Wall clock time and date at job start Tue Mar 31 2020 22:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47529 * 2 1 4 4 C 1.53006 * 109.46649 * 240.00272 * 2 1 3 5 5 N 1.46500 * 109.47202 * 120.00795 * 2 1 3 6 6 C 1.34773 * 120.00431 * 59.99807 * 5 2 1 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 2 9 9 C 1.47164 * 136.00221 * 359.89760 * 8 6 5 10 10 C 1.53184 * 87.76603 * 153.42078 * 9 8 6 11 11 C 1.47157 * 136.00118 * 180.27497 * 8 6 5 12 12 C 1.52654 * 113.93819 * 139.44069 * 10 9 8 13 13 O 1.43407 * 108.27120 * 178.16141 * 12 10 9 14 14 C 1.42808 * 113.34810 * 294.60895 * 13 12 10 15 15 C 1.50280 * 110.54060 * 51.38943 * 14 13 12 16 16 O 1.21280 * 118.99452 * 161.41897 * 15 14 13 17 17 N 1.34314 * 122.00928 * 341.39005 * 15 14 13 18 18 C 1.46495 * 119.41433 * 182.04650 * 17 15 14 19 19 C 1.53001 * 109.47794 * 269.98484 * 18 17 15 20 20 C 1.50700 * 109.47236 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00151 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99926 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99843 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00351 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46950 * 89.99656 * 24 22 20 26 26 H 1.48493 * 109.47294 * 210.00256 * 24 22 20 27 27 H 1.48502 * 109.46591 * 330.00292 * 24 22 20 28 28 H 1.09001 * 109.46374 * 299.99353 * 1 2 3 29 29 H 1.08998 * 109.47098 * 59.99166 * 1 2 3 30 30 H 1.08994 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47533 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47164 * 300.01079 * 3 2 1 33 33 H 1.09003 * 109.46366 * 60.00235 * 3 2 1 34 34 H 1.09001 * 109.47528 * 300.00006 * 4 2 1 35 35 H 1.09003 * 109.47135 * 60.00032 * 4 2 1 36 36 H 1.09001 * 109.47123 * 179.97438 * 4 2 1 37 37 H 0.97000 * 119.99456 * 239.99369 * 5 2 1 38 38 H 1.09000 * 113.49017 * 268.12308 * 9 8 6 39 39 H 1.09001 * 113.48776 * 38.62286 * 9 8 6 40 40 H 1.09000 * 113.49178 * 321.37250 * 11 8 6 41 41 H 1.09006 * 113.49058 * 91.87380 * 11 8 6 42 42 H 1.09001 * 109.70508 * 297.86619 * 12 10 9 43 43 H 1.09001 * 109.70420 * 58.48604 * 12 10 9 44 44 H 1.08995 * 109.26438 * 291.11668 * 14 13 12 45 45 H 1.08999 * 109.26469 * 171.66017 * 14 13 12 46 46 H 1.09007 * 109.46736 * 29.98742 * 18 17 15 47 47 H 1.09003 * 109.47194 * 149.97889 * 18 17 15 48 48 H 1.09002 * 109.46721 * 299.99963 * 19 18 17 49 49 H 1.09000 * 109.46738 * 59.99501 * 19 18 17 50 50 H 0.96996 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0184 -0.6908 1.1961 6 6 1.6928 -1.9811 1.4093 7 8 0.9933 -2.5718 0.6091 8 7 2.1466 -2.6181 2.5069 9 6 2.9885 -2.2679 3.6620 10 6 2.2501 -3.3522 4.4529 11 6 2.0232 -3.9710 3.0726 12 6 3.1544 -4.1792 5.3632 13 8 2.3382 -5.1212 6.0723 14 6 1.4173 -4.5061 6.9740 15 6 0.6254 -3.4388 6.2724 16 8 -0.4126 -3.0552 6.7685 17 7 1.0325 -2.8965 5.1130 18 6 0.2393 -1.8277 4.5009 19 6 -0.8001 -2.4392 3.5593 20 6 -1.6165 -1.3397 2.9302 21 1 -1.4145 -0.3080 3.1775 22 6 -2.6213 -1.6509 2.0388 23 7 -2.8669 -2.9072 1.7372 24 14 -3.6337 -0.2882 1.2595 25 1 -2.9871 0.1479 -0.0043 26 1 -5.0002 -0.7913 0.9685 27 1 -3.7183 0.8622 2.1948 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6766 -1.7489 -1.2495 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2497 37 1 2.5761 -0.2194 1.8345 38 1 4.0459 -2.4847 3.5106 39 1 2.8137 -1.2595 4.0371 40 1 1.0310 -4.4049 2.9486 41 1 2.8211 -4.6460 2.7626 42 1 3.8927 -4.7110 4.7629 43 1 3.6598 -3.5239 6.0727 44 1 1.9684 -4.0594 7.8016 45 1 0.7356 -5.2623 7.3632 46 1 -0.2670 -1.2589 5.2808 47 1 0.8959 -1.1656 3.9365 48 1 -0.2938 -3.0080 2.7794 49 1 -1.4567 -3.1013 4.1237 50 1 -3.5740 -3.1262 1.1104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273616003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:06 Heat of formation + Delta-G solvation = -76.027149 kcal Electronic energy + Delta-G solvation = -33277.643999 eV Core-core repulsion = 29113.270524 eV Total energy + Delta-G solvation = -4164.373476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.66310 -40.88901 -39.65680 -38.47640 -37.14439 -36.08475 -34.79874 -33.18513 -31.95426 -30.81131 -28.81881 -28.17935 -28.12789 -27.37008 -27.10679 -25.88349 -23.40655 -22.92721 -21.57853 -20.32763 -19.46474 -19.00601 -18.79369 -18.40482 -17.51670 -17.21348 -16.82615 -16.66827 -16.44971 -16.03689 -15.89017 -15.59973 -15.32552 -15.03548 -14.76523 -14.49498 -14.42174 -14.33427 -14.13410 -14.11912 -13.72880 -13.28098 -13.15663 -12.97894 -12.95388 -12.92125 -12.77817 -12.71626 -12.48939 -12.45944 -12.15576 -11.97334 -11.90387 -11.80152 -11.75956 -11.35861 -11.29872 -10.78055 -10.51157 -10.34786 -9.97127 -9.72482 -9.37633 -8.17231 -6.25077 1.27260 1.30558 1.37951 1.41565 1.59364 1.80611 2.37463 2.48789 2.70490 3.00160 3.19569 3.24588 3.39628 3.70552 3.76242 3.97668 4.09613 4.13805 4.21332 4.27782 4.38629 4.43254 4.52641 4.57763 4.61666 4.66024 4.73400 4.75909 4.78905 4.80753 4.83985 4.91154 4.93433 4.97496 5.05085 5.10309 5.20358 5.23809 5.46899 5.49022 5.60466 5.65467 5.81025 5.87724 5.91462 6.20754 6.36446 6.45490 6.86618 7.05071 7.31404 7.41884 7.90415 8.95290 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.005662 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.927335 B = 4944.228267 C = 6714.448908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.188 3.812 3 C -0.141 4.141 4 C -0.152 4.152 5 N -0.724 5.724 6 C 0.738 3.262 7 O -0.616 6.616 8 N -0.671 5.671 9 C 0.109 3.891 10 C 0.093 3.907 11 C 0.112 3.888 12 C 0.074 3.926 13 O -0.374 6.374 14 C 0.065 3.935 15 C 0.471 3.529 16 O -0.590 6.590 17 N -0.577 5.577 18 C 0.141 3.859 19 C 0.034 3.966 20 C -0.513 4.513 21 H 0.049 0.951 22 C 0.018 3.982 23 N -0.927 5.927 24 Si 0.937 3.063 25 H -0.261 1.261 26 H -0.290 1.290 27 H -0.263 1.263 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.403 0.597 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.130 0.870 42 H 0.160 0.840 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.020 0.980 49 H -0.050 1.050 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.122 4.002 4.301 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.102 3.898 3 C -0.199 4.199 4 C -0.211 4.211 5 N -0.380 5.380 6 C 0.442 3.558 7 O -0.495 6.495 8 N -0.410 5.410 9 C -0.013 4.013 10 C 0.005 3.995 11 C -0.013 4.013 12 C -0.003 4.003 13 O -0.292 6.292 14 C -0.015 4.015 15 C 0.260 3.740 16 O -0.471 6.471 17 N -0.308 5.308 18 C 0.019 3.981 19 C -0.004 4.004 20 C -0.552 4.552 21 H 0.068 0.932 22 C -0.180 4.180 23 N -0.567 5.567 24 Si 0.762 3.238 25 H -0.186 1.186 26 H -0.216 1.216 27 H -0.187 1.187 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.239 0.761 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.147 0.853 42 H 0.178 0.822 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.038 0.962 49 H -0.032 1.032 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 22.895 3.613 3.629 23.461 hybrid contribution -1.925 0.702 -0.486 2.106 sum 20.970 4.314 3.143 21.639 Atomic orbital electron populations 1.22173 0.96801 1.01886 1.00431 1.20201 0.92169 0.93159 0.84228 1.21996 1.02521 0.91722 1.03626 1.22128 1.01268 1.00789 0.96868 1.44975 1.56607 1.09747 1.26699 1.15277 0.78957 0.81863 0.79724 1.90907 1.43223 1.67911 1.47501 1.48558 1.54575 1.14926 1.22983 1.23560 0.97510 0.99325 0.80901 1.22411 0.86284 0.97653 0.93145 1.23481 1.01951 0.86119 0.89731 1.23228 0.90871 0.91820 0.94427 1.88176 1.51061 1.32750 1.57214 1.22760 0.92245 0.94184 0.92268 1.22222 0.86335 0.84187 0.81225 1.90736 1.26101 1.63771 1.66488 1.47480 1.24530 1.37045 1.21717 1.21316 0.93035 0.88810 0.94945 1.19155 0.92688 0.95201 0.93308 1.21132 1.16699 0.92622 1.24729 0.93227 1.25658 0.98369 0.96982 0.97015 1.70125 1.32161 1.19168 1.35238 0.85899 0.77963 0.80070 0.79857 1.18636 1.21594 1.18685 0.94096 0.92271 0.94247 0.89582 0.89902 0.91848 0.94305 0.91030 0.91029 0.76127 0.82832 0.89467 0.95374 0.85270 0.82236 0.87386 0.85476 0.85097 0.93838 0.90019 0.96170 1.03157 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.23 8.40 71.98 0.60 -5.63 16 2 C 0.19 5.61 1.06 3.61 0.00 5.62 16 3 C -0.14 -2.75 8.59 71.98 0.62 -2.13 16 4 C -0.15 -4.42 8.40 71.98 0.60 -3.81 16 5 N -0.72 -21.68 5.11 -438.00 -2.24 -23.92 16 6 C 0.74 28.36 7.00 179.06 1.25 29.61 16 7 O -0.62 -31.51 12.90 -4.01 -0.05 -31.56 16 8 N -0.67 -20.48 1.98 -876.01 -1.74 -22.22 16 9 C 0.11 1.87 6.88 83.38 0.57 2.44 16 10 C 0.09 2.10 1.68 3.91 0.01 2.11 16 11 C 0.11 3.30 7.16 83.31 0.60 3.90 16 12 C 0.07 0.89 6.14 71.87 0.44 1.33 16 13 O -0.37 -7.27 10.84 -148.98 -1.62 -8.89 16 14 C 0.06 1.42 6.93 71.10 0.49 1.92 16 15 C 0.47 16.64 7.64 87.60 0.67 17.31 16 16 O -0.59 -27.53 16.49 -3.03 -0.05 -27.58 16 17 N -0.58 -19.88 2.69 -779.90 -2.10 -21.98 16 18 C 0.14 6.23 4.49 86.38 0.39 6.62 16 19 C 0.03 1.98 4.86 29.85 0.15 2.12 16 20 C -0.51 -31.22 9.11 25.60 0.23 -30.99 16 21 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 22 C 0.02 1.12 5.46 84.65 0.46 1.58 16 23 N -0.93 -62.65 13.29 21.45 0.28 -62.37 16 24 Si 0.94 48.31 29.54 68.60 2.03 50.34 16 25 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 27 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 2.04 6.16 -2.39 -0.01 2.03 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.47 6.16 -2.39 -0.01 1.46 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.40 8.91 8.19 -92.71 -0.76 8.16 16 38 H 0.15 0.92 8.09 -2.39 -0.02 0.90 16 39 H 0.09 1.44 7.08 -2.39 -0.02 1.42 16 40 H 0.03 1.20 6.82 -2.39 -0.02 1.18 16 41 H 0.13 2.62 7.89 -2.38 -0.02 2.60 16 42 H 0.16 0.72 7.84 -2.39 -0.02 0.70 16 43 H 0.11 0.61 8.13 -2.39 -0.02 0.59 16 44 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.04 2.11 7.36 -2.38 -0.02 2.10 16 47 H 0.08 3.23 5.36 -2.39 -0.01 3.22 16 48 H 0.02 1.24 4.28 -2.39 -0.01 1.23 16 49 H -0.05 -3.44 8.14 -2.39 -0.02 -3.46 16 50 H 0.25 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -99.92 388.80 1.81 -98.11 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.20 Total: 18.05 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 7.09 Total: 32.00 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -5.79 Total: -130.48 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -1.72 Total: -68.02 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -99.92 1.81 -98.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273616003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.086 kcal (2) G-P(sol) polarization free energy of solvation -99.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds