Wall clock time and date at job start Wed Apr 1 2020 00:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46804 * 2 1 4 4 H 1.09000 * 109.47362 * 305.00551 * 3 2 1 5 5 C 1.50702 * 109.47398 * 184.99717 * 3 2 1 6 6 N 1.34777 * 119.99442 * 87.82784 * 5 3 2 7 7 O 1.21274 * 120.00317 * 267.83146 * 5 3 2 8 8 N 1.46904 * 109.46964 * 65.00235 * 3 2 1 9 9 C 1.48579 * 111.00229 * 50.85074 * 8 3 2 10 10 C 1.55042 * 103.28900 * 159.44031 * 9 8 3 11 11 C 1.54119 * 102.80656 * 322.98183 * 10 9 8 12 12 C 1.48036 * 110.99996 * 168.26891 * 8 3 2 13 13 C 1.52435 * 110.12474 * 140.95356 * 11 10 9 14 14 N 1.46205 * 109.95095 * 169.22374 * 13 11 10 15 15 C 1.46497 * 118.77431 * 162.48695 * 14 13 11 16 16 C 1.52998 * 109.47576 * 269.98443 * 15 14 13 17 17 C 1.50696 * 109.47421 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00150 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00147 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00209 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47173 * 90.00300 * 21 19 17 23 23 H 1.48492 * 109.47587 * 210.00442 * 21 19 17 24 24 H 1.48506 * 109.47289 * 330.00531 * 21 19 17 25 25 C 1.33846 * 122.45167 * 342.47207 * 14 13 11 26 26 O 1.21278 * 118.69620 * 182.37732 * 25 14 13 27 27 C 1.50297 * 122.60532 * 2.40151 * 25 14 13 28 28 O 1.42581 * 110.05077 * 262.52367 * 11 10 9 29 29 H 1.09002 * 109.47652 * 59.99813 * 1 2 3 30 30 H 1.08999 * 109.47293 * 299.99375 * 1 2 3 31 31 H 1.09007 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47423 * 119.99542 * 2 1 3 33 33 H 1.08999 * 109.47293 * 240.00625 * 2 1 3 34 34 H 0.96997 * 120.00329 * 0.02562 * 6 5 3 35 35 H 0.97003 * 120.00023 * 179.97438 * 6 5 3 36 36 H 1.08993 * 110.65937 * 277.89505 * 9 8 3 37 37 H 1.09007 * 110.65431 * 40.99242 * 9 8 3 38 38 H 1.08996 * 110.74685 * 204.65850 * 10 9 8 39 39 H 1.08998 * 110.89974 * 81.38148 * 10 9 8 40 40 H 1.08998 * 109.97859 * 333.61149 * 12 8 3 41 41 H 1.08998 * 109.97730 * 94.89843 * 12 8 3 42 42 H 1.08995 * 109.39513 * 289.36991 * 13 11 10 43 43 H 1.08998 * 109.39378 * 49.08222 * 13 11 10 44 44 H 1.09003 * 109.46989 * 29.98377 * 15 14 13 45 45 H 1.08996 * 109.47159 * 149.98160 * 15 14 13 46 46 H 1.09003 * 109.46908 * 299.99984 * 16 15 14 47 47 H 1.08996 * 109.47108 * 59.99686 * 16 15 14 48 48 H 0.97001 * 120.00424 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.40133 * 223.41902 * 27 25 14 50 50 H 1.09003 * 109.33112 * 103.63921 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5418 1.4445 -0.1238 6 7 4.1174 1.4350 -1.3424 7 8 4.2324 1.4546 0.8731 8 7 1.6512 2.0993 1.2553 9 6 2.0381 1.2751 2.4294 10 6 2.0589 2.2997 3.5928 11 6 2.6188 3.5685 2.9206 12 6 2.3559 3.3909 1.4186 13 6 1.8951 4.8031 3.4456 14 7 2.5897 6.0126 3.0074 15 6 1.8782 7.2922 3.0583 16 6 1.1526 7.5255 1.7317 17 6 0.4201 8.8414 1.7844 18 1 0.4677 9.4507 2.6748 19 6 -0.3100 9.2681 0.6954 20 7 -0.3676 8.5265 -0.3891 21 14 -1.2185 10.8990 0.7609 22 1 -0.3269 11.9822 0.2741 23 1 -2.4263 10.8277 -0.1000 24 1 -1.6245 11.1836 2.1607 25 6 3.8517 5.9945 2.5617 26 8 4.3766 7.0443 2.2564 27 6 4.6438 4.7247 2.4240 28 8 4.0182 3.6772 3.1707 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.5651 1.4273 -2.1397 35 1 5.0842 1.4367 -1.4221 36 1 1.2967 0.4979 2.6147 37 1 3.0262 0.8384 2.2839 38 1 2.7190 1.9630 4.3921 39 1 1.0529 2.4763 3.9734 40 1 3.3004 3.3711 0.8749 41 1 1.7312 4.2050 1.0510 42 1 0.8741 4.8138 3.0641 43 1 1.8724 4.7735 4.5350 44 1 1.1520 7.2720 3.8710 45 1 2.5918 8.0982 3.2288 46 1 1.8788 7.5457 0.9191 47 1 0.4389 6.7194 1.5613 48 1 -0.8815 8.8265 -1.1551 49 1 5.6536 4.8851 2.8017 50 1 4.6913 4.4412 1.3726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273703120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:03 Heat of formation + Delta-G solvation = -127.831861 kcal Electronic energy + Delta-G solvation = -32230.876565 eV Core-core repulsion = 28064.256668 eV Total energy + Delta-G solvation = -4166.619897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.50047 -41.27742 -39.51679 -37.70886 -37.04624 -35.39573 -35.09938 -34.33063 -32.26837 -31.81654 -30.08554 -29.08650 -27.92816 -26.52957 -26.13355 -23.58742 -23.52822 -22.75254 -21.73788 -20.83447 -19.53381 -18.89705 -18.69675 -18.52485 -18.07793 -17.54658 -17.17797 -16.92307 -16.49011 -16.34759 -15.89145 -15.71936 -15.57704 -15.33134 -14.93612 -14.68766 -14.62340 -14.44966 -14.30795 -14.14948 -13.69726 -13.51871 -13.25319 -13.11398 -12.88061 -12.86934 -12.76015 -12.59089 -12.44218 -12.12537 -12.09767 -11.92664 -11.89415 -11.83524 -11.62986 -11.46672 -11.35861 -11.27151 -10.63649 -10.59880 -10.41762 -9.71650 -9.32440 -8.23446 -6.35714 1.37624 1.39936 1.41471 1.52192 1.52524 1.83808 2.39727 2.48959 2.55781 2.87595 3.10215 3.17353 3.42033 3.52243 3.68257 3.90347 3.92331 3.99100 4.09586 4.17797 4.29350 4.32087 4.38421 4.44015 4.47849 4.57655 4.60441 4.67134 4.68898 4.70309 4.88252 4.88877 4.95596 4.99852 5.15418 5.15463 5.20911 5.27376 5.42515 5.53050 5.53303 5.61462 5.77313 5.85597 5.87869 5.90518 6.15220 6.37154 6.38893 6.77955 6.98815 7.27438 7.33655 8.88770 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.003599 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.447219 B = 7778.300387 C = 8713.325554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.050 3.950 4 H 0.109 0.891 5 C 0.483 3.517 6 N -0.840 5.840 7 O -0.564 6.564 8 N -0.481 5.481 9 C 0.025 3.975 10 C -0.097 4.097 11 C 0.098 3.902 12 C 0.011 3.989 13 C 0.095 3.905 14 N -0.596 5.596 15 C 0.126 3.874 16 C 0.031 3.969 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.277 1.277 23 H -0.278 1.278 24 H -0.258 1.258 25 C 0.473 3.527 26 O -0.591 6.591 27 C 0.065 3.935 28 O -0.350 6.350 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.415 0.585 35 H 0.404 0.596 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.056 0.944 46 H -0.027 1.027 47 H 0.001 0.999 48 H 0.264 0.736 49 H 0.144 0.856 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -23.299 1.664 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.062 4.062 4 H 0.127 0.873 5 C 0.267 3.733 6 N -0.404 5.404 7 O -0.443 6.443 8 N -0.205 5.205 9 C -0.102 4.102 10 C -0.135 4.135 11 C 0.057 3.943 12 C -0.117 4.117 13 C -0.028 4.028 14 N -0.327 5.327 15 C 0.004 3.996 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.570 5.570 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.203 1.203 24 H -0.182 1.182 25 C 0.262 3.738 26 O -0.473 6.473 27 C -0.014 4.014 28 O -0.268 6.268 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.246 0.754 35 H 0.235 0.765 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.075 0.925 46 H -0.009 1.009 47 H 0.020 0.980 48 H 0.073 0.927 49 H 0.162 0.838 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.412 -22.845 2.193 23.202 hybrid contribution 0.689 1.389 -1.312 2.031 sum 4.101 -21.457 0.881 21.863 Atomic orbital electron populations 1.21664 0.93557 1.02105 1.02625 1.21533 0.97887 0.91056 1.03646 1.22327 0.88903 0.99503 0.95499 0.87322 1.22125 0.92757 0.74621 0.83820 1.43979 1.12068 1.76114 1.08257 1.90751 1.65713 1.50642 1.37163 1.65247 1.51273 1.02033 1.01916 1.23593 1.01919 0.96312 0.88348 1.22489 1.02387 0.90465 0.98139 1.22304 0.81447 0.96103 0.94427 1.23461 0.97804 0.93799 0.96654 1.22331 0.97196 0.81955 1.01296 1.47762 1.12520 1.09868 1.62555 1.21548 0.94861 0.83952 0.99267 1.19108 0.93492 0.96013 0.92040 1.21519 1.30473 1.05474 1.00892 0.91791 1.25957 0.97355 1.01299 0.94783 1.70102 1.42220 1.39730 1.04936 0.85405 0.77844 0.78722 0.78819 1.20324 1.20305 1.18230 1.21521 0.82797 0.92462 0.77045 1.90699 1.70055 1.34796 1.51724 1.22638 0.97641 0.82241 0.98889 1.88116 1.21013 1.52038 1.65646 0.92674 0.92342 0.91416 0.91055 0.89466 0.75373 0.76489 0.87725 0.91095 0.88422 0.87244 0.92815 0.92169 0.89114 0.88375 0.89195 0.92547 1.00894 0.98020 0.92689 0.83844 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.80 71.98 0.71 -1.12 16 2 C -0.10 -1.36 5.03 30.59 0.15 -1.20 16 3 C 0.05 0.94 2.45 44.17 0.11 1.05 16 4 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 5 C 0.48 10.00 5.70 87.66 0.50 10.50 16 6 N -0.84 -11.41 8.87 -173.54 -1.54 -12.95 16 7 O -0.56 -15.63 13.36 -3.01 -0.04 -15.67 16 8 N -0.48 -11.03 4.85 -862.48 -4.18 -15.22 16 9 C 0.02 0.50 4.71 86.68 0.41 0.91 16 10 C -0.10 -1.95 6.32 31.67 0.20 -1.75 16 11 C 0.10 2.66 0.96 -10.43 -0.01 2.65 16 12 C 0.01 0.33 4.79 86.26 0.41 0.74 16 13 C 0.09 2.82 4.99 86.25 0.43 3.25 16 14 N -0.60 -23.21 2.81 -825.59 -2.32 -25.53 16 15 C 0.13 5.67 5.26 86.38 0.45 6.13 16 16 C 0.03 1.74 5.29 29.85 0.16 1.90 16 17 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 18 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 0.25 5.46 84.65 0.46 0.72 16 20 N -0.93 -57.38 13.29 21.44 0.28 -57.09 16 21 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.47 19.37 7.43 87.68 0.65 20.02 16 26 O -0.59 -29.45 16.34 -3.02 -0.05 -29.49 16 27 C 0.07 2.10 6.42 71.11 0.46 2.56 16 28 O -0.35 -10.50 10.34 -148.98 -1.54 -12.04 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.91 7.73 -2.39 -0.02 0.89 16 31 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.99 6.46 -2.39 -0.02 0.98 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.42 3.27 8.83 -92.71 -0.82 2.45 16 35 H 0.40 4.99 8.93 -92.71 -0.83 4.16 16 36 H 0.10 1.60 7.56 -2.39 -0.02 1.59 16 37 H 0.07 1.69 5.39 -2.38 -0.01 1.67 16 38 H 0.10 1.81 8.06 -2.39 -0.02 1.79 16 39 H 0.11 1.80 7.85 -2.39 -0.02 1.78 16 40 H 0.05 1.70 3.43 -2.39 -0.01 1.69 16 41 H 0.06 2.16 7.61 -2.39 -0.02 2.15 16 42 H 0.09 2.77 7.98 -2.39 -0.02 2.75 16 43 H 0.10 2.43 8.11 -2.39 -0.02 2.41 16 44 H 0.09 3.58 8.04 -2.39 -0.02 3.56 16 45 H 0.06 2.77 7.22 -2.39 -0.02 2.75 16 46 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 47 H 0.00 0.08 8.14 -2.39 -0.02 0.07 16 48 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 49 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 50 H 0.08 2.66 6.53 -2.39 -0.02 2.65 16 Total: -1.00 -80.27 387.23 -2.71 -82.98 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.67 Total: 23.40 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 5.32 Total: 14.70 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -7.76 Total: -110.78 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -1.63 Total: -57.20 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -80.27 -2.71 -82.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273703120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.850 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds