Wall clock time and date at job start Tue Mar 31 2020 23:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99653 * 2 1 4 4 C 1.53000 * 109.46740 * 239.99786 * 3 2 1 5 5 O 1.42892 * 109.47536 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47276 * 120.00088 * 3 2 1 7 7 C 1.50695 * 109.47200 * 179.97438 * 6 3 2 8 8 O 1.21283 * 119.99987 * 0.02562 * 7 6 3 9 9 N 1.34783 * 120.00175 * 179.97438 * 7 6 3 10 10 C 1.47747 * 125.81782 * 0.02562 * 9 7 6 11 11 C 1.54911 * 104.83972 * 204.24918 * 10 9 7 12 12 C 1.55157 * 101.57964 * 322.90405 * 11 10 9 13 13 C 1.47021 * 125.65152 * 180.02562 * 9 7 6 14 14 H 1.09002 * 109.88116 * 59.31957 * 13 9 7 15 15 C 1.53003 * 109.87943 * 298.31637 * 13 9 7 16 16 N 1.46895 * 109.47301 * 55.31069 * 15 13 9 17 17 C 1.46904 * 111.00011 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 15 19 19 O 1.21293 * 119.99810 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99675 * 180.28082 * 18 17 16 21 21 C 1.37102 * 119.99634 * 179.72687 * 20 18 17 22 22 H 1.08002 * 119.99868 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99860 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99894 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00219 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47208 * 89.99837 * 25 23 21 27 27 H 1.48499 * 109.47268 * 210.00491 * 25 23 21 28 28 H 1.48501 * 109.47048 * 330.00292 * 25 23 21 29 29 H 1.08004 * 120.00239 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99992 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99768 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47419 * 300.00130 * 4 3 2 33 33 H 1.09004 * 109.47511 * 60.00053 * 4 3 2 34 34 H 1.09001 * 109.47264 * 180.02562 * 4 3 2 35 35 H 0.96709 * 114.00025 * 60.00404 * 5 3 2 36 36 H 1.09002 * 109.47038 * 59.99775 * 6 3 2 37 37 H 1.08995 * 109.46823 * 300.00023 * 6 3 2 38 38 H 1.09001 * 110.43561 * 85.36832 * 10 9 7 39 39 H 1.09004 * 110.38734 * 323.09739 * 10 9 7 40 40 H 1.08999 * 111.00211 * 204.83394 * 11 10 9 41 41 H 1.09003 * 111.04039 * 80.99204 * 11 10 9 42 42 H 1.08993 * 110.72399 * 277.13979 * 12 11 10 43 43 H 1.09002 * 110.72076 * 153.86756 * 12 11 10 44 44 H 1.08999 * 109.46732 * 295.31263 * 15 13 9 45 45 H 1.08998 * 109.46958 * 175.31962 * 15 13 9 46 46 H 1.00903 * 110.99867 * 56.05082 * 16 15 13 47 47 H 1.09009 * 109.46542 * 60.00300 * 17 16 15 48 48 H 1.08998 * 109.47050 * 300.00834 * 17 16 15 49 49 H 0.97001 * 120.00485 * 359.71840 * 20 18 17 50 50 H 0.97004 * 119.99542 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3861 -1.2492 5 8 1.1349 2.3912 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6969 2.6911 1.2489 8 8 3.5452 3.4789 0.3393 9 7 4.5390 2.9832 2.2599 10 6 4.8197 2.1224 3.4274 11 6 5.2985 3.0965 4.5327 12 6 6.1213 4.1221 3.7088 13 6 5.3331 4.2141 2.3853 14 1 4.6725 5.0809 2.4065 15 6 6.3041 4.3290 1.2083 16 7 5.5553 4.2540 -0.0533 17 6 6.4572 4.3617 -1.2079 18 6 5.6550 4.2816 -2.4811 19 8 4.4504 4.1483 -2.4315 20 7 6.2767 4.3527 -3.6748 21 6 5.5474 4.2742 -4.8332 22 1 4.4749 4.1548 -4.7890 23 6 6.1882 4.3481 -6.0638 24 7 7.4933 4.4928 -6.1174 25 14 5.1949 4.2404 -7.6421 26 1 4.7764 5.6032 -8.0576 27 1 6.0272 3.6309 -8.7102 28 1 3.9912 3.4013 -7.4131 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.6514 0.5576 -1.2492 33 1 2.3164 1.3283 -2.1393 34 1 3.4884 2.3299 -1.2491 35 1 0.5432 2.4034 0.7643 36 1 3.6514 0.5578 1.2492 37 1 2.3164 1.3285 2.1391 38 1 5.6035 1.4030 3.1902 39 1 3.9142 1.6049 3.7442 40 1 5.9286 2.5837 5.2593 41 1 4.4526 3.5781 5.0232 42 1 7.1313 3.7527 3.5314 43 1 6.1459 5.0892 4.2110 44 1 7.0255 3.5131 1.2517 45 1 6.8299 5.2822 1.2628 46 1 4.8362 4.9609 -0.0895 47 1 7.1801 3.5463 -1.1815 48 1 6.9837 5.3154 -1.1699 49 1 7.2399 4.4597 -3.7144 50 1 7.9406 4.5440 -6.9766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270035349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:59 Heat of formation + Delta-G solvation = -67.697305 kcal Electronic energy + Delta-G solvation = -31568.740453 eV Core-core repulsion = 27404.728187 eV Total energy + Delta-G solvation = -4164.012267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.20526 -38.56351 -37.92992 -36.62869 -34.95709 -33.59744 -32.83389 -31.76916 -31.03753 -30.84653 -30.07168 -27.49976 -26.68137 -24.63171 -23.44511 -22.77249 -21.78997 -21.04259 -19.49244 -19.08187 -18.61718 -17.70025 -17.10944 -16.74834 -16.33235 -15.72889 -15.37064 -15.11490 -14.92403 -14.45184 -14.30542 -14.08723 -13.77229 -13.74710 -13.40294 -13.20677 -13.16351 -12.95624 -12.46856 -12.28269 -12.06775 -11.95856 -11.70324 -11.51111 -11.45521 -11.43490 -11.35648 -11.26856 -11.02812 -10.94576 -10.91025 -10.84616 -10.75286 -10.28001 -10.05844 -9.90575 -9.37776 -9.29961 -8.83598 -8.41899 -8.04932 -7.76179 -7.49463 -6.25837 -3.64946 2.21257 3.13253 3.28205 3.30740 3.35265 3.42557 4.14579 4.21293 4.32918 4.35503 4.48740 4.61680 4.73745 4.80766 4.94980 5.03485 5.13642 5.19312 5.24463 5.29127 5.37879 5.40936 5.42399 5.47367 5.54629 5.59783 5.63381 5.66721 5.70678 5.82324 5.88945 5.98039 6.00321 6.15891 6.20624 6.36245 6.47791 6.49372 6.56737 6.61635 6.73597 7.40702 7.53746 7.70789 7.90787 7.95600 8.10259 8.25759 8.82319 8.88060 9.37146 9.75178 10.29795 10.92758 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.003737 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.350873 B = 7491.207412 C = 9809.935868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.180 4.180 3 C 0.178 3.822 4 C -0.154 4.154 5 O -0.530 6.530 6 C -0.153 4.153 7 C 0.515 3.485 8 O -0.433 6.433 9 N -0.621 5.621 10 C 0.102 3.898 11 C -0.132 4.132 12 C -0.126 4.126 13 C 0.143 3.857 14 H 0.068 0.932 15 C 0.047 3.953 16 N -0.639 5.639 17 C 0.045 3.955 18 C 0.444 3.556 19 O -0.556 6.556 20 N -0.574 5.574 21 C -0.290 4.290 22 H 0.102 0.898 23 C 0.018 3.982 24 N -0.908 5.908 25 Si 0.926 3.074 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.132 0.868 35 H 0.358 0.642 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.360 0.640 47 H 0.075 0.925 48 H 0.033 0.967 49 H 0.389 0.611 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -6.662 24.008 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.198 4.198 3 C 0.137 3.863 4 C -0.210 4.210 5 O -0.334 6.334 6 C -0.194 4.194 7 C 0.302 3.698 8 O -0.299 6.299 9 N -0.360 5.360 10 C -0.022 4.022 11 C -0.170 4.170 12 C -0.165 4.165 13 C 0.039 3.961 14 H 0.086 0.914 15 C -0.084 4.084 16 N -0.276 5.276 17 C -0.087 4.087 18 C 0.229 3.771 19 O -0.437 6.437 20 N -0.213 5.213 21 C -0.419 4.419 22 H 0.120 0.880 23 C -0.182 4.182 24 N -0.551 5.551 25 Si 0.754 3.246 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.195 1.195 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.204 0.796 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.184 0.816 47 H 0.094 0.906 48 H 0.051 0.949 49 H 0.222 0.778 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.431 -6.853 22.650 24.075 hybrid contribution 0.397 0.441 -0.213 0.631 sum -4.034 -6.412 22.437 23.681 Atomic orbital electron populations 1.23803 0.96069 1.02078 1.00779 1.23720 0.96731 0.99186 1.00192 1.19926 0.87830 0.83377 0.95164 1.22085 0.98565 1.06468 0.93931 1.86864 1.49803 1.48914 1.47800 1.22288 0.99927 0.97380 0.99783 1.19855 0.79972 0.88907 0.81108 1.90823 1.59358 1.48464 1.31295 1.48516 1.45007 1.19354 1.23137 1.22244 1.00263 0.93689 0.86010 1.22748 1.00104 0.97110 0.97065 1.22651 0.99163 1.00110 0.94558 1.21472 0.92222 0.88541 0.93845 0.91371 1.22441 0.95746 0.99431 0.90752 1.60715 1.11680 1.56963 0.98257 1.21722 0.95405 0.99619 0.91999 1.19873 0.88862 0.84064 0.84322 1.90587 1.13804 1.52790 1.86526 1.41878 1.09776 1.65129 1.04484 1.19686 0.93582 1.45965 0.82713 0.88046 1.25196 0.95779 0.97943 0.99308 1.69624 1.07746 1.51317 1.26376 0.85910 0.79313 0.78397 0.80985 1.20614 1.21124 1.19486 0.87771 0.88630 0.87036 0.93108 0.92901 0.84977 0.79614 0.89095 0.90068 0.91963 0.91272 0.90183 0.90790 0.90438 0.90298 0.91583 0.95525 0.81589 0.90648 0.94931 0.77821 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 13.93 29.01 0.40 -1.63 16 2 C -0.18 -2.12 8.77 -36.03 -0.32 -2.44 16 3 C 0.18 2.56 0.94 -91.77 -0.09 2.47 16 4 C -0.15 -2.88 8.50 37.16 0.32 -2.56 16 5 O -0.53 -8.32 10.85 -53.48 -0.58 -8.90 16 6 C -0.15 -1.82 3.95 -27.89 -0.11 -1.93 16 7 C 0.52 7.51 6.95 -10.98 -0.08 7.43 16 8 O -0.43 -8.20 8.81 -12.92 -0.11 -8.31 16 9 N -0.62 -7.20 3.07 -162.75 -0.50 -7.70 16 10 C 0.10 0.80 6.71 -2.35 -0.02 0.78 16 11 C -0.13 -0.81 7.09 -24.58 -0.17 -0.98 16 12 C -0.13 -0.93 6.48 -24.90 -0.16 -1.09 16 13 C 0.14 1.59 3.29 -66.95 -0.22 1.37 16 14 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.05 0.62 5.29 -3.83 -0.02 0.60 16 16 N -0.64 -11.28 2.97 -115.05 -0.34 -11.62 16 17 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 18 C 0.44 11.06 7.82 -10.98 -0.09 10.97 16 19 O -0.56 -15.58 14.11 5.55 0.08 -15.51 16 20 N -0.57 -15.32 5.29 -10.96 -0.06 -15.38 16 21 C -0.29 -8.46 9.68 -14.93 -0.14 -8.60 16 22 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16 23 C 0.02 0.51 5.50 -17.47 -0.10 0.41 16 24 N -0.91 -25.85 13.05 55.50 0.72 -25.13 16 25 Si 0.93 22.17 29.55 -169.99 -5.02 17.15 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.10 1.11 6.41 -52.48 -0.34 0.77 16 30 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.13 3.00 4.02 -51.93 -0.21 2.79 16 35 H 0.36 4.03 8.05 45.56 0.37 4.39 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.45 7.50 -51.93 -0.39 0.07 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 45 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.36 7.16 6.97 -39.29 -0.27 6.88 16 47 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.39 10.03 7.90 -40.82 -0.32 9.71 16 50 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -34.79 395.76 -8.07 -42.86 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -7.40 Total: 20.93 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -0.82 Total: 5.65 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.18 Total: -59.83 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.62 Total: -32.72 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.79 -8.07 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.840 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds