Wall clock time and date at job start Tue Mar 31 2020 23:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99578 * 2 1 4 4 C 1.53005 * 109.47111 * 239.99927 * 3 2 1 5 5 O 1.42899 * 109.47397 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47215 * 119.99887 * 3 2 1 7 7 C 1.50696 * 109.47419 * 179.97438 * 6 3 2 8 8 O 1.21286 * 120.00107 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00251 * 180.02562 * 7 6 3 10 10 C 1.47418 * 125.64752 * 5.02108 * 9 7 6 11 11 C 1.55127 * 104.94253 * 156.03096 * 10 9 7 12 12 C 1.55164 * 101.48133 * 36.78307 * 11 10 9 13 13 C 1.47022 * 125.64739 * 185.06751 * 9 7 6 14 14 H 1.08997 * 109.88252 * 300.43743 * 13 9 7 15 15 C 1.53004 * 109.88294 * 61.60848 * 13 9 7 16 16 N 1.46905 * 109.47002 * 182.30065 * 15 13 9 17 17 C 1.46903 * 110.99804 * 185.06080 * 16 15 13 18 18 C 1.50700 * 109.46651 * 179.97438 * 17 16 15 19 19 O 1.21290 * 120.00612 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99879 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00488 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00018 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00316 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00250 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47035 * 90.00237 * 25 23 21 27 27 H 1.48499 * 109.46663 * 209.99928 * 25 23 21 28 28 H 1.48503 * 109.46948 * 329.99978 * 25 23 21 29 29 H 1.07990 * 120.00421 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99472 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00345 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47112 * 300.00144 * 4 3 2 33 33 H 1.09000 * 109.46582 * 60.00083 * 4 3 2 34 34 H 1.09003 * 109.46941 * 179.97438 * 4 3 2 35 35 H 0.96700 * 114.00195 * 59.99143 * 5 3 2 36 36 H 1.09002 * 109.46930 * 59.99904 * 6 3 2 37 37 H 1.09002 * 109.47153 * 299.99994 * 6 3 2 38 38 H 1.08999 * 110.37339 * 274.74995 * 10 9 7 39 39 H 1.09004 * 110.36545 * 36.96607 * 10 9 7 40 40 H 1.08992 * 110.94112 * 278.78933 * 11 10 9 41 41 H 1.08996 * 111.16155 * 154.86909 * 11 10 9 42 42 H 1.08997 * 110.71592 * 206.26595 * 12 11 10 43 43 H 1.08995 * 110.71813 * 83.16703 * 12 11 10 44 44 H 1.08998 * 109.46787 * 302.29285 * 15 13 9 45 45 H 1.08993 * 109.47154 * 62.29781 * 15 13 9 46 46 H 1.00903 * 111.00085 * 61.10307 * 16 15 13 47 47 H 1.08996 * 109.46904 * 299.99342 * 17 16 15 48 48 H 1.08992 * 109.47164 * 59.99645 * 17 16 15 49 49 H 0.97008 * 119.99838 * 359.97438 * 20 18 17 50 50 H 0.96991 * 120.00238 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 -1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9430 1.3863 1.2492 7 6 3.6969 2.6912 1.2490 8 8 3.5453 3.4790 0.3394 9 7 4.5397 2.9828 2.2595 10 6 4.8971 2.0791 3.3681 11 6 6.2761 2.5845 3.8674 12 6 6.1172 4.1201 3.7114 13 6 5.2542 4.2551 2.4392 14 1 5.8926 4.4468 1.5768 15 6 4.2496 5.3963 2.6108 16 7 4.9715 6.6697 2.7345 17 6 4.0459 7.7739 3.0206 18 6 4.8211 9.0607 3.1410 19 8 6.0260 9.0581 3.0026 20 7 4.1754 10.2144 3.4025 21 6 4.8805 11.3849 3.5126 22 1 5.9535 11.3826 3.3893 23 6 4.2147 12.5745 3.7816 24 7 2.9090 12.5777 3.9302 25 14 5.1755 14.1696 3.9309 26 1 5.2733 14.8151 2.5971 27 1 4.4775 15.0816 4.8723 28 1 6.5394 13.8798 4.4419 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 3.6515 0.5578 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3305 -1.2495 35 1 0.5437 2.4030 0.7658 36 1 3.6514 0.5579 1.2492 37 1 2.3164 1.3286 2.1392 38 1 4.1589 2.1483 4.1670 39 1 4.9733 1.0521 3.0108 40 1 7.0808 2.2088 3.2355 41 1 6.4409 2.3127 4.9099 42 1 7.0878 4.5959 3.5712 43 1 5.6024 4.5440 4.5735 44 1 3.5916 5.4346 1.7426 45 1 3.6564 5.2261 3.5091 46 1 5.5153 6.8591 1.9058 47 1 3.3217 7.8601 2.2106 48 1 3.5228 7.5764 3.9562 49 1 3.2116 10.2166 3.5129 50 1 2.4443 13.4079 4.1184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270035347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:55 Heat of formation + Delta-G solvation = -93.380266 kcal Electronic energy + Delta-G solvation = -29757.480496 eV Core-core repulsion = 25592.354532 eV Total energy + Delta-G solvation = -4165.125963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.66480 -38.97603 -38.16971 -37.21371 -35.20336 -33.78821 -33.33261 -32.13505 -31.36748 -31.19502 -30.19444 -28.14176 -26.76681 -24.82465 -23.82317 -22.92882 -22.36228 -21.01192 -19.98531 -19.45504 -18.89141 -17.84351 -17.49945 -17.04855 -16.63897 -16.01215 -15.81018 -15.47385 -15.15182 -14.91152 -14.63969 -14.46572 -14.18366 -13.82897 -13.68036 -13.41506 -13.32886 -13.21769 -12.94182 -12.58970 -12.53077 -12.33502 -12.20430 -11.98781 -11.78947 -11.64313 -11.50294 -11.47517 -11.44644 -11.34320 -11.04848 -10.83990 -10.81600 -10.49724 -10.36532 -10.18219 -9.86387 -9.68196 -9.47029 -8.82271 -8.38220 -7.98916 -7.91230 -6.37767 -3.78462 1.78213 2.48725 2.73052 3.20753 3.28931 3.35088 3.90345 3.96006 4.11807 4.18443 4.31715 4.35186 4.49146 4.51650 4.58918 4.72840 4.82316 4.85529 4.98225 5.04152 5.16608 5.20936 5.26637 5.29469 5.29826 5.41051 5.43533 5.56599 5.59889 5.65616 5.77159 5.83033 5.84266 5.89308 5.98046 6.05489 6.08074 6.17590 6.20535 6.27905 6.31693 6.35127 7.23267 7.37921 7.41596 7.58896 7.70751 8.07480 8.10486 8.65663 9.21841 9.58836 10.10423 10.80106 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002087 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.098124 B =13413.353553 C =14599.133137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.160 4.160 7 C 0.527 3.473 8 O -0.510 6.510 9 N -0.618 5.618 10 C 0.099 3.901 11 C -0.137 4.137 12 C -0.113 4.113 13 C 0.143 3.857 14 H 0.075 0.925 15 C 0.051 3.949 16 N -0.664 5.664 17 C 0.053 3.947 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.369 0.631 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.350 0.650 47 H 0.043 0.957 48 H 0.084 0.916 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -29.775 -1.992 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.207 4.207 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.341 6.341 6 C -0.200 4.200 7 C 0.315 3.685 8 O -0.385 6.385 9 N -0.354 5.354 10 C -0.024 4.024 11 C -0.175 4.175 12 C -0.151 4.151 13 C 0.039 3.961 14 H 0.093 0.907 15 C -0.080 4.080 16 N -0.297 5.297 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.216 0.784 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.169 0.831 47 H 0.061 0.939 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.877 -29.155 -2.520 29.323 hybrid contribution -1.054 0.597 0.009 1.211 sum -2.931 -28.558 -2.511 28.817 Atomic orbital electron populations 1.23897 0.96050 1.02494 0.99161 1.23602 0.96759 0.98708 1.01604 1.19860 0.88043 0.84146 0.94455 1.21942 0.98865 1.04270 0.95369 1.86756 1.50017 1.48754 1.48611 1.22382 1.00236 0.96728 1.00699 1.20094 0.78919 0.88544 0.80921 1.90721 1.63515 1.50172 1.34112 1.48639 1.45759 1.15857 1.25190 1.22356 0.96995 0.93673 0.89339 1.22869 0.96021 0.96701 1.01903 1.22568 1.00823 0.94617 0.97061 1.21476 0.92867 0.82898 0.98831 0.90675 1.22229 0.95441 0.89464 1.00839 1.60012 1.24698 1.00343 1.44612 1.21640 0.94196 0.91012 1.01154 1.19801 0.88429 0.84606 0.84357 1.90513 1.14311 1.86249 1.55652 1.41864 1.09959 1.06104 1.62205 1.19703 0.93861 0.83916 1.45303 0.87925 1.25269 0.95759 0.99650 0.97372 1.69611 1.07151 1.28598 1.49017 0.85852 0.79423 0.80886 0.78086 1.20441 1.20957 1.19417 0.87621 0.88196 0.86693 0.91967 0.92124 0.88714 0.78446 0.88263 0.88772 0.91391 0.90885 0.90754 0.89786 0.89502 0.89917 0.94083 0.91346 0.83144 0.93854 0.89758 0.77462 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 13.93 29.01 0.40 -0.71 16 2 C -0.19 -1.24 8.77 -36.03 -0.32 -1.55 16 3 C 0.18 1.52 0.94 -91.77 -0.09 1.43 16 4 C -0.15 -1.45 8.50 37.16 0.32 -1.14 16 5 O -0.54 -5.74 10.84 -53.49 -0.58 -6.32 16 6 C -0.16 -1.18 4.02 -27.89 -0.11 -1.29 16 7 C 0.53 5.87 7.14 -10.99 -0.08 5.79 16 8 O -0.51 -7.78 12.15 -12.70 -0.15 -7.93 16 9 N -0.62 -6.19 3.07 -162.88 -0.50 -6.69 16 10 C 0.10 0.66 6.65 -2.41 -0.02 0.64 16 11 C -0.14 -0.94 7.11 -24.46 -0.17 -1.11 16 12 C -0.11 -1.13 6.21 -24.89 -0.15 -1.29 16 13 C 0.14 1.70 3.09 -66.95 -0.21 1.49 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.05 0.72 5.04 -3.82 -0.02 0.70 16 16 N -0.66 -11.30 5.83 -115.06 -0.67 -11.97 16 17 C 0.05 0.99 6.16 -4.97 -0.03 0.96 16 18 C 0.44 10.80 7.82 -10.99 -0.09 10.72 16 19 O -0.58 -16.16 15.78 5.55 0.09 -16.08 16 20 N -0.56 -14.75 5.29 -10.96 -0.06 -14.80 16 21 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 22 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.06 13.05 55.50 0.72 -24.34 16 25 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.11 0.68 6.41 -52.49 -0.34 0.34 16 30 H 0.10 0.49 8.06 -52.48 -0.42 0.06 16 31 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.21 5.51 -51.93 -0.29 0.93 16 35 H 0.37 2.70 8.05 45.56 0.37 3.06 16 36 H 0.10 0.52 7.76 -51.93 -0.40 0.12 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.34 7.51 -51.93 -0.39 -0.05 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 44 H 0.04 0.66 6.95 -51.93 -0.36 0.30 16 45 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.35 6.30 8.49 -39.29 -0.33 5.97 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 49 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -34.75 404.92 -8.35 -43.09 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -7.47 Total: 16.05 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.80 Total: 6.48 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.50 Total: -57.81 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.65 Total: -30.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.75 -8.35 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.286 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds