Wall clock time and date at job start Wed Apr 1 2020 00:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47055 * 2 1 4 4 H 1.08992 * 109.47398 * 54.99239 * 3 2 1 5 5 C 1.50701 * 109.47303 * 174.99696 * 3 2 1 6 6 N 1.34774 * 120.00103 * 272.15722 * 5 3 2 7 7 O 1.21281 * 120.00054 * 92.15541 * 5 3 2 8 8 N 1.46903 * 109.46721 * 294.99463 * 3 2 1 9 9 C 1.48578 * 111.00244 * 308.40520 * 8 3 2 10 10 C 1.55039 * 103.29062 * 200.55914 * 9 8 3 11 11 C 1.54117 * 102.81114 * 37.01184 * 10 9 8 12 12 C 1.48038 * 110.99890 * 190.99416 * 8 3 2 13 13 C 1.52443 * 110.12310 * 97.57544 * 11 10 9 14 14 N 1.46210 * 109.93274 * 169.30706 * 13 11 10 15 15 C 1.46500 * 118.77118 * 162.40484 * 14 13 11 16 16 C 1.53000 * 109.47021 * 90.00202 * 15 14 13 17 17 C 1.50698 * 109.46764 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00365 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99492 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00623 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99814 * 179.72510 * 19 17 16 22 22 H 1.48503 * 109.46943 * 59.99844 * 21 19 17 23 23 H 1.48498 * 109.47136 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46854 * 299.99904 * 21 19 17 25 25 C 1.33845 * 122.44557 * 342.68508 * 14 13 11 26 26 O 1.21279 * 118.69097 * 182.13426 * 25 14 13 27 27 C 1.50280 * 122.62244 * 1.90278 * 25 14 13 28 28 O 1.42579 * 110.07425 * 219.15607 * 11 10 9 29 29 H 1.09006 * 109.47125 * 60.00940 * 1 2 3 30 30 H 1.09007 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47595 * 300.00270 * 1 2 3 32 32 H 1.08997 * 109.47750 * 239.99236 * 2 1 3 33 33 H 1.09001 * 109.46807 * 119.99426 * 2 1 3 34 34 H 0.97001 * 119.99888 * 359.97438 * 6 5 3 35 35 H 0.97000 * 120.00240 * 180.02562 * 6 5 3 36 36 H 1.09010 * 110.65314 * 319.00646 * 9 8 3 37 37 H 1.08994 * 110.65669 * 82.10482 * 9 8 3 38 38 H 1.09002 * 110.74734 * 278.68644 * 10 9 8 39 39 H 1.09000 * 110.74951 * 155.34075 * 10 9 8 40 40 H 1.08995 * 109.97847 * 26.39798 * 12 8 3 41 41 H 1.09000 * 110.00801 * 265.12857 * 12 8 3 42 42 H 1.08998 * 109.39510 * 49.16398 * 13 11 10 43 43 H 1.09001 * 109.39098 * 289.44689 * 13 11 10 44 44 H 1.08999 * 109.47735 * 329.99760 * 15 14 13 45 45 H 1.09007 * 109.46533 * 209.99506 * 15 14 13 46 46 H 1.08998 * 109.47238 * 59.99804 * 16 15 14 47 47 H 1.09003 * 109.47143 * 299.99520 * 16 15 14 48 48 H 0.96995 * 120.00716 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.53572 * 223.76712 * 27 25 14 50 50 H 1.09001 * 109.13750 * 104.02199 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 7 4.1175 1.4352 1.3425 7 8 4.2326 1.4541 -0.8730 8 7 1.6514 2.0991 -1.2553 9 6 2.0541 1.2833 -2.4299 10 6 2.0704 2.3120 -3.5898 11 6 2.6121 3.5847 -2.9101 12 6 2.3428 3.3989 -1.4102 13 6 4.1081 3.7215 -3.1694 14 7 4.5683 5.0435 -2.7472 15 6 6.0025 5.2574 -2.5384 16 6 6.6444 5.7233 -3.8468 17 6 8.1195 5.9439 -3.6319 18 1 8.5556 5.7697 -2.6593 19 6 8.9123 6.3691 -4.6767 20 7 8.3814 6.5818 -5.8609 21 14 10.7396 6.6500 -4.4084 22 1 11.3758 5.3825 -3.9681 23 1 11.3628 7.1010 -5.6786 24 1 10.9327 7.6893 -3.3654 25 6 3.7275 6.0639 -2.5391 26 8 4.1866 7.1424 -2.2278 27 6 2.2376 5.9278 -2.6807 28 8 1.9228 4.7325 -3.4003 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.5651 1.4277 2.1398 35 1 5.0842 1.4368 1.4223 36 1 3.0462 0.8571 -2.2801 37 1 1.3225 0.4986 -2.6221 38 1 1.0635 2.4778 -3.9729 39 1 2.7389 1.9854 -4.3863 40 1 3.2843 3.3876 -0.8613 41 1 1.7077 4.2052 -1.0433 42 1 4.3042 3.5928 -4.2338 43 1 4.6440 2.9556 -2.6088 44 1 6.4663 4.3244 -2.2182 45 1 6.1485 6.0178 -1.7712 46 1 6.1807 6.6563 -4.1670 47 1 6.4984 4.9629 -4.6141 48 1 8.9390 6.8813 -6.5958 49 1 1.8425 6.7893 -3.2190 50 1 1.7871 5.8827 -1.6892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273703121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:07 Heat of formation + Delta-G solvation = -98.025052 kcal Electronic energy + Delta-G solvation = -32078.883855 eV Core-core repulsion = 27913.556479 eV Total energy + Delta-G solvation = -4165.327376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48765 -40.15899 -38.27901 -36.77887 -35.37803 -34.64911 -33.65835 -32.95272 -31.17877 -30.13297 -28.87640 -27.84333 -26.88622 -25.26680 -24.44029 -22.90412 -22.18667 -21.54846 -20.35828 -20.10606 -18.32659 -17.86577 -17.50876 -17.31902 -16.59362 -16.20149 -15.91092 -15.54377 -15.29985 -15.21041 -14.95975 -14.48137 -14.26781 -14.26228 -13.88188 -13.70435 -13.44928 -12.87217 -12.76385 -12.59356 -12.43088 -12.29878 -12.20037 -12.13958 -11.80652 -11.62630 -11.51608 -11.32416 -11.24190 -11.11353 -10.90954 -10.80952 -10.60676 -10.52342 -10.17927 -9.97665 -9.81996 -9.76423 -9.25887 -8.89150 -8.54320 -8.30450 -7.99862 -5.95515 -3.98615 2.22512 2.98201 3.14925 3.28254 3.36570 3.40408 3.43515 3.56294 3.71647 4.25752 4.41220 4.44755 4.49631 4.55661 4.63327 4.64872 4.92273 4.95611 5.09117 5.12877 5.23884 5.28267 5.34100 5.40150 5.48444 5.51713 5.56616 5.58419 5.70343 5.72627 5.75170 5.83873 5.98635 6.00120 6.03728 6.17977 6.42026 6.48109 6.56673 6.57025 6.82052 6.92792 6.95603 7.04898 7.67233 7.77502 7.90575 8.02216 8.05274 8.40975 8.59879 9.07555 9.64462 11.16035 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003221 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.115715 B = 8691.038041 C = 9507.925035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.055 3.945 4 H 0.104 0.896 5 C 0.488 3.512 6 N -0.854 5.854 7 O -0.529 6.529 8 N -0.480 5.480 9 C 0.017 3.983 10 C -0.103 4.103 11 C 0.101 3.899 12 C 0.006 3.994 13 C 0.095 3.905 14 N -0.593 5.593 15 C 0.115 3.885 16 C 0.016 3.984 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.477 3.523 26 O -0.542 6.542 27 C 0.048 3.952 28 O -0.356 6.356 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.022 0.978 47 H 0.015 0.985 48 H 0.261 0.739 49 H 0.128 0.872 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.995 -16.346 14.540 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.058 4.058 4 H 0.122 0.878 5 C 0.272 3.728 6 N -0.417 5.417 7 O -0.406 6.406 8 N -0.203 5.203 9 C -0.110 4.110 10 C -0.141 4.141 11 C 0.060 3.940 12 C -0.122 4.122 13 C -0.029 4.029 14 N -0.325 5.325 15 C -0.005 4.005 16 C -0.022 4.022 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C 0.264 3.736 26 O -0.420 6.420 27 C -0.031 4.031 28 O -0.274 6.274 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.228 0.772 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.040 0.960 47 H 0.033 0.967 48 H 0.071 0.929 49 H 0.146 0.854 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.137 -15.659 13.626 28.233 hybrid contribution 2.321 0.168 0.791 2.458 sum -16.816 -15.491 14.418 27.030 Atomic orbital electron populations 1.21684 0.93905 1.01501 1.03065 1.21551 0.97751 0.92732 1.03028 1.22187 0.89303 0.98206 0.96153 0.87809 1.21943 0.92334 0.74973 0.83562 1.44099 1.11741 1.77513 1.08376 1.90719 1.65081 1.48786 1.35983 1.65256 1.51814 1.02633 1.00643 1.23656 1.02255 0.96262 0.88787 1.22418 1.02898 0.91171 0.97622 1.22182 0.91362 0.87566 0.92874 1.23609 0.98691 0.92941 0.96938 1.22149 0.93228 0.85793 1.01748 1.47691 1.08982 1.10027 1.65836 1.21921 0.76283 1.00566 1.01768 1.19333 0.94989 0.96899 0.90974 1.21050 0.92979 1.45569 0.96280 0.92678 1.24998 0.98704 0.95414 0.95169 1.69963 1.35775 1.46278 1.01195 0.86622 0.85167 0.78596 0.77390 1.20242 1.21257 1.20185 1.20745 0.89796 0.84608 0.78486 1.90743 1.77590 1.25439 1.48248 1.22831 0.91819 0.89372 0.99123 1.88103 1.66795 1.15311 1.57214 0.91096 0.92790 0.92710 0.90716 0.91280 0.77163 0.76761 0.89438 0.89740 0.89143 0.89543 0.91596 0.89593 0.90722 0.88463 0.91926 0.90919 0.95975 0.96674 0.92925 0.85429 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.80 37.16 0.36 -0.40 16 2 C -0.11 -0.66 5.04 -26.73 -0.13 -0.79 16 3 C 0.05 0.41 2.43 -68.86 -0.17 0.24 16 4 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 5 C 0.49 4.56 5.70 -10.99 -0.06 4.50 16 6 N -0.85 -5.27 8.87 31.22 0.28 -4.99 16 7 O -0.53 -7.02 11.76 5.56 0.07 -6.95 16 8 N -0.48 -4.62 4.85 -223.97 -1.09 -5.70 16 9 C 0.02 0.17 4.73 -1.82 -0.01 0.16 16 10 C -0.10 -1.15 6.34 -25.07 -0.16 -1.30 16 11 C 0.10 1.38 0.96 -90.05 -0.09 1.29 16 12 C 0.01 0.07 4.84 -2.93 -0.01 0.06 16 13 C 0.09 1.58 5.12 -4.48 -0.02 1.55 16 14 N -0.59 -11.83 2.80 -174.70 -0.49 -12.32 16 15 C 0.12 2.67 5.23 -4.04 -0.02 2.65 16 16 C 0.02 0.45 5.29 -27.88 -0.15 0.30 16 17 C -0.52 -15.50 9.11 -34.44 -0.31 -15.81 16 18 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -28.09 13.29 55.43 0.74 -27.35 16 21 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.48 9.49 7.42 -11.60 -0.09 9.40 16 26 O -0.54 -12.94 16.37 5.56 0.09 -12.85 16 27 C 0.05 0.71 6.43 35.80 0.23 0.94 16 28 O -0.36 -5.30 10.35 -35.23 -0.36 -5.66 16 29 H 0.07 0.46 7.75 -51.93 -0.40 0.06 16 30 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.51 6.49 -51.93 -0.34 0.17 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 35 H 0.40 2.54 8.93 -40.82 -0.36 2.17 16 36 H 0.09 1.00 5.34 -51.92 -0.28 0.72 16 37 H 0.08 0.67 7.58 -51.93 -0.39 0.28 16 38 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 40 H 0.07 0.90 4.91 -51.93 -0.25 0.65 16 41 H 0.09 1.01 6.08 -51.93 -0.32 0.70 16 42 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 43 H 0.10 1.63 6.17 -51.93 -0.32 1.31 16 44 H 0.06 1.36 7.94 -51.93 -0.41 0.95 16 45 H 0.07 1.77 7.29 -51.93 -0.38 1.39 16 46 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.01 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 50 H 0.08 1.03 6.48 -51.93 -0.34 0.69 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -37.22 383.59 -8.62 -45.84 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.88 Total: 2.29 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.73 Total: 4.45 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.56 Total: -50.36 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.21 Total: -25.47 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.22 -8.62 -45.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273703121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.185 kcal (2) G-P(sol) polarization free energy of solvation -37.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds