Wall clock time and date at job start Wed Apr 1 2020 00:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 H 1.08997 * 109.46795 * 177.76647 * 3 2 1 5 5 C 1.50698 * 109.46967 * 297.76422 * 3 2 1 6 6 N 1.34777 * 120.00268 * 299.99760 * 5 3 2 7 7 O 1.21288 * 119.99494 * 119.99751 * 5 3 2 8 8 N 1.46900 * 109.46965 * 57.76390 * 3 2 1 9 9 C 1.47511 * 110.99843 * 56.57896 * 8 3 2 10 10 C 1.54467 * 107.25914 * 123.21496 * 9 8 3 11 11 C 1.54312 * 102.94814 * 21.54558 * 10 9 8 12 12 C 1.48005 * 110.99919 * 177.46535 * 8 3 2 13 13 C 1.52030 * 110.64619 * 207.01465 * 11 10 9 14 14 N 1.46264 * 109.96710 * 283.57167 * 13 11 10 15 15 C 1.46505 * 118.81290 * 162.92694 * 14 13 11 16 16 C 1.53001 * 109.47130 * 90.00200 * 15 14 13 17 17 C 1.50697 * 109.47326 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99415 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00629 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99623 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00298 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47086 * 60.00030 * 21 19 17 23 23 H 1.48501 * 109.47216 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47091 * 299.99812 * 21 19 17 25 25 C 1.33835 * 122.37284 * 342.90093 * 14 13 11 26 26 O 1.21290 * 118.62104 * 182.71242 * 25 14 13 27 27 C 1.50272 * 122.76036 * 2.74179 * 25 14 13 28 28 O 1.42102 * 110.68909 * 83.57169 * 11 10 9 29 29 H 1.08994 * 109.47139 * 305.28936 * 1 2 3 30 30 H 1.09003 * 109.47048 * 65.28572 * 1 2 3 31 31 H 1.08998 * 109.47489 * 185.27858 * 1 2 3 32 32 H 1.09000 * 109.47039 * 120.00444 * 2 1 3 33 33 H 1.09005 * 109.47221 * 239.99558 * 2 1 3 34 34 H 0.96999 * 119.99781 * 0.02562 * 6 5 3 35 35 H 0.96997 * 119.99586 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.88386 * 242.62842 * 9 8 3 37 37 H 1.09006 * 109.88497 * 3.64398 * 9 8 3 38 38 H 1.08992 * 110.71726 * 139.91009 * 10 9 8 39 39 H 1.09004 * 110.71782 * 263.00277 * 10 9 8 40 40 H 1.08995 * 110.38357 * 333.28439 * 12 8 3 41 41 H 1.09001 * 110.37939 * 95.64768 * 12 8 3 42 42 H 1.08994 * 109.38906 * 43.72643 * 13 11 10 43 43 H 1.09004 * 109.38249 * 163.42127 * 13 11 10 44 44 H 1.08997 * 109.46876 * 209.99800 * 15 14 13 45 45 H 1.08997 * 109.47183 * 330.00075 * 15 14 13 46 46 H 1.09001 * 109.46864 * 300.00076 * 16 15 14 47 47 H 1.08997 * 109.47189 * 59.99879 * 16 15 14 48 48 H 0.96993 * 120.00017 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.39331 * 103.41305 * 27 25 14 50 50 H 1.09001 * 109.39318 * 223.21721 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4426 0.0401 5 6 1.5835 2.1367 -1.2572 6 7 1.9537 1.6604 -2.4625 7 8 0.8828 3.1240 -1.1844 8 7 1.5067 2.1504 1.1715 9 6 1.8659 1.4517 2.4200 10 6 2.6263 2.4615 3.3078 11 6 2.1763 3.8254 2.7435 12 6 2.0282 3.5339 1.2379 13 6 3.2405 4.8836 2.9866 14 7 3.2103 5.3101 4.3854 15 6 4.3671 6.0250 4.9306 16 6 4.1801 7.5296 4.7249 17 6 5.3702 8.2649 5.2852 18 1 6.1788 7.7141 5.7427 19 6 5.4269 9.6406 5.2138 20 7 4.4424 10.3112 4.6562 21 14 6.9024 10.5520 5.9077 22 1 8.1338 10.1055 5.2080 23 1 6.7210 12.0123 5.7081 24 1 7.0252 10.2628 7.3591 25 6 2.1640 5.0713 5.1849 26 8 2.1904 5.4990 6.3196 27 6 0.9581 4.2950 4.7362 28 8 0.9321 4.2164 3.3077 29 1 -0.3633 0.5937 0.8388 30 1 -0.3633 0.4297 -0.9336 31 1 -0.3634 -1.0233 0.0945 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.5138 0.8706 -2.5206 35 1 1.6595 2.1071 -3.2716 36 1 0.9629 1.1161 2.9301 37 1 2.5044 0.5971 2.1961 38 1 2.3281 2.3585 4.3511 39 1 3.7036 2.3336 3.2016 40 1 2.9964 3.5990 0.7416 41 1 1.3208 4.2283 0.7846 42 1 4.2219 4.4695 2.7556 43 1 3.0508 5.7421 2.3423 44 1 4.4564 5.8124 5.9959 45 1 5.2713 5.6977 4.4176 46 1 4.0907 7.7422 3.6596 47 1 3.2759 7.8568 5.2379 48 1 4.4820 11.2790 4.6063 49 1 0.9995 3.2889 5.1534 50 1 0.0550 4.7950 5.0862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273703122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:11 Heat of formation + Delta-G solvation = -97.891781 kcal Electronic energy + Delta-G solvation = -31288.445387 eV Core-core repulsion = 27123.123789 eV Total energy + Delta-G solvation = -4165.321597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25300 -40.13653 -38.54441 -36.86812 -35.43329 -34.65055 -33.47434 -32.99648 -30.90801 -30.14308 -29.79401 -27.33579 -27.08138 -25.33698 -24.48895 -23.24964 -21.82954 -21.73186 -20.52063 -19.84793 -18.41418 -17.76346 -17.62092 -16.95383 -16.71214 -16.14962 -16.04319 -15.85005 -15.52330 -15.19075 -14.65074 -14.49940 -14.32349 -14.10359 -13.83003 -13.61634 -13.49328 -13.17819 -13.04855 -12.87333 -12.71714 -12.38687 -12.37183 -12.05878 -11.88874 -11.66802 -11.47128 -11.29400 -11.24116 -11.13310 -10.98155 -10.86503 -10.67420 -10.19151 -10.02869 -9.96940 -9.87469 -9.80072 -9.29199 -8.93730 -8.54751 -8.33373 -8.08262 -5.98246 -4.01889 2.38433 2.93033 3.01260 3.21933 3.34536 3.39082 3.41669 3.58461 3.63155 4.24092 4.32537 4.43782 4.45461 4.49278 4.52306 4.65684 4.73193 4.88992 4.98782 5.08283 5.14102 5.16604 5.30857 5.34570 5.37426 5.42711 5.46107 5.57485 5.60281 5.63091 5.70978 5.73129 5.82584 6.04761 6.07923 6.14150 6.43897 6.49908 6.58639 6.64637 6.76401 6.87276 7.01497 7.04038 7.62021 7.73219 7.95007 8.00792 8.01984 8.37004 8.54299 9.04509 9.61619 11.13199 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002646 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.143250 B =10580.505040 C =11458.540898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.057 3.943 4 H 0.068 0.932 5 C 0.522 3.478 6 N -0.859 5.859 7 O -0.516 6.516 8 N -0.497 5.497 9 C 0.048 3.952 10 C -0.172 4.172 11 C 0.094 3.906 12 C 0.069 3.931 13 C 0.099 3.901 14 N -0.596 5.596 15 C 0.115 3.885 16 C 0.015 3.985 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.479 3.521 26 O -0.539 6.539 27 C 0.049 3.951 28 O -0.341 6.341 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.402 0.598 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.023 0.977 48 H 0.262 0.738 49 H 0.084 0.916 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 -26.461 -13.905 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.055 4.055 4 H 0.085 0.915 5 C 0.305 3.695 6 N -0.424 5.424 7 O -0.390 6.390 8 N -0.222 5.222 9 C -0.079 4.079 10 C -0.210 4.210 11 C 0.053 3.947 12 C -0.058 4.058 13 C -0.025 4.025 14 N -0.328 5.328 15 C -0.006 4.006 16 C -0.023 4.023 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C 0.266 3.734 26 O -0.417 6.417 27 C -0.030 4.030 28 O -0.259 6.259 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.226 0.774 35 H 0.233 0.767 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.033 0.967 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.855 -25.377 -13.280 29.233 hybrid contribution 2.156 0.336 0.072 2.183 sum -3.698 -25.041 -13.208 28.551 Atomic orbital electron populations 1.21710 0.94172 1.01376 1.03338 1.21636 0.98130 0.92709 1.02694 1.21888 0.97962 0.95123 0.90567 0.91455 1.20392 0.79843 0.84223 0.85033 1.43859 1.56373 1.33960 1.08257 1.90790 1.35940 1.25409 1.86814 1.63503 1.56895 1.01427 1.00332 1.22888 0.99501 0.95852 0.89678 1.23392 1.01184 0.95179 1.01251 1.22163 0.85085 0.92537 0.94891 1.22905 1.00049 0.90729 0.92166 1.21803 0.98790 0.97920 0.84005 1.47691 1.18526 1.56270 1.10345 1.21943 0.84433 0.95318 0.98899 1.19345 0.97871 0.87934 0.97179 1.21041 1.04541 0.91636 1.38846 0.92639 1.25005 0.96258 0.97720 0.95315 1.69968 1.31659 1.07389 1.44092 0.86618 0.82863 0.78611 0.79654 1.20250 1.21257 1.20161 1.20763 0.84899 0.81516 0.86218 1.90757 1.80191 1.51226 1.19507 1.22855 0.98100 1.00206 0.81868 1.88063 1.30771 1.88647 1.18461 0.90505 0.93106 0.93041 0.90544 0.91322 0.77352 0.76686 0.89793 0.92095 0.89772 0.89954 0.92158 0.87060 0.89982 0.90275 0.90695 0.91901 0.96659 0.95902 0.92877 0.89786 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.50 37.16 0.35 -0.69 16 2 C -0.11 -0.59 5.25 -26.73 -0.14 -0.73 16 3 C 0.06 0.42 1.83 -68.87 -0.13 0.29 16 4 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 5 C 0.52 4.67 6.12 -10.99 -0.07 4.60 16 6 N -0.86 -4.20 8.75 31.22 0.27 -3.93 16 7 O -0.52 -7.09 15.39 5.55 0.09 -7.01 16 8 N -0.50 -4.85 3.86 -224.94 -0.87 -5.72 16 9 C 0.05 0.39 6.09 -2.72 -0.02 0.38 16 10 C -0.17 -1.67 5.76 -25.27 -0.15 -1.81 16 11 C 0.09 1.18 0.83 -89.87 -0.07 1.10 16 12 C 0.07 0.80 4.63 -2.66 -0.01 0.79 16 13 C 0.10 1.45 5.39 -4.66 -0.03 1.42 16 14 N -0.60 -11.01 2.82 -174.91 -0.49 -11.50 16 15 C 0.11 2.48 5.22 -4.04 -0.02 2.46 16 16 C 0.01 0.40 5.29 -27.88 -0.15 0.25 16 17 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.48 9.07 7.45 -11.61 -0.09 8.99 16 26 O -0.54 -12.50 16.37 5.55 0.09 -12.40 16 27 C 0.05 0.70 6.37 35.80 0.23 0.93 16 28 O -0.34 -4.99 10.44 -35.23 -0.37 -5.36 16 29 H 0.08 0.69 7.29 -51.93 -0.38 0.31 16 30 H 0.05 0.41 7.47 -51.93 -0.39 0.02 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.34 6.37 -51.93 -0.33 0.01 16 33 H 0.07 0.21 7.50 -51.93 -0.39 -0.18 16 34 H 0.40 0.72 8.22 -40.82 -0.34 0.39 16 35 H 0.40 1.76 8.93 -40.82 -0.36 1.40 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.37 6.10 -51.93 -0.32 0.06 16 38 H 0.08 0.85 5.94 -51.93 -0.31 0.54 16 39 H 0.08 0.72 7.80 -51.93 -0.41 0.32 16 40 H 0.06 0.61 7.59 -51.93 -0.39 0.22 16 41 H 0.11 1.60 7.12 -51.93 -0.37 1.23 16 42 H 0.08 1.01 7.71 -51.93 -0.40 0.61 16 43 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 44 H 0.07 1.72 7.30 -51.93 -0.38 1.35 16 45 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.08 0.98 6.59 -51.93 -0.34 0.63 16 50 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -37.83 388.90 -8.41 -46.24 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.01 Total: -0.45 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.69 Total: 4.14 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.35 Total: -48.12 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.19 Total: -24.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.83 -8.41 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273703122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.649 kcal (2) G-P(sol) polarization free energy of solvation -37.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds