Wall clock time and date at job start Tue Mar 31 2020 23:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99578 * 2 1 4 4 C 1.53005 * 109.47111 * 239.99927 * 3 2 1 5 5 O 1.42899 * 109.47397 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47215 * 119.99887 * 3 2 1 7 7 C 1.50696 * 109.47419 * 179.97438 * 6 3 2 8 8 O 1.21286 * 120.00107 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00251 * 180.02562 * 7 6 3 10 10 C 1.47418 * 125.64752 * 5.02108 * 9 7 6 11 11 C 1.55127 * 104.94253 * 156.03096 * 10 9 7 12 12 C 1.55164 * 101.48133 * 36.78307 * 11 10 9 13 13 C 1.47022 * 125.64739 * 185.06751 * 9 7 6 14 14 H 1.08997 * 109.88252 * 300.43743 * 13 9 7 15 15 C 1.53004 * 109.88294 * 61.60848 * 13 9 7 16 16 N 1.46905 * 109.47002 * 182.30065 * 15 13 9 17 17 C 1.46903 * 110.99804 * 185.06080 * 16 15 13 18 18 C 1.50700 * 109.46651 * 179.97438 * 17 16 15 19 19 O 1.21290 * 120.00612 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99879 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00488 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00018 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00316 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00250 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99875 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47035 * 90.00237 * 25 23 21 27 27 H 1.48499 * 109.46663 * 209.99928 * 25 23 21 28 28 H 1.48503 * 109.46948 * 329.99978 * 25 23 21 29 29 H 1.07990 * 120.00421 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99472 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00345 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47112 * 300.00144 * 4 3 2 33 33 H 1.09000 * 109.46582 * 60.00083 * 4 3 2 34 34 H 1.09003 * 109.46941 * 179.97438 * 4 3 2 35 35 H 0.96700 * 114.00195 * 59.99143 * 5 3 2 36 36 H 1.09002 * 109.46930 * 59.99904 * 6 3 2 37 37 H 1.09002 * 109.47153 * 299.99994 * 6 3 2 38 38 H 1.08999 * 110.37339 * 274.74995 * 10 9 7 39 39 H 1.09004 * 110.36545 * 36.96607 * 10 9 7 40 40 H 1.08992 * 110.94112 * 278.78933 * 11 10 9 41 41 H 1.08996 * 111.16155 * 154.86909 * 11 10 9 42 42 H 1.08997 * 110.71592 * 206.26595 * 12 11 10 43 43 H 1.08995 * 110.71813 * 83.16703 * 12 11 10 44 44 H 1.08998 * 109.46787 * 302.29285 * 15 13 9 45 45 H 1.08993 * 109.47154 * 62.29781 * 15 13 9 46 46 H 1.00903 * 111.00085 * 61.10307 * 16 15 13 47 47 H 1.08996 * 109.46904 * 299.99342 * 17 16 15 48 48 H 1.08992 * 109.47164 * 59.99645 * 17 16 15 49 49 H 0.97008 * 119.99838 * 359.97438 * 20 18 17 50 50 H 0.96991 * 120.00238 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3863 -1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9430 1.3863 1.2492 7 6 3.6969 2.6912 1.2490 8 8 3.5453 3.4790 0.3394 9 7 4.5397 2.9828 2.2595 10 6 4.8971 2.0791 3.3681 11 6 6.2761 2.5845 3.8674 12 6 6.1172 4.1201 3.7114 13 6 5.2542 4.2551 2.4392 14 1 5.8926 4.4468 1.5768 15 6 4.2496 5.3963 2.6108 16 7 4.9715 6.6697 2.7345 17 6 4.0459 7.7739 3.0206 18 6 4.8211 9.0607 3.1410 19 8 6.0260 9.0581 3.0026 20 7 4.1754 10.2144 3.4025 21 6 4.8805 11.3849 3.5126 22 1 5.9535 11.3826 3.3893 23 6 4.2147 12.5745 3.7816 24 7 2.9090 12.5777 3.9302 25 14 5.1755 14.1696 3.9309 26 1 5.2733 14.8151 2.5971 27 1 4.4775 15.0816 4.8723 28 1 6.5394 13.8798 4.4419 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 3.6515 0.5578 -1.2493 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3305 -1.2495 35 1 0.5437 2.4030 0.7658 36 1 3.6514 0.5579 1.2492 37 1 2.3164 1.3286 2.1392 38 1 4.1589 2.1483 4.1670 39 1 4.9733 1.0521 3.0108 40 1 7.0808 2.2088 3.2355 41 1 6.4409 2.3127 4.9099 42 1 7.0878 4.5959 3.5712 43 1 5.6024 4.5440 4.5735 44 1 3.5916 5.4346 1.7426 45 1 3.6564 5.2261 3.5091 46 1 5.5153 6.8591 1.9058 47 1 3.3217 7.8601 2.2106 48 1 3.5228 7.5764 3.9562 49 1 3.2116 10.2166 3.5129 50 1 2.4443 13.4079 4.1184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270035347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:54 Heat of formation + Delta-G solvation = -120.078045 kcal Electronic energy + Delta-G solvation = -29758.638198 eV Core-core repulsion = 25592.354532 eV Total energy + Delta-G solvation = -4166.283666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46334 -40.21190 -39.60971 -38.07990 -36.62627 -35.80485 -33.98993 -33.30950 -32.88495 -31.99229 -31.24166 -28.90277 -28.20445 -26.38850 -24.96422 -23.92673 -23.09967 -21.80121 -21.19408 -20.57031 -20.06986 -19.75394 -18.23344 -17.95472 -17.78554 -17.15176 -16.87297 -16.61836 -16.51951 -16.05521 -15.87968 -15.57774 -15.38727 -15.26890 -14.91921 -14.87535 -14.18650 -14.02863 -13.86369 -13.65439 -13.51343 -13.32543 -13.23689 -13.17088 -13.03072 -12.87254 -12.82374 -12.49529 -12.43692 -12.41707 -12.12528 -12.07577 -11.94916 -11.83818 -11.57257 -11.52794 -11.15944 -10.56426 -10.40622 -10.31798 -10.04420 -9.64282 -9.40456 -8.48352 -5.97645 1.31443 1.37079 1.40646 1.54067 1.68678 1.95527 2.01213 2.28455 2.91943 3.18124 3.31213 3.45498 3.55931 3.70675 3.75804 3.80405 3.90869 4.04236 4.19230 4.24133 4.25996 4.33476 4.40715 4.42019 4.47855 4.50083 4.56182 4.67641 4.71308 4.74057 4.85609 4.87502 4.93893 5.07159 5.07391 5.14703 5.19108 5.34587 5.38460 5.39309 5.48013 5.66971 5.79795 5.83025 6.02856 6.23965 6.56937 6.61305 6.85812 7.09709 7.27387 7.52402 8.07270 8.69201 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002087 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.098124 B =13413.353553 C =14599.133137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.171 3.829 4 C -0.148 4.148 5 O -0.566 6.566 6 C -0.149 4.149 7 C 0.518 3.482 8 O -0.562 6.562 9 N -0.617 5.617 10 C 0.096 3.904 11 C -0.127 4.127 12 C -0.111 4.111 13 C 0.144 3.856 14 H 0.051 0.949 15 C 0.062 3.938 16 N -0.667 5.667 17 C 0.067 3.933 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.996 3.004 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.271 1.271 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.379 0.621 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.019 0.981 45 H 0.079 0.921 46 H 0.341 0.659 47 H 0.055 0.945 48 H 0.107 0.893 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -32.200 -0.529 32.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.130 3.870 4 C -0.205 4.205 5 O -0.373 6.373 6 C -0.188 4.188 7 C 0.309 3.691 8 O -0.440 6.440 9 N -0.352 5.352 10 C -0.025 4.025 11 C -0.164 4.164 12 C -0.150 4.150 13 C 0.039 3.961 14 H 0.070 0.930 15 C -0.068 4.068 16 N -0.299 5.299 17 C -0.066 4.066 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.097 0.903 46 H 0.159 0.841 47 H 0.073 0.927 48 H 0.125 0.875 49 H 0.230 0.770 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.382 -31.625 -1.021 31.731 hybrid contribution -0.918 1.341 -0.480 1.694 sum -3.300 -30.284 -1.501 30.500 Atomic orbital electron populations 1.24031 0.96159 1.02924 0.98586 1.23566 0.96752 0.98184 1.02052 1.19960 0.88012 0.84705 0.94334 1.21926 0.99198 1.03372 0.96019 1.86724 1.50814 1.50111 1.49634 1.22382 1.00408 0.95119 1.00930 1.20879 0.78681 0.89421 0.80166 1.90715 1.65138 1.52050 1.36100 1.48744 1.45107 1.15484 1.25871 1.22647 0.96961 0.94343 0.88599 1.22871 0.96500 0.93595 1.03467 1.22493 0.99501 0.97453 0.95518 1.21322 0.92393 0.83412 0.98959 0.93042 1.22193 0.95585 0.88820 1.00189 1.60051 1.24667 1.00923 1.44219 1.21506 0.93718 0.88684 1.02687 1.20724 0.88329 0.85801 0.82457 1.90482 1.16235 1.87065 1.56871 1.41930 1.10054 1.06246 1.62719 1.19690 0.93305 0.85627 1.47779 0.90181 1.26103 0.96790 1.02378 0.96185 1.69675 1.08129 1.29819 1.48541 0.84886 0.77942 0.76763 0.78479 1.19691 1.19386 1.19616 0.88445 0.86580 0.84535 0.89588 0.93197 0.92112 0.77200 0.85256 0.86404 0.89861 0.87815 0.90362 0.87551 0.90827 0.90553 0.96301 0.90275 0.84130 0.92744 0.87546 0.77030 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 13.93 67.78 0.94 -0.92 16 2 C -0.19 -1.98 8.77 25.64 0.22 -1.75 16 3 C 0.17 2.72 0.94 -11.54 -0.01 2.71 16 4 C -0.15 -2.90 8.50 71.98 0.61 -2.29 16 5 O -0.57 -12.14 10.84 -131.53 -1.43 -13.57 16 6 C -0.15 -1.78 4.02 29.85 0.12 -1.66 16 7 C 0.52 11.13 7.14 87.66 0.63 11.76 16 8 O -0.56 -17.85 12.15 14.41 0.18 -17.68 16 9 N -0.62 -11.50 3.07 -787.63 -2.41 -13.91 16 10 C 0.10 0.93 6.65 86.93 0.58 1.51 16 11 C -0.13 -1.38 7.11 32.07 0.23 -1.15 16 12 C -0.11 -2.15 6.21 31.79 0.20 -1.96 16 13 C 0.14 3.43 3.09 45.34 0.14 3.57 16 14 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 15 C 0.06 1.78 5.04 86.30 0.44 2.22 16 16 N -0.67 -23.25 5.83 -517.93 -3.02 -26.27 16 17 C 0.07 2.52 6.16 85.56 0.53 3.05 16 18 C 0.44 22.01 7.82 87.66 0.69 22.70 16 19 O -0.62 -35.59 15.78 -3.06 -0.05 -35.63 16 20 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 21 C -0.33 -19.55 9.68 84.04 0.81 -18.74 16 22 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.92 13.05 21.66 0.28 -50.64 16 25 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.10 1.15 6.41 -2.92 -0.02 1.13 16 30 H 0.12 0.82 8.06 -2.91 -0.02 0.79 16 31 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.64 5.51 -2.39 -0.01 1.63 16 35 H 0.38 5.47 8.05 -74.06 -0.60 4.87 16 36 H 0.13 0.79 7.76 -2.39 -0.02 0.77 16 37 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.44 7.51 -2.38 -0.02 0.42 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.58 7.81 -2.39 -0.02 1.56 16 44 H 0.02 0.63 6.95 -2.39 -0.02 0.61 16 45 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 46 H 0.34 12.92 8.49 -89.69 -0.76 12.16 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 49 H 0.40 20.20 7.90 -92.70 -0.73 19.47 16 50 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -78.87 404.92 -0.58 -79.45 By element: Atomic # 1 Polarization: 47.06 SS G_CDS: -1.12 Total: 45.94 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.59 Total: 18.70 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -6.77 Total: -123.08 kcal Atomic # 8 Polarization: -65.58 SS G_CDS: -1.30 Total: -66.88 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -78.87 -0.58 -79.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.624 kcal (2) G-P(sol) polarization free energy of solvation -78.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds