Wall clock time and date at job start Tue Mar 31 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50708 * 120.00173 * 2 1 4 4 C 1.53000 * 109.46860 * 119.99705 * 3 2 1 5 5 O 1.42905 * 109.46657 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47198 * 239.99793 * 3 2 1 7 7 C 1.50702 * 109.46878 * 56.93848 * 6 3 2 8 8 O 1.21277 * 120.00401 * 3.20617 * 7 6 3 9 9 N 1.34776 * 119.99662 * 183.20970 * 7 6 3 10 10 C 1.47427 * 125.65178 * 355.08699 * 9 7 6 11 11 C 1.54909 * 104.83361 * 155.83814 * 10 9 7 12 12 C 1.55157 * 101.58217 * 37.01197 * 11 10 9 13 13 C 1.47028 * 125.64951 * 174.78643 * 9 7 6 14 14 H 1.08996 * 109.87920 * 300.51172 * 13 9 7 15 15 C 1.52999 * 109.88115 * 61.67384 * 13 9 7 16 16 N 1.46904 * 109.46904 * 184.53533 * 15 13 9 17 17 C 1.46905 * 110.99734 * 185.03496 * 16 15 13 18 18 C 1.50702 * 109.46789 * 180.02562 * 17 16 15 19 19 O 1.21290 * 120.00199 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99809 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99943 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99720 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00130 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99921 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99595 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47064 * 90.00160 * 25 23 21 27 27 H 1.48504 * 109.46749 * 209.99718 * 25 23 21 28 28 H 1.48498 * 109.47206 * 329.99360 * 25 23 21 29 29 H 1.08002 * 119.99919 * 179.97438 * 1 2 3 30 30 H 1.07991 * 120.00041 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00260 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47117 * 295.03995 * 4 3 2 33 33 H 1.09000 * 109.47099 * 55.04533 * 4 3 2 34 34 H 1.09004 * 109.46482 * 175.04488 * 4 3 2 35 35 H 0.96701 * 113.99688 * 299.99553 * 5 3 2 36 36 H 1.09002 * 109.46733 * 176.93660 * 6 3 2 37 37 H 1.08998 * 109.47100 * 296.93756 * 6 3 2 38 38 H 1.09004 * 110.36520 * 274.68163 * 10 9 7 39 39 H 1.08998 * 110.36569 * 36.88915 * 10 9 7 40 40 H 1.09002 * 111.00110 * 155.08557 * 11 10 9 41 41 H 1.08998 * 111.00143 * 278.89746 * 11 10 9 42 42 H 1.08998 * 110.72064 * 82.85960 * 12 11 10 43 43 H 1.08998 * 110.72213 * 205.95778 * 12 11 10 44 44 H 1.09002 * 109.47436 * 304.53446 * 15 13 9 45 45 H 1.08997 * 109.47747 * 64.53532 * 15 13 9 46 46 H 1.00903 * 111.00084 * 61.08357 * 16 15 13 47 47 H 1.08992 * 109.47518 * 300.00030 * 17 16 15 48 48 H 1.08999 * 109.46706 * 60.00118 * 17 16 15 49 49 H 0.96999 * 119.99795 * 359.97438 * 20 18 17 50 50 H 0.96998 * 119.99795 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3861 1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9432 1.3862 -1.2492 7 6 2.0854 1.2309 -2.4785 8 8 0.8818 1.1295 -2.3693 9 7 2.6559 1.2047 -3.6993 10 6 4.0865 1.4185 -3.9840 11 6 4.3339 0.6998 -5.3338 12 6 3.0122 0.9952 -6.0909 13 6 1.9556 0.9519 -4.9671 14 1 1.4812 -0.0290 -4.9393 15 6 0.9024 2.0360 -5.2049 16 7 0.1355 1.7163 -6.4164 17 6 -0.8057 2.7956 -6.7437 18 6 -1.5731 2.4324 -7.9889 19 8 -1.3575 1.3780 -8.5482 20 7 -2.4989 3.2793 -8.4809 21 6 -3.1967 2.9492 -9.6139 22 1 -3.0041 2.0107 -10.1124 23 6 -4.1516 3.8220 -10.1209 24 7 -4.8207 3.5053 -11.2066 25 14 -4.4841 5.4456 -9.2590 26 1 -3.5910 6.4934 -9.8154 27 1 -5.9004 5.8381 -9.4720 28 1 -4.2254 5.2959 -7.8044 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 2.3114 1.4172 2.1370 33 1 3.5911 0.5108 1.2948 34 1 3.5534 2.2882 1.2060 35 1 0.5433 2.4033 -0.7643 36 1 3.4465 2.3526 -1.2770 37 1 3.6869 0.5898 -1.2221 38 1 4.2999 2.4834 -4.0765 39 1 4.6997 0.9763 -3.1989 40 1 5.1880 1.1317 -5.8555 41 1 4.4696 -0.3717 -5.1867 42 1 3.0460 1.9805 -6.5557 43 1 2.8145 0.2251 -6.8365 44 1 0.2282 2.0815 -4.3496 45 1 1.3952 3.0000 -5.3308 46 1 -0.3454 0.8347 -6.3178 47 1 -1.5014 2.9345 -5.9163 48 1 -0.2536 3.7200 -6.9134 49 1 -2.6716 4.1224 -8.0333 50 1 -5.4871 4.1148 -11.5607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270035341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:52 Heat of formation + Delta-G solvation = -90.376245 kcal Electronic energy + Delta-G solvation = -30027.393715 eV Core-core repulsion = 25862.398016 eV Total energy + Delta-G solvation = -4164.995699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84286 -39.04356 -38.37089 -37.12549 -35.35064 -33.87017 -33.23962 -32.31321 -31.64963 -31.20238 -30.41190 -28.36180 -26.96588 -24.84502 -23.64594 -22.78569 -22.42314 -21.17857 -19.94342 -19.50328 -19.14171 -18.28290 -17.57885 -16.99404 -16.86663 -16.17383 -15.69322 -15.55735 -15.33802 -14.96571 -14.62394 -14.58555 -14.06751 -13.91609 -13.77711 -13.45897 -13.20957 -13.15469 -12.96845 -12.75785 -12.57284 -12.48973 -12.38692 -12.29432 -12.04338 -11.96363 -11.77015 -11.65783 -11.51235 -11.25912 -11.17929 -10.95071 -10.92686 -10.57562 -10.37695 -10.19015 -9.95906 -9.55259 -9.36187 -8.95938 -8.53976 -8.17042 -8.09129 -6.29374 -3.80623 2.16813 2.32714 2.59832 3.04891 3.08748 3.16702 3.76725 3.95257 4.01758 4.11847 4.20019 4.30151 4.37847 4.46882 4.57169 4.63383 4.86344 4.91065 4.91660 5.01148 5.06943 5.12405 5.17211 5.17969 5.23467 5.32822 5.43338 5.45310 5.48624 5.57852 5.66482 5.71684 5.75641 5.77836 5.83655 5.85795 5.89293 5.96005 6.11048 6.19020 6.44463 6.62840 7.07214 7.20783 7.47251 7.58170 7.60607 7.88615 8.16429 8.61868 8.96821 9.44514 9.84953 10.83781 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.002327 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.124201 B =12029.088491 C =13209.888830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.197 4.197 3 C 0.178 3.822 4 C -0.134 4.134 5 O -0.561 6.561 6 C -0.162 4.162 7 C 0.529 3.471 8 O -0.532 6.532 9 N -0.614 5.614 10 C 0.098 3.902 11 C -0.138 4.138 12 C -0.113 4.113 13 C 0.142 3.858 14 H 0.076 0.924 15 C 0.049 3.951 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.451 3.549 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.387 0.613 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.519 -2.828 23.537 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.215 4.215 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.203 4.203 7 C 0.319 3.681 8 O -0.409 6.409 9 N -0.348 5.348 10 C -0.025 4.025 11 C -0.176 4.176 12 C -0.151 4.151 13 C 0.039 3.961 14 H 0.094 0.906 15 C -0.081 4.081 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.237 3.763 19 O -0.447 6.447 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.240 0.760 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.170 0.830 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.593 -3.173 23.244 31.885 hybrid contribution -1.286 1.059 0.556 1.756 sum 20.307 -2.114 23.800 31.357 Atomic orbital electron populations 1.23675 0.95982 1.01859 0.96675 1.23225 0.96834 0.97656 1.03796 1.19797 0.88121 0.85418 0.93005 1.21707 0.98810 1.02311 0.96329 1.86438 1.50899 1.48686 1.51189 1.22442 0.99741 1.04971 0.93107 1.20301 0.88567 0.75946 0.83312 1.90656 1.14718 1.49881 1.85681 1.48611 1.09470 1.70845 1.05921 1.22374 0.81473 1.00593 0.98028 1.22840 0.98829 1.00955 0.94930 1.22585 0.92004 1.04102 0.96450 1.21511 0.93493 0.98767 0.82348 0.90573 1.22275 0.95900 0.97992 0.91962 1.59993 1.29337 1.05464 1.34922 1.21673 0.94457 0.95595 0.96535 1.19699 0.83209 0.86112 0.87264 1.90557 1.67852 1.24713 1.61531 1.42211 1.35796 1.18730 1.26346 1.19430 1.15844 1.06975 1.01038 0.86283 1.25040 0.96527 0.98318 0.96323 1.69622 1.24569 1.37048 1.20956 0.86669 0.78975 0.84136 0.79604 1.19610 1.20188 1.19509 0.88824 0.87983 0.87483 0.91326 0.91090 0.91739 0.76037 0.88020 0.88142 0.91099 0.90681 0.89717 0.90677 0.89923 0.89377 0.93637 0.91312 0.83009 0.93759 0.89607 0.79691 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 12.63 29.02 0.37 -1.13 16 2 C -0.20 -1.82 7.45 -36.02 -0.27 -2.09 16 3 C 0.18 1.52 1.08 -91.77 -0.10 1.42 16 4 C -0.13 -0.87 8.82 37.16 0.33 -0.55 16 5 O -0.56 -6.15 11.93 -52.40 -0.63 -6.78 16 6 C -0.16 -1.14 3.98 -27.88 -0.11 -1.25 16 7 C 0.53 5.27 7.16 -10.98 -0.08 5.19 16 8 O -0.53 -6.81 10.73 -11.61 -0.12 -6.94 16 9 N -0.61 -5.54 3.07 -163.02 -0.50 -6.04 16 10 C 0.10 0.59 6.74 -2.53 -0.02 0.57 16 11 C -0.14 -0.85 7.08 -24.58 -0.17 -1.02 16 12 C -0.11 -1.04 6.27 -24.90 -0.16 -1.20 16 13 C 0.14 1.54 3.13 -66.96 -0.21 1.33 16 14 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 15 C 0.05 0.63 5.07 -3.82 -0.02 0.61 16 16 N -0.66 -10.51 5.89 -115.06 -0.68 -11.18 16 17 C 0.05 0.87 6.16 -4.97 -0.03 0.84 16 18 C 0.45 10.45 7.82 -10.98 -0.09 10.37 16 19 O -0.56 -15.32 15.78 5.55 0.09 -15.23 16 20 N -0.59 -14.38 5.09 -10.96 -0.06 -14.44 16 21 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.04 13.96 55.50 0.77 -25.26 16 25 Si 0.88 19.70 27.74 -169.99 -4.71 14.98 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 29 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.10 1.13 6.41 -52.49 -0.34 0.79 16 31 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.39 4.39 5.76 45.56 0.26 4.66 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.50 7.81 -51.93 -0.41 0.09 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.30 7.37 -51.93 -0.38 -0.08 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 45 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 46 H 0.35 5.91 8.48 -39.29 -0.33 5.58 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 50 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -34.21 399.29 -8.27 -42.48 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -7.64 Total: 17.16 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.80 Total: 5.24 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.46 Total: -56.93 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.66 Total: -28.95 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.21 -8.27 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.898 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds