.00662 -13.76400 -13.47225 -13.31355 -13.24367 -13.00200 -12.74191 -12.71719 -12.66394 -12.41344 -12.39857 -12.24875 -12.11724 -11.91709 -11.88970 -11.77789 -11.63050 -11.49086 -10.95232 -10.46956 -10.34132 -10.11558 -9.99965 -9.26478 -8.46316 -5.94669 1.36460 1.41615 1.50827 1.55661 1.97560 2.06753 2.29159 2.75128 2.83256 3.20405 3.32294 3.38142 3.55915 3.58380 3.69093 3.73302 4.01918 4.07357 4.15430 4.20301 4.20912 4.25213 4.31620 4.34368 4.42130 4.43280 4.51853 4.52613 4.66606 4.79305 4.81193 4.83452 4.86423 4.88541 4.97208 5.03350 5.06986 5.08585 5.10988 5.25509 5.37642 5.41659 5.45623 5.83707 5.97800 6.04266 6.09614 6.48377 6.61495 7.13973 7.17155 7.57597 8.13571 8.71389 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.001748 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.400403 B =16015.910456 C =16421.522422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.100 3.900 4 H 0.058 0.942 5 O -0.395 6.395 6 C 0.045 3.955 7 C -0.139 4.139 8 C -0.137 4.137 9 H 0.140 0.860 10 C 0.528 3.472 11 O -0.576 6.576 12 N -0.700 5.700 13 C 0.133 3.867 14 H 0.084 0.916 15 C -0.127 4.127 16 C 0.054 3.946 17 N -0.519 5.519 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.615 6.615 21 N -0.576 5.576 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.270 1.270 30 C 0.042 3.958 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.419 0.581 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.104 0.896 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -1.821 -24.003 28.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.042 3.958 4 H 0.076 0.924 5 O -0.315 6.315 6 C -0.031 4.031 7 C -0.177 4.177 8 C -0.158 4.158 9 H 0.158 0.842 10 C 0.315 3.685 11 O -0.455 6.455 12 N -0.352 5.352 13 C 0.026 3.974 14 H 0.102 0.898 15 C -0.166 4.166 16 C -0.074 4.074 17 N -0.244 5.244 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.501 6.501 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.196 1.196 30 C -0.086 4.086 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.140 0.860 40 H 0.257 0.743 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.133 0.867 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.122 0.878 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.777 -1.001 -23.709 28.496 hybrid contribution 0.325 -0.280 1.442 1.505 sum -15.452 -1.281 -22.267 27.133 Atomic orbital electron populations 1.21681 0.95161 1.02071 1.01544 1.21631 0.97152 0.94059 1.02737 1.22753 0.92301 0.94772 0.85999 0.92421 1.88422 1.43963 1.61095 1.38007 1.23309 0.86636 0.94661 0.98481 1.23158 1.02163 0.94385 0.97958 1.23060 0.97707 1.02348 0.92719 0.84233 1.20557 0.82270 0.74723 0.90969 1.90731 1.52529 1.50743 1.51472 1.45770 1.07639 1.73843 1.07951 1.22005 0.95997 0.96374 0.82983 0.89787 1.23021 0.98302 0.97530 0.97779 1.22858 0.91238 0.97149 0.96127 1.63215 1.34254 1.15896 1.11031 1.22028 0.98305 0.94929 0.92789 1.20790 0.84399 0.88661 0.83299 1.90484 1.66707 1.17894 1.75026 1.41940 1.43701 1.11738 1.24010 1.19683 1.25477 0.94476 1.06378 0.90361 1.26028 0.99174 0.97155 0.99031 1.69674 1.44986 1.10833 1.30750 0.84877 0.77875 0.77978 0.77643 1.19833 1.19737 1.19560 1.23148 0.91422 0.97132 0.96911 0.92518 0.91645 0.93668 0.90105 0.91182 0.89001 0.90809 0.90866 0.85959 0.74312 0.89510 0.90945 0.94709 0.91844 0.91454 0.86706 0.77052 0.91359 0.87833 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.85 71.98 0.71 -1.60 16 2 C -0.12 -1.84 5.66 30.59 0.17 -1.67 16 3 C 0.10 1.68 2.52 31.26 0.08 1.76 16 4 H 0.06 1.28 7.43 -2.39 -0.02 1.26 16 5 O -0.39 -6.71 10.81 -148.98 -1.61 -8.32 16 6 C 0.05 0.46 7.80 72.47 0.56 1.03 16 7 C -0.14 -1.15 6.49 31.87 0.21 -0.94 16 8 C -0.14 -1.62 2.90 -10.08 -0.03 -1.65 16 9 H 0.14 0.98 8.06 -2.39 -0.02 0.96 16 10 C 0.53 9.30 7.15 87.66 0.63 9.92 16 11 O -0.58 -15.44 15.40 -3.05 -0.05 -15.49 16 12 N -0.70 -9.83 5.18 -436.95 -2.26 -12.10 16 13 C 0.13 2.63 3.30 46.18 0.15 2.78 16 14 H 0.08 1.96 7.55 -2.39 -0.02 1.95 16 15 C -0.13 -2.98 6.77 31.98 0.22 -2.77 16 16 C 0.05 1.71 5.74 86.77 0.50 2.20 16 17 N -0.52 -15.78 4.86 -890.09 -4.33 -20.11 16 18 C 0.05 1.71 5.05 85.56 0.43 2.14 16 19 C 0.44 20.87 7.58 87.66 0.66 21.53 16 20 O -0.62 -33.85 14.61 -3.08 -0.04 -33.90 16 21 N -0.58 -29.52 5.29 -306.98 -1.62 -31.14 16 22 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 26 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 C 0.04 0.83 6.61 86.65 0.57 1.41 16 31 H 0.06 0.91 7.99 -2.39 -0.02 0.89 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.78 8.03 -2.39 -0.02 0.77 16 39 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.42 3.19 8.37 -92.70 -0.78 2.41 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 1.14 7.62 -2.39 -0.02 1.12 16 44 H 0.06 2.41 7.37 -2.39 -0.02 2.39 16 45 H 0.07 2.05 7.85 -2.39 -0.02 2.04 16 46 H 0.11 3.28 8.03 -2.38 -0.02 3.26 16 47 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.10 1.64 7.72 -2.39 -0.02 1.62 16 50 H 0.08 1.38 7.54 -2.39 -0.02 1.36 16 Total: -1.00 -74.61 402.89 -2.02 -76.62 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.56 Total: 32.95 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.15 Total: 15.86 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -7.93 Total: -112.82 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -1.70 Total: -57.71 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.61 -2.02 -76.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269151127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.389 kcal (2) G-P(sol) polarization free energy of solvation -74.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds