Wall clock time and date at job start Tue Mar 31 2020 23:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99653 * 2 1 4 4 C 1.53000 * 109.46740 * 239.99786 * 3 2 1 5 5 O 1.42892 * 109.47536 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47276 * 120.00088 * 3 2 1 7 7 C 1.50695 * 109.47200 * 179.97438 * 6 3 2 8 8 O 1.21283 * 119.99987 * 0.02562 * 7 6 3 9 9 N 1.34783 * 120.00175 * 179.97438 * 7 6 3 10 10 C 1.47747 * 125.81782 * 0.02562 * 9 7 6 11 11 C 1.54911 * 104.83972 * 204.24918 * 10 9 7 12 12 C 1.55157 * 101.57964 * 322.90405 * 11 10 9 13 13 C 1.47021 * 125.65152 * 180.02562 * 9 7 6 14 14 H 1.09002 * 109.88116 * 59.31957 * 13 9 7 15 15 C 1.53003 * 109.87943 * 298.31637 * 13 9 7 16 16 N 1.46895 * 109.47301 * 55.31069 * 15 13 9 17 17 C 1.46904 * 111.00011 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47192 * 180.02562 * 17 16 15 19 19 O 1.21293 * 119.99810 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99675 * 180.28082 * 18 17 16 21 21 C 1.37102 * 119.99634 * 179.72687 * 20 18 17 22 22 H 1.08002 * 119.99868 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99860 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99894 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00219 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47208 * 89.99837 * 25 23 21 27 27 H 1.48499 * 109.47268 * 210.00491 * 25 23 21 28 28 H 1.48501 * 109.47048 * 330.00292 * 25 23 21 29 29 H 1.08004 * 120.00239 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99992 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99768 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47419 * 300.00130 * 4 3 2 33 33 H 1.09004 * 109.47511 * 60.00053 * 4 3 2 34 34 H 1.09001 * 109.47264 * 180.02562 * 4 3 2 35 35 H 0.96709 * 114.00025 * 60.00404 * 5 3 2 36 36 H 1.09002 * 109.47038 * 59.99775 * 6 3 2 37 37 H 1.08995 * 109.46823 * 300.00023 * 6 3 2 38 38 H 1.09001 * 110.43561 * 85.36832 * 10 9 7 39 39 H 1.09004 * 110.38734 * 323.09739 * 10 9 7 40 40 H 1.08999 * 111.00211 * 204.83394 * 11 10 9 41 41 H 1.09003 * 111.04039 * 80.99204 * 11 10 9 42 42 H 1.08993 * 110.72399 * 277.13979 * 12 11 10 43 43 H 1.09002 * 110.72076 * 153.86756 * 12 11 10 44 44 H 1.08999 * 109.46732 * 295.31263 * 15 13 9 45 45 H 1.08998 * 109.46958 * 175.31962 * 15 13 9 46 46 H 1.00903 * 110.99867 * 56.05082 * 16 15 13 47 47 H 1.09009 * 109.46542 * 60.00300 * 17 16 15 48 48 H 1.08998 * 109.47050 * 300.00834 * 17 16 15 49 49 H 0.97001 * 120.00485 * 359.71840 * 20 18 17 50 50 H 0.97004 * 119.99542 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3861 -1.2492 5 8 1.1349 2.3912 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6969 2.6911 1.2489 8 8 3.5452 3.4789 0.3393 9 7 4.5390 2.9832 2.2599 10 6 4.8197 2.1224 3.4274 11 6 5.2985 3.0965 4.5327 12 6 6.1213 4.1221 3.7088 13 6 5.3331 4.2141 2.3853 14 1 4.6725 5.0809 2.4065 15 6 6.3041 4.3290 1.2083 16 7 5.5553 4.2540 -0.0533 17 6 6.4572 4.3617 -1.2079 18 6 5.6550 4.2816 -2.4811 19 8 4.4504 4.1483 -2.4315 20 7 6.2767 4.3527 -3.6748 21 6 5.5474 4.2742 -4.8332 22 1 4.4749 4.1548 -4.7890 23 6 6.1882 4.3481 -6.0638 24 7 7.4933 4.4928 -6.1174 25 14 5.1949 4.2404 -7.6421 26 1 4.7764 5.6032 -8.0576 27 1 6.0272 3.6309 -8.7102 28 1 3.9912 3.4013 -7.4131 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.6514 0.5576 -1.2492 33 1 2.3164 1.3283 -2.1393 34 1 3.4884 2.3299 -1.2491 35 1 0.5432 2.4034 0.7643 36 1 3.6514 0.5578 1.2492 37 1 2.3164 1.3285 2.1391 38 1 5.6035 1.4030 3.1902 39 1 3.9142 1.6049 3.7442 40 1 5.9286 2.5837 5.2593 41 1 4.4526 3.5781 5.0232 42 1 7.1313 3.7527 3.5314 43 1 6.1459 5.0892 4.2110 44 1 7.0255 3.5131 1.2517 45 1 6.8299 5.2822 1.2628 46 1 4.8362 4.9609 -0.0895 47 1 7.1801 3.5463 -1.1815 48 1 6.9837 5.3154 -1.1699 49 1 7.2399 4.4597 -3.7144 50 1 7.9406 4.5440 -6.9766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270035349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:58 Heat of formation + Delta-G solvation = -93.607146 kcal Electronic energy + Delta-G solvation = -31569.863988 eV Core-core repulsion = 27404.728187 eV Total energy + Delta-G solvation = -4165.135802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.18139 -39.97495 -39.48496 -37.66622 -36.41253 -35.62163 -33.91020 -33.18766 -32.66409 -31.80627 -31.13446 -28.66411 -28.18813 -26.27176 -24.66827 -23.92912 -22.68833 -21.79456 -20.95969 -20.51390 -19.87149 -19.58404 -18.15525 -17.72397 -17.68788 -17.10208 -16.65987 -16.40468 -16.20156 -15.94131 -15.88884 -15.51189 -15.03740 -14.83826 -14.69038 -14.52420 -14.08552 -13.92259 -13.83520 -13.47747 -13.41100 -13.32197 -13.14146 -12.97739 -12.87685 -12.72187 -12.42977 -12.39731 -12.37305 -12.21227 -12.14210 -12.01930 -11.86451 -11.82343 -11.52806 -11.43505 -10.98304 -10.30569 -10.15042 -9.98849 -9.90931 -9.36944 -8.77237 -8.43145 -5.90062 1.33586 1.36632 1.38304 1.52044 2.15971 2.17907 2.30360 2.36248 3.05859 3.24237 3.42432 3.61099 3.68948 3.84187 3.85112 3.99077 4.02515 4.14554 4.29302 4.35057 4.41016 4.42279 4.45796 4.55051 4.58798 4.63187 4.66030 4.73326 4.80670 4.82167 4.90066 4.95046 5.02382 5.04828 5.18156 5.18434 5.23045 5.43169 5.44360 5.63236 5.69559 5.81304 5.92249 5.99051 6.26997 6.63773 6.68444 6.97312 6.99518 7.20049 7.64654 7.85652 8.24094 8.75156 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.003737 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.350873 B = 7491.207412 C = 9809.935868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.192 4.192 3 C 0.182 3.818 4 C -0.154 4.154 5 O -0.559 6.559 6 C -0.143 4.143 7 C 0.504 3.496 8 O -0.487 6.487 9 N -0.621 5.621 10 C 0.094 3.906 11 C -0.122 4.122 12 C -0.117 4.117 13 C 0.140 3.860 14 H 0.050 0.950 15 C 0.048 3.952 16 N -0.645 5.645 17 C 0.060 3.940 18 C 0.439 3.561 19 O -0.589 6.589 20 N -0.583 5.583 21 C -0.324 4.324 22 H 0.073 0.927 23 C -0.016 4.016 24 N -0.925 5.925 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.276 1.276 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.095 0.905 35 H 0.376 0.624 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.345 0.655 47 H 0.089 0.911 48 H 0.049 0.951 49 H 0.392 0.608 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.372 -8.022 26.471 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.210 4.210 3 C 0.141 3.859 4 C -0.211 4.211 5 O -0.366 6.366 6 C -0.183 4.183 7 C 0.292 3.708 8 O -0.357 6.357 9 N -0.359 5.359 10 C -0.028 4.028 11 C -0.160 4.160 12 C -0.156 4.156 13 C 0.035 3.965 14 H 0.069 0.931 15 C -0.082 4.082 16 N -0.281 5.281 17 C -0.072 4.072 18 C 0.226 3.774 19 O -0.473 6.473 20 N -0.222 5.222 21 C -0.454 4.454 22 H 0.091 0.909 23 C -0.215 4.215 24 N -0.567 5.567 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.201 1.201 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.114 0.886 35 H 0.224 0.776 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.167 0.833 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.225 0.775 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.946 -8.231 25.185 26.788 hybrid contribution 0.241 0.887 -0.926 1.305 sum -3.704 -7.344 24.258 25.615 Atomic orbital electron populations 1.24001 0.95758 1.03002 0.98738 1.23628 0.97092 0.98293 1.01976 1.19771 0.87787 0.84345 0.94028 1.21987 0.98882 1.04841 0.95366 1.86809 1.50604 1.49934 1.49234 1.22216 0.99994 0.96398 0.99702 1.20394 0.80151 0.89304 0.80978 1.90823 1.61319 1.50130 1.33455 1.48584 1.43892 1.19981 1.23450 1.22532 1.01468 0.93804 0.84999 1.22751 1.00329 0.96236 0.96647 1.22638 0.99046 1.01502 0.92400 1.21562 0.91902 0.88062 0.94944 0.93137 1.22567 0.96101 1.00148 0.89414 1.60720 1.11462 1.56644 0.99281 1.21555 0.94843 1.00924 0.89917 1.20893 0.88945 0.82065 0.85532 1.90578 1.15747 1.53669 1.87262 1.41936 1.09736 1.65946 1.04624 1.19592 0.92782 1.48466 0.84541 0.90870 1.25966 0.96910 0.96825 1.01783 1.69685 1.08642 1.50858 1.27551 0.84983 0.77799 0.78607 0.77267 1.19705 1.19303 1.20144 0.88163 0.86335 0.85378 0.92210 0.96006 0.88635 0.77617 0.87579 0.86774 0.91271 0.89530 0.87637 0.90454 0.89595 0.88947 0.91024 0.94408 0.83300 0.89257 0.93288 0.77470 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 13.93 67.78 0.94 -2.54 16 2 C -0.19 -4.27 8.77 25.65 0.22 -4.04 16 3 C 0.18 5.24 0.94 -11.54 -0.01 5.23 16 4 C -0.15 -6.11 8.50 71.98 0.61 -5.50 16 5 O -0.56 -18.11 10.85 -131.53 -1.43 -19.53 16 6 C -0.14 -3.21 3.95 29.85 0.12 -3.09 16 7 C 0.50 14.68 6.95 87.65 0.61 15.29 16 8 O -0.49 -19.37 8.81 14.62 0.13 -19.24 16 9 N -0.62 -13.58 3.07 -787.22 -2.42 -16.00 16 10 C 0.09 1.17 6.71 86.79 0.58 1.76 16 11 C -0.12 -1.03 7.09 31.99 0.23 -0.80 16 12 C -0.12 -1.38 6.48 31.78 0.21 -1.18 16 13 C 0.14 2.95 3.29 45.34 0.15 3.10 16 14 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 15 C 0.05 1.22 5.29 86.31 0.46 1.68 16 16 N -0.64 -23.45 2.97 -517.92 -1.54 -24.98 16 17 C 0.06 2.38 6.17 85.56 0.53 2.91 16 18 C 0.44 22.95 7.82 87.66 0.69 23.63 16 19 O -0.59 -35.30 14.11 -3.07 -0.04 -35.34 16 20 N -0.58 -32.45 5.29 -306.98 -1.62 -34.08 16 21 C -0.32 -19.76 9.68 84.04 0.81 -18.94 16 22 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 24 N -0.93 -52.93 13.05 21.66 0.28 -52.64 16 25 Si 0.99 46.04 29.55 68.60 2.03 48.07 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 29 H 0.10 2.03 6.41 -2.91 -0.02 2.01 16 30 H 0.12 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.02 0.92 8.14 -2.38 -0.02 0.91 16 34 H 0.10 4.66 4.02 -2.39 -0.01 4.65 16 35 H 0.38 8.45 8.05 -74.05 -0.60 7.86 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 1.78 7.86 -2.39 -0.02 1.76 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.80 7.50 -2.38 -0.02 0.78 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.90 7.77 -2.39 -0.02 0.89 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 1.75 8.03 -2.39 -0.02 1.73 16 45 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.34 14.50 6.97 -89.69 -0.63 13.87 16 47 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.39 20.87 7.90 -92.71 -0.73 20.14 16 50 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -81.22 395.76 1.01 -80.21 By element: Atomic # 1 Polarization: 57.48 SS G_CDS: -0.99 Total: 56.49 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.61 Total: 17.05 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.30 Total: -127.70 kcal Atomic # 8 Polarization: -72.77 SS G_CDS: -1.34 Total: -74.11 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -81.22 1.01 -80.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270035349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.398 kcal (2) G-P(sol) polarization free energy of solvation -81.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds