Wall clock time and date at job start Tue Mar 31 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.53006 * 109.46649 * 240.00272 * 2 1 3 5 5 N 1.46500 * 109.47202 * 120.00795 * 2 1 3 6 6 C 1.34773 * 120.00431 * 59.99807 * 5 2 1 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 2 9 9 C 1.47164 * 136.00221 * 359.89760 * 8 6 5 10 10 C 1.53184 * 87.76603 * 153.42078 * 9 8 6 11 11 C 1.47157 * 136.00118 * 180.27497 * 8 6 5 12 12 C 1.52654 * 113.93819 * 139.44069 * 10 9 8 13 13 O 1.43407 * 108.27120 * 178.16141 * 12 10 9 14 14 C 1.42808 * 113.34810 * 294.60895 * 13 12 10 15 15 C 1.50280 * 110.54060 * 51.38943 * 14 13 12 16 16 O 1.21280 * 118.99452 * 161.41897 * 15 14 13 17 17 N 1.34314 * 122.00928 * 341.39005 * 15 14 13 18 18 C 1.46495 * 119.41433 * 182.04650 * 17 15 14 19 19 C 1.53001 * 109.47794 * 269.98484 * 18 17 15 20 20 C 1.50700 * 109.47236 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00151 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99926 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99843 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00351 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46950 * 89.99656 * 24 22 20 26 26 H 1.48493 * 109.47294 * 210.00256 * 24 22 20 27 27 H 1.48502 * 109.46591 * 330.00292 * 24 22 20 28 28 H 1.09001 * 109.46374 * 299.99353 * 1 2 3 29 29 H 1.08998 * 109.47098 * 59.99166 * 1 2 3 30 30 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47533 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47164 * 300.01079 * 3 2 1 33 33 H 1.09003 * 109.46366 * 60.00235 * 3 2 1 34 34 H 1.09001 * 109.47528 * 300.00006 * 4 2 1 35 35 H 1.09003 * 109.47135 * 60.00032 * 4 2 1 36 36 H 1.09001 * 109.47123 * 179.97438 * 4 2 1 37 37 H 0.97000 * 119.99456 * 239.99369 * 5 2 1 38 38 H 1.09000 * 113.49017 * 268.12308 * 9 8 6 39 39 H 1.09001 * 113.48776 * 38.62286 * 9 8 6 40 40 H 1.09000 * 113.49178 * 321.37250 * 11 8 6 41 41 H 1.09006 * 113.49058 * 91.87380 * 11 8 6 42 42 H 1.09001 * 109.70508 * 297.86619 * 12 10 9 43 43 H 1.09001 * 109.70420 * 58.48604 * 12 10 9 44 44 H 1.08995 * 109.26438 * 291.11668 * 14 13 12 45 45 H 1.08999 * 109.26469 * 171.66017 * 14 13 12 46 46 H 1.09007 * 109.46736 * 29.98742 * 18 17 15 47 47 H 1.09003 * 109.47194 * 149.97889 * 18 17 15 48 48 H 1.09002 * 109.46721 * 299.99963 * 19 18 17 49 49 H 1.09000 * 109.46738 * 59.99501 * 19 18 17 50 50 H 0.96996 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0184 -0.6908 1.1961 6 6 1.6928 -1.9811 1.4093 7 8 0.9933 -2.5718 0.6091 8 7 2.1466 -2.6181 2.5069 9 6 2.9885 -2.2679 3.6620 10 6 2.2501 -3.3522 4.4529 11 6 2.0232 -3.9710 3.0726 12 6 3.1544 -4.1792 5.3632 13 8 2.3382 -5.1212 6.0723 14 6 1.4173 -4.5061 6.9740 15 6 0.6254 -3.4388 6.2724 16 8 -0.4126 -3.0552 6.7685 17 7 1.0325 -2.8965 5.1130 18 6 0.2393 -1.8277 4.5009 19 6 -0.8001 -2.4392 3.5593 20 6 -1.6165 -1.3397 2.9302 21 1 -1.4145 -0.3080 3.1775 22 6 -2.6213 -1.6509 2.0388 23 7 -2.8669 -2.9072 1.7372 24 14 -3.6337 -0.2882 1.2595 25 1 -2.9871 0.1479 -0.0043 26 1 -5.0002 -0.7913 0.9685 27 1 -3.7183 0.8622 2.1948 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6766 -1.7489 -1.2495 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2497 37 1 2.5761 -0.2194 1.8345 38 1 4.0459 -2.4847 3.5106 39 1 2.8137 -1.2595 4.0371 40 1 1.0310 -4.4049 2.9486 41 1 2.8211 -4.6460 2.7626 42 1 3.8927 -4.7110 4.7629 43 1 3.6598 -3.5239 6.0727 44 1 1.9684 -4.0594 7.8016 45 1 0.7356 -5.2623 7.3632 46 1 -0.2670 -1.2589 5.2808 47 1 0.8959 -1.1656 3.9365 48 1 -0.2938 -3.0080 2.7794 49 1 -1.4567 -3.1013 4.1237 50 1 -3.5740 -3.1262 1.1104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273616003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:07 Heat of formation + Delta-G solvation = -45.360318 kcal Electronic energy + Delta-G solvation = -33276.314186 eV Core-core repulsion = 29113.270524 eV Total energy + Delta-G solvation = -4163.043662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47601 -39.56716 -38.34198 -37.42828 -35.77243 -34.35345 -32.78521 -31.80047 -30.27579 -29.57597 -27.45780 -27.13569 -26.69034 -26.23637 -25.90124 -24.13936 -22.14435 -21.00921 -20.34950 -18.98895 -18.25809 -17.79946 -17.50579 -16.67698 -16.02282 -15.95777 -15.53797 -15.36500 -14.86272 -14.59571 -14.50008 -14.29622 -14.01656 -13.72810 -13.52109 -13.16380 -13.08336 -12.90808 -12.70578 -12.43369 -12.19457 -12.16873 -11.91783 -11.78676 -11.56294 -11.41552 -11.25410 -11.17889 -10.94857 -10.86036 -10.66211 -10.54916 -10.54068 -10.39686 -9.78596 -9.70000 -9.35850 -9.17568 -8.88437 -8.56285 -8.26021 -8.15007 -8.10626 -5.82334 -3.82850 2.76897 2.78599 3.05442 3.39605 3.45929 3.46995 3.55486 3.85115 4.10046 4.31030 4.40662 4.58536 4.69552 4.72524 5.02980 5.10003 5.22024 5.22691 5.23375 5.29495 5.36871 5.38681 5.51771 5.55698 5.70812 5.72623 5.79742 5.90285 5.99288 6.07151 6.10561 6.17094 6.26903 6.34771 6.49663 6.57404 6.59244 6.74989 6.82411 6.96548 7.06727 7.34747 7.55713 7.66410 7.83322 8.02948 8.16162 8.39186 8.55148 8.55566 9.19593 9.25386 9.78565 11.29394 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.005662 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.927335 B = 4944.228267 C = 6714.448908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 C -0.152 4.152 4 C -0.161 4.161 5 N -0.736 5.736 6 C 0.749 3.251 7 O -0.553 6.553 8 N -0.657 5.657 9 C 0.096 3.904 10 C 0.097 3.903 11 C 0.121 3.879 12 C 0.070 3.930 13 O -0.366 6.366 14 C 0.049 3.951 15 C 0.483 3.517 16 O -0.530 6.530 17 N -0.573 5.573 18 C 0.119 3.881 19 C 0.015 3.985 20 C -0.508 4.508 21 H 0.046 0.954 22 C 0.072 3.928 23 N -0.883 5.883 24 Si 0.876 3.124 25 H -0.275 1.275 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.386 0.614 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.011 0.989 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.362 2.077 3.469 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.105 3.895 3 C -0.209 4.209 4 C -0.219 4.219 5 N -0.392 5.392 6 C 0.452 3.548 7 O -0.427 6.427 8 N -0.397 5.397 9 C -0.030 4.030 10 C 0.008 3.992 11 C -0.004 4.004 12 C -0.008 4.008 13 O -0.283 6.283 14 C -0.030 4.030 15 C 0.270 3.730 16 O -0.406 6.406 17 N -0.305 5.305 18 C -0.001 4.001 19 C -0.022 4.022 20 C -0.547 4.547 21 H 0.064 0.936 22 C -0.130 4.130 23 N -0.522 5.522 24 Si 0.704 3.296 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.202 1.202 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.218 0.782 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.146 0.854 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.029 0.971 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.039 1.668 2.748 18.323 hybrid contribution -0.426 1.390 -0.209 1.468 sum 17.613 3.058 2.539 18.056 Atomic orbital electron populations 1.22288 0.93020 1.05811 1.00833 1.20102 0.95090 0.90350 0.83938 1.22065 1.00715 0.95307 1.02862 1.22234 0.99874 1.03304 0.96466 1.45098 1.56992 1.10819 1.26256 1.14935 0.79284 0.81092 0.79443 1.90938 1.40519 1.66359 1.44922 1.48440 1.54096 1.14333 1.22866 1.23203 0.95554 0.99659 0.84538 1.21946 0.87438 0.96339 0.93443 1.23242 1.04050 0.85566 0.87569 1.22803 0.92023 0.91765 0.94230 1.88165 1.51209 1.31862 1.57114 1.22799 0.92142 0.96002 0.92080 1.20969 0.86646 0.83907 0.81489 1.90771 1.23298 1.61782 1.64782 1.47451 1.23318 1.38035 1.21655 1.21956 0.93554 0.87819 0.96741 1.19440 0.92520 0.96711 0.93570 1.20799 1.16596 0.92148 1.25122 0.93579 1.24805 0.97006 0.94770 0.96459 1.69952 1.31322 1.16627 1.34277 0.86885 0.79882 0.82735 0.80096 1.20121 1.21595 1.20243 0.92191 0.93561 0.88671 0.92584 0.91154 0.92034 0.90054 0.92476 0.93545 0.78199 0.88973 0.90181 0.88799 0.89582 0.86354 0.91344 0.89734 0.85373 0.91428 0.92019 0.94484 0.97104 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.40 37.16 0.31 -2.86 16 2 C 0.19 2.94 1.06 -131.82 -0.14 2.80 16 3 C -0.15 -1.74 8.59 37.16 0.32 -1.42 16 4 C -0.16 -2.39 8.40 37.16 0.31 -2.08 16 5 N -0.74 -11.41 5.11 -52.41 -0.27 -11.68 16 6 C 0.75 14.09 7.00 -86.92 -0.61 13.49 16 7 O -0.55 -13.17 12.90 5.28 0.07 -13.10 16 8 N -0.66 -10.29 1.98 -190.86 -0.38 -10.67 16 9 C 0.10 1.02 6.88 -8.11 -0.06 0.97 16 10 C 0.10 1.23 1.68 -133.01 -0.22 1.01 16 11 C 0.12 1.80 7.16 -8.23 -0.06 1.74 16 12 C 0.07 0.62 6.14 36.98 0.23 0.84 16 13 O -0.37 -4.24 10.84 -35.23 -0.38 -4.62 16 14 C 0.05 0.60 6.93 35.80 0.25 0.85 16 15 C 0.48 8.46 7.64 -11.40 -0.09 8.37 16 16 O -0.53 -11.72 16.49 5.56 0.09 -11.63 16 17 N -0.57 -9.82 2.69 -160.36 -0.43 -10.25 16 18 C 0.12 2.52 4.49 -4.04 -0.02 2.51 16 19 C 0.02 0.41 4.86 -27.88 -0.14 0.27 16 20 C -0.51 -14.55 9.11 -34.44 -0.31 -14.87 16 21 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 22 C 0.07 2.12 5.46 -17.82 -0.10 2.02 16 23 N -0.88 -27.82 13.29 55.43 0.74 -27.09 16 24 Si 0.88 22.55 29.54 -169.99 -5.02 17.53 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 2.34 6.16 -51.93 -0.32 2.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.49 6.16 -51.93 -0.32 1.17 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.39 4.82 8.19 -40.82 -0.33 4.49 16 38 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 0.85 7.08 -51.93 -0.37 0.48 16 40 H 0.09 1.85 6.82 -51.93 -0.35 1.50 16 41 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 42 H 0.12 0.71 7.84 -51.93 -0.41 0.30 16 43 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 46 H 0.07 1.56 7.36 -51.93 -0.38 1.18 16 47 H 0.06 1.21 5.36 -51.93 -0.28 0.93 16 48 H 0.04 1.04 4.28 -51.93 -0.22 0.82 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -38.30 388.80 -8.05 -46.35 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.01 Total: 5.65 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.32 Total: 13.64 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.34 Total: -59.68 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.22 Total: -29.35 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.30 -8.05 -46.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273616003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.993 kcal (2) G-P(sol) polarization free energy of solvation -38.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds