Wall clock time and date at job start Wed Apr 1 2020 00:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47055 * 2 1 4 4 H 1.08992 * 109.47398 * 54.99239 * 3 2 1 5 5 C 1.50701 * 109.47303 * 174.99696 * 3 2 1 6 6 N 1.34774 * 120.00103 * 272.15722 * 5 3 2 7 7 O 1.21281 * 120.00054 * 92.15541 * 5 3 2 8 8 N 1.46903 * 109.46721 * 294.99463 * 3 2 1 9 9 C 1.48578 * 111.00244 * 308.40520 * 8 3 2 10 10 C 1.55039 * 103.29062 * 200.55914 * 9 8 3 11 11 C 1.54117 * 102.81114 * 37.01184 * 10 9 8 12 12 C 1.48038 * 110.99890 * 190.99416 * 8 3 2 13 13 C 1.52443 * 110.12310 * 97.57544 * 11 10 9 14 14 N 1.46210 * 109.93274 * 169.30706 * 13 11 10 15 15 C 1.46500 * 118.77118 * 162.40484 * 14 13 11 16 16 C 1.53000 * 109.47021 * 90.00202 * 15 14 13 17 17 C 1.50698 * 109.46764 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00365 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99492 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00623 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99814 * 179.72510 * 19 17 16 22 22 H 1.48503 * 109.46943 * 59.99844 * 21 19 17 23 23 H 1.48498 * 109.47136 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46854 * 299.99904 * 21 19 17 25 25 C 1.33845 * 122.44557 * 342.68508 * 14 13 11 26 26 O 1.21279 * 118.69097 * 182.13426 * 25 14 13 27 27 C 1.50280 * 122.62244 * 1.90278 * 25 14 13 28 28 O 1.42579 * 110.07425 * 219.15607 * 11 10 9 29 29 H 1.09006 * 109.47125 * 60.00940 * 1 2 3 30 30 H 1.09007 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47595 * 300.00270 * 1 2 3 32 32 H 1.08997 * 109.47750 * 239.99236 * 2 1 3 33 33 H 1.09001 * 109.46807 * 119.99426 * 2 1 3 34 34 H 0.97001 * 119.99888 * 359.97438 * 6 5 3 35 35 H 0.97000 * 120.00240 * 180.02562 * 6 5 3 36 36 H 1.09010 * 110.65314 * 319.00646 * 9 8 3 37 37 H 1.08994 * 110.65669 * 82.10482 * 9 8 3 38 38 H 1.09002 * 110.74734 * 278.68644 * 10 9 8 39 39 H 1.09000 * 110.74951 * 155.34075 * 10 9 8 40 40 H 1.08995 * 109.97847 * 26.39798 * 12 8 3 41 41 H 1.09000 * 110.00801 * 265.12857 * 12 8 3 42 42 H 1.08998 * 109.39510 * 49.16398 * 13 11 10 43 43 H 1.09001 * 109.39098 * 289.44689 * 13 11 10 44 44 H 1.08999 * 109.47735 * 329.99760 * 15 14 13 45 45 H 1.09007 * 109.46533 * 209.99506 * 15 14 13 46 46 H 1.08998 * 109.47238 * 59.99804 * 16 15 14 47 47 H 1.09003 * 109.47143 * 299.99520 * 16 15 14 48 48 H 0.96995 * 120.00716 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.53572 * 223.76712 * 27 25 14 50 50 H 1.09001 * 109.13750 * 104.02199 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 7 4.1175 1.4352 1.3425 7 8 4.2326 1.4541 -0.8730 8 7 1.6514 2.0991 -1.2553 9 6 2.0541 1.2833 -2.4299 10 6 2.0704 2.3120 -3.5898 11 6 2.6121 3.5847 -2.9101 12 6 2.3428 3.3989 -1.4102 13 6 4.1081 3.7215 -3.1694 14 7 4.5683 5.0435 -2.7472 15 6 6.0025 5.2574 -2.5384 16 6 6.6444 5.7233 -3.8468 17 6 8.1195 5.9439 -3.6319 18 1 8.5556 5.7697 -2.6593 19 6 8.9123 6.3691 -4.6767 20 7 8.3814 6.5818 -5.8609 21 14 10.7396 6.6500 -4.4084 22 1 11.3758 5.3825 -3.9681 23 1 11.3628 7.1010 -5.6786 24 1 10.9327 7.6893 -3.3654 25 6 3.7275 6.0639 -2.5391 26 8 4.1866 7.1424 -2.2278 27 6 2.2376 5.9278 -2.6807 28 8 1.9228 4.7325 -3.4003 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.5651 1.4277 2.1398 35 1 5.0842 1.4368 1.4223 36 1 3.0462 0.8571 -2.2801 37 1 1.3225 0.4986 -2.6221 38 1 1.0635 2.4778 -3.9729 39 1 2.7389 1.9854 -4.3863 40 1 3.2843 3.3876 -0.8613 41 1 1.7077 4.2052 -1.0433 42 1 4.3042 3.5928 -4.2338 43 1 4.6440 2.9556 -2.6088 44 1 6.4663 4.3244 -2.2182 45 1 6.1485 6.0178 -1.7712 46 1 6.1807 6.6563 -4.1670 47 1 6.4984 4.9629 -4.6141 48 1 8.9390 6.8813 -6.5958 49 1 1.8425 6.7893 -3.2190 50 1 1.7871 5.8827 -1.6892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273703121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:06 Heat of formation + Delta-G solvation = -129.028124 kcal Electronic energy + Delta-G solvation = -32080.228249 eV Core-core repulsion = 27913.556479 eV Total energy + Delta-G solvation = -4166.671770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.52503 -41.28073 -39.53398 -37.74045 -37.06657 -35.47601 -35.11199 -34.30753 -32.27388 -31.84580 -29.98314 -29.03611 -27.99847 -26.54554 -26.23882 -23.71932 -23.45492 -22.73574 -21.77231 -20.78922 -19.66617 -18.84537 -18.78335 -18.47596 -18.02995 -17.53231 -17.13321 -16.87511 -16.57052 -16.37544 -16.10466 -15.76987 -15.57693 -15.24142 -14.95350 -14.75102 -14.53396 -14.51094 -14.32801 -14.14551 -13.64953 -13.38722 -13.30200 -13.14178 -12.88117 -12.87031 -12.80668 -12.64414 -12.56406 -12.35467 -12.02220 -11.96324 -11.90774 -11.70365 -11.63117 -11.55508 -11.32862 -11.26848 -10.64169 -10.62805 -10.43795 -9.76836 -9.32905 -8.27307 -6.41282 1.34378 1.39926 1.40204 1.47914 1.54629 1.80075 2.36324 2.51831 2.57887 2.78841 3.05343 3.21377 3.35636 3.56555 3.67192 3.92029 3.96600 4.02886 4.11231 4.14297 4.23589 4.32515 4.37945 4.46878 4.48931 4.51706 4.55795 4.59897 4.67359 4.72095 4.81598 4.88351 4.93197 5.01057 5.07789 5.19322 5.20612 5.30901 5.35598 5.47257 5.55061 5.66407 5.72259 5.80651 5.87643 5.88189 6.09646 6.37112 6.43533 6.72614 6.98297 7.28192 7.31322 8.85172 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003221 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.115715 B = 8691.038041 C = 9507.925035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.055 3.945 4 H 0.126 0.874 5 C 0.482 3.518 6 N -0.839 5.839 7 O -0.575 6.575 8 N -0.472 5.472 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.100 3.900 12 C 0.013 3.987 13 C 0.096 3.904 14 N -0.596 5.596 15 C 0.132 3.868 16 C 0.030 3.970 17 C -0.548 4.548 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.975 3.025 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.268 1.268 25 C 0.468 3.532 26 O -0.589 6.589 27 C 0.058 3.942 28 O -0.359 6.359 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.417 0.583 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.059 0.941 46 H -0.024 1.024 47 H -0.008 1.008 48 H 0.266 0.734 49 H 0.144 0.856 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 -17.793 16.425 31.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.057 4.057 4 H 0.144 0.856 5 C 0.266 3.734 6 N -0.403 5.403 7 O -0.455 6.455 8 N -0.196 5.196 9 C -0.103 4.103 10 C -0.139 4.139 11 C 0.060 3.940 12 C -0.115 4.115 13 C -0.027 4.027 14 N -0.327 5.327 15 C 0.010 3.990 16 C -0.008 4.008 17 C -0.586 4.586 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.798 3.202 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.193 1.193 25 C 0.257 3.743 26 O -0.471 6.471 27 C -0.020 4.020 28 O -0.277 6.277 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.077 0.923 46 H -0.005 1.005 47 H 0.011 0.989 48 H 0.074 0.926 49 H 0.161 0.839 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.227 -17.150 15.561 30.748 hybrid contribution 2.637 0.583 0.214 2.709 sum -17.590 -16.568 15.775 28.857 Atomic orbital electron populations 1.21649 0.93182 1.02017 1.02893 1.21552 0.98180 0.91403 1.03434 1.22360 0.88200 0.99475 0.95713 0.85649 1.22288 0.93056 0.74405 0.83644 1.44000 1.12054 1.75890 1.08332 1.90706 1.66098 1.51093 1.37584 1.65305 1.51000 1.01751 1.01498 1.23613 1.02178 0.96216 0.88268 1.22480 1.03200 0.90137 0.98102 1.22290 0.88873 0.88113 0.94747 1.23465 0.98285 0.94649 0.95078 1.22289 0.95919 0.83935 1.00539 1.47739 1.07692 1.11611 1.65650 1.21452 0.78576 1.00463 0.98522 1.19109 0.95063 0.93944 0.92687 1.21482 0.93891 1.46199 0.97010 0.91722 1.26080 1.04632 0.94560 0.94593 1.70115 1.38086 1.46776 1.02291 0.85369 0.77951 0.79231 0.77691 1.18452 1.20475 1.19269 1.21795 0.91981 0.83541 0.76981 1.90711 1.78858 1.27176 1.50377 1.22885 0.87660 0.90131 1.01370 1.88114 1.66375 1.15474 1.57747 0.92237 0.91984 0.91870 0.91725 0.89561 0.75160 0.76753 0.90991 0.87494 0.87986 0.89729 0.93265 0.88824 0.92330 0.88553 0.90543 0.92277 1.00549 0.98943 0.92562 0.83888 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.80 71.98 0.71 -0.35 16 2 C -0.11 -0.96 5.04 30.59 0.15 -0.81 16 3 C 0.06 0.70 2.43 44.17 0.11 0.80 16 4 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 5 C 0.48 8.36 5.70 87.66 0.50 8.86 16 6 N -0.84 -8.94 8.87 -173.53 -1.54 -10.48 16 7 O -0.57 -15.16 11.76 -3.03 -0.04 -15.20 16 8 N -0.47 -8.08 4.85 -862.51 -4.18 -12.26 16 9 C 0.02 0.44 4.73 86.68 0.41 0.85 16 10 C -0.10 -2.14 6.34 31.67 0.20 -1.94 16 11 C 0.10 2.67 0.96 -10.43 -0.01 2.66 16 12 C 0.01 0.31 4.84 86.26 0.42 0.72 16 13 C 0.10 3.30 5.12 86.25 0.44 3.75 16 14 N -0.60 -24.68 2.80 -825.56 -2.32 -26.99 16 15 C 0.13 6.40 5.23 86.38 0.45 6.85 16 16 C 0.03 1.78 5.29 29.85 0.16 1.94 16 17 C -0.55 -33.60 9.11 25.60 0.23 -33.37 16 18 H 0.06 3.75 7.74 -2.91 -0.02 3.72 16 19 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 20 N -0.93 -60.34 13.29 21.45 0.28 -60.06 16 21 Si 0.97 46.45 29.54 68.60 2.03 48.47 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 C 0.47 19.04 7.42 87.67 0.65 19.69 16 26 O -0.59 -29.23 16.37 -3.03 -0.05 -29.28 16 27 C 0.06 1.67 6.43 71.10 0.46 2.13 16 28 O -0.36 -10.24 10.35 -148.98 -1.54 -11.79 16 29 H 0.06 0.61 7.75 -2.38 -0.02 0.59 16 30 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.74 6.49 -2.39 -0.02 0.72 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.42 1.44 8.83 -92.71 -0.82 0.62 16 35 H 0.40 4.62 8.93 -92.71 -0.83 3.79 16 36 H 0.07 1.60 5.34 -2.38 -0.01 1.59 16 37 H 0.11 1.46 7.58 -2.39 -0.02 1.44 16 38 H 0.10 1.96 8.07 -2.39 -0.02 1.94 16 39 H 0.08 1.81 7.69 -2.39 -0.02 1.79 16 40 H 0.05 1.31 4.91 -2.39 -0.01 1.30 16 41 H 0.09 1.97 6.08 -2.39 -0.01 1.95 16 42 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 43 H 0.10 3.36 6.17 -2.39 -0.01 3.35 16 44 H 0.08 3.45 7.94 -2.39 -0.02 3.43 16 45 H 0.06 3.01 7.29 -2.38 -0.02 2.99 16 46 H -0.02 -1.62 8.14 -2.39 -0.02 -1.64 16 47 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 48 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 49 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 50 H 0.12 2.61 6.48 -2.39 -0.02 2.60 16 Total: -1.00 -84.44 383.59 -2.68 -87.13 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.67 Total: 18.24 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.34 Total: 12.21 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -7.75 Total: -109.79 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -1.63 Total: -56.26 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -84.44 -2.68 -87.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273703121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.901 kcal (2) G-P(sol) polarization free energy of solvation -84.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds