Wall clock time and date at job start Wed Apr 1 2020 00:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 H 1.08997 * 109.46795 * 177.76647 * 3 2 1 5 5 C 1.50698 * 109.46967 * 297.76422 * 3 2 1 6 6 N 1.34777 * 120.00268 * 299.99760 * 5 3 2 7 7 O 1.21288 * 119.99494 * 119.99751 * 5 3 2 8 8 N 1.46900 * 109.46965 * 57.76390 * 3 2 1 9 9 C 1.47511 * 110.99843 * 56.57896 * 8 3 2 10 10 C 1.54467 * 107.25914 * 123.21496 * 9 8 3 11 11 C 1.54312 * 102.94814 * 21.54558 * 10 9 8 12 12 C 1.48005 * 110.99919 * 177.46535 * 8 3 2 13 13 C 1.52030 * 110.64619 * 207.01465 * 11 10 9 14 14 N 1.46264 * 109.96710 * 283.57167 * 13 11 10 15 15 C 1.46505 * 118.81290 * 162.92694 * 14 13 11 16 16 C 1.53001 * 109.47130 * 90.00200 * 15 14 13 17 17 C 1.50697 * 109.47326 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99415 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00629 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99623 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00298 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47086 * 60.00030 * 21 19 17 23 23 H 1.48501 * 109.47216 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47091 * 299.99812 * 21 19 17 25 25 C 1.33835 * 122.37284 * 342.90093 * 14 13 11 26 26 O 1.21290 * 118.62104 * 182.71242 * 25 14 13 27 27 C 1.50272 * 122.76036 * 2.74179 * 25 14 13 28 28 O 1.42102 * 110.68909 * 83.57169 * 11 10 9 29 29 H 1.08994 * 109.47139 * 305.28936 * 1 2 3 30 30 H 1.09003 * 109.47048 * 65.28572 * 1 2 3 31 31 H 1.08998 * 109.47489 * 185.27858 * 1 2 3 32 32 H 1.09000 * 109.47039 * 120.00444 * 2 1 3 33 33 H 1.09005 * 109.47221 * 239.99558 * 2 1 3 34 34 H 0.96999 * 119.99781 * 0.02562 * 6 5 3 35 35 H 0.96997 * 119.99586 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.88386 * 242.62842 * 9 8 3 37 37 H 1.09006 * 109.88497 * 3.64398 * 9 8 3 38 38 H 1.08992 * 110.71726 * 139.91009 * 10 9 8 39 39 H 1.09004 * 110.71782 * 263.00277 * 10 9 8 40 40 H 1.08995 * 110.38357 * 333.28439 * 12 8 3 41 41 H 1.09001 * 110.37939 * 95.64768 * 12 8 3 42 42 H 1.08994 * 109.38906 * 43.72643 * 13 11 10 43 43 H 1.09004 * 109.38249 * 163.42127 * 13 11 10 44 44 H 1.08997 * 109.46876 * 209.99800 * 15 14 13 45 45 H 1.08997 * 109.47183 * 330.00075 * 15 14 13 46 46 H 1.09001 * 109.46864 * 300.00076 * 16 15 14 47 47 H 1.08997 * 109.47189 * 59.99879 * 16 15 14 48 48 H 0.96993 * 120.00017 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.39331 * 103.41305 * 27 25 14 50 50 H 1.09001 * 109.39318 * 223.21721 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4426 0.0401 5 6 1.5835 2.1367 -1.2572 6 7 1.9537 1.6604 -2.4625 7 8 0.8828 3.1240 -1.1844 8 7 1.5067 2.1504 1.1715 9 6 1.8659 1.4517 2.4200 10 6 2.6263 2.4615 3.3078 11 6 2.1763 3.8254 2.7435 12 6 2.0282 3.5339 1.2379 13 6 3.2405 4.8836 2.9866 14 7 3.2103 5.3101 4.3854 15 6 4.3671 6.0250 4.9306 16 6 4.1801 7.5296 4.7249 17 6 5.3702 8.2649 5.2852 18 1 6.1788 7.7141 5.7427 19 6 5.4269 9.6406 5.2138 20 7 4.4424 10.3112 4.6562 21 14 6.9024 10.5520 5.9077 22 1 8.1338 10.1055 5.2080 23 1 6.7210 12.0123 5.7081 24 1 7.0252 10.2628 7.3591 25 6 2.1640 5.0713 5.1849 26 8 2.1904 5.4990 6.3196 27 6 0.9581 4.2950 4.7362 28 8 0.9321 4.2164 3.3077 29 1 -0.3633 0.5937 0.8388 30 1 -0.3633 0.4297 -0.9336 31 1 -0.3634 -1.0233 0.0945 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.5138 0.8706 -2.5206 35 1 1.6595 2.1071 -3.2716 36 1 0.9629 1.1161 2.9301 37 1 2.5044 0.5971 2.1961 38 1 2.3281 2.3585 4.3511 39 1 3.7036 2.3336 3.2016 40 1 2.9964 3.5990 0.7416 41 1 1.3208 4.2283 0.7846 42 1 4.2219 4.4695 2.7556 43 1 3.0508 5.7421 2.3423 44 1 4.4564 5.8124 5.9959 45 1 5.2713 5.6977 4.4176 46 1 4.0907 7.7422 3.6596 47 1 3.2759 7.8568 5.2379 48 1 4.4820 11.2790 4.6063 49 1 0.9995 3.2889 5.1534 50 1 0.0550 4.7950 5.0862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273703122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:10 Heat of formation + Delta-G solvation = -129.364989 kcal Electronic energy + Delta-G solvation = -31289.810167 eV Core-core repulsion = 27123.123789 eV Total energy + Delta-G solvation = -4166.686378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.31537 -41.04744 -39.68781 -37.83472 -37.03638 -35.40154 -35.11828 -34.05046 -32.29410 -31.26770 -30.92599 -28.77260 -27.81161 -26.63769 -26.12927 -23.87496 -23.50815 -22.44608 -21.89531 -20.52463 -19.53275 -18.83527 -18.71942 -18.36665 -17.75522 -17.49913 -17.13109 -16.78436 -16.58883 -16.29344 -16.24182 -15.79832 -15.29282 -15.17455 -14.80750 -14.64973 -14.45839 -14.33538 -14.25637 -14.19827 -13.99654 -13.73765 -13.44216 -13.31244 -13.04922 -12.84341 -12.68013 -12.58695 -12.33288 -12.22169 -12.10645 -11.93270 -11.86799 -11.75256 -11.66021 -11.50932 -11.21399 -10.73708 -10.61433 -10.54483 -10.39484 -9.72347 -9.20425 -8.24794 -6.38538 1.36853 1.42164 1.43476 1.49999 1.74966 1.83462 2.38545 2.46717 2.53521 2.90294 3.08383 3.29576 3.48001 3.55604 3.68134 3.90251 4.02846 4.07235 4.13676 4.18331 4.23935 4.30244 4.36207 4.42079 4.45436 4.51282 4.57869 4.62539 4.67303 4.78625 4.86788 4.88357 4.96106 4.99958 5.12877 5.15700 5.19297 5.27203 5.40369 5.52506 5.57870 5.76041 5.84462 5.94121 5.96788 6.08719 6.12916 6.39807 6.59110 6.77005 7.02747 7.31399 7.47377 8.87580 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002646 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.143250 B =10580.505040 C =11458.540898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.056 3.944 4 H 0.094 0.906 5 C 0.515 3.485 6 N -0.840 5.840 7 O -0.576 6.576 8 N -0.514 5.514 9 C 0.054 3.946 10 C -0.164 4.164 11 C 0.091 3.909 12 C 0.079 3.921 13 C 0.095 3.905 14 N -0.596 5.596 15 C 0.130 3.870 16 C 0.025 3.975 17 C -0.544 4.544 18 H 0.069 0.931 19 C -0.003 4.003 20 N -0.936 5.936 21 Si 0.974 3.026 22 H -0.257 1.257 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.471 3.529 26 O -0.590 6.590 27 C 0.061 3.939 28 O -0.357 6.357 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.416 0.584 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.093 0.907 46 H -0.007 1.007 47 H -0.029 1.029 48 H 0.264 0.736 49 H 0.121 0.879 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -29.740 -14.574 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.056 4.056 4 H 0.111 0.889 5 C 0.300 3.700 6 N -0.405 5.405 7 O -0.454 6.454 8 N -0.239 5.239 9 C -0.073 4.073 10 C -0.202 4.202 11 C 0.051 3.949 12 C -0.049 4.049 13 C -0.028 4.028 14 N -0.327 5.327 15 C 0.008 3.992 16 C -0.013 4.013 17 C -0.582 4.582 18 H 0.087 0.913 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.797 3.203 22 H -0.182 1.182 23 H -0.209 1.209 24 H -0.193 1.193 25 C 0.260 3.740 26 O -0.472 6.472 27 C -0.018 4.018 28 O -0.276 6.276 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.012 0.988 47 H -0.011 1.011 48 H 0.073 0.927 49 H 0.138 0.862 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.480 -28.740 -14.015 32.164 hybrid contribution 1.366 1.348 0.167 1.926 sum -2.114 -27.392 -13.848 30.766 Atomic orbital electron populations 1.21666 0.95899 1.01532 1.01336 1.21686 0.96444 0.91422 1.04967 1.22039 0.99309 0.95641 0.88626 0.88860 1.20851 0.79083 0.83569 0.86520 1.43714 1.55392 1.34045 1.07325 1.90780 1.38834 1.28091 1.87695 1.63374 1.57842 1.00746 1.01908 1.22906 0.99844 0.96053 0.88493 1.23382 1.02458 0.93158 1.01239 1.22300 0.83519 0.93304 0.95810 1.22671 0.99685 0.91560 0.91017 1.22071 1.01529 0.98095 0.81113 1.47727 1.17642 1.55468 1.11905 1.21527 0.86907 0.91988 0.98787 1.19156 0.95344 0.91955 0.94812 1.21519 1.05271 0.92471 1.38963 0.91292 1.26093 0.99688 0.98875 0.95429 1.70133 1.34158 1.07810 1.45454 0.85378 0.78954 0.76897 0.79072 1.18179 1.20922 1.19349 1.21694 0.85777 0.80996 0.85524 1.90724 1.81240 1.53436 1.21802 1.22847 0.95686 1.01224 0.82043 1.88063 1.32095 1.88985 1.18409 0.92888 0.94884 0.91635 0.88765 0.88465 0.75207 0.76330 0.90024 0.88911 0.89941 0.88139 0.90778 0.90863 0.86860 0.92514 0.92163 0.88860 0.98828 1.01064 0.92715 0.86187 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.50 71.98 0.68 -1.09 16 2 C -0.11 -0.70 5.25 30.59 0.16 -0.54 16 3 C 0.06 0.65 1.83 44.17 0.08 0.73 16 4 H 0.09 0.66 8.03 -2.39 -0.02 0.64 16 5 C 0.52 8.59 6.12 87.66 0.54 9.13 16 6 N -0.84 -6.50 8.75 -173.53 -1.52 -8.02 16 7 O -0.58 -16.30 15.39 -3.05 -0.05 -16.35 16 8 N -0.51 -9.10 3.86 -865.56 -3.34 -12.44 16 9 C 0.05 0.70 6.09 86.68 0.53 1.23 16 10 C -0.16 -2.70 5.76 31.54 0.18 -2.51 16 11 C 0.09 2.20 0.83 -10.31 -0.01 2.19 16 12 C 0.08 1.78 4.63 86.45 0.40 2.18 16 13 C 0.09 2.74 5.39 86.10 0.46 3.20 16 14 N -0.60 -22.36 2.82 -826.22 -2.33 -24.69 16 15 C 0.13 5.71 5.22 86.38 0.45 6.17 16 16 C 0.03 1.44 5.29 29.85 0.16 1.60 16 17 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 18 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 19 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 20 N -0.94 -59.97 13.29 21.45 0.28 -59.69 16 21 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.47 18.25 7.45 87.67 0.65 18.91 16 26 O -0.59 -28.54 16.37 -3.06 -0.05 -28.59 16 27 C 0.06 1.72 6.37 71.10 0.45 2.18 16 28 O -0.36 -10.45 10.44 -148.98 -1.55 -12.01 16 29 H 0.05 0.90 7.29 -2.39 -0.02 0.89 16 30 H 0.03 0.51 7.47 -2.39 -0.02 0.49 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.35 6.37 -2.39 -0.02 0.33 16 33 H 0.10 0.12 7.50 -2.38 -0.02 0.10 16 34 H 0.42 0.12 8.22 -92.71 -0.76 -0.64 16 35 H 0.41 3.01 8.93 -92.71 -0.83 2.18 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.09 0.64 6.10 -2.38 -0.01 0.62 16 38 H 0.08 1.41 5.94 -2.39 -0.01 1.40 16 39 H 0.10 1.32 7.80 -2.38 -0.02 1.30 16 40 H 0.07 1.41 7.59 -2.39 -0.02 1.39 16 41 H 0.07 2.25 7.12 -2.39 -0.02 2.23 16 42 H 0.11 2.54 7.71 -2.39 -0.02 2.52 16 43 H 0.06 1.88 8.13 -2.38 -0.02 1.87 16 44 H 0.06 2.83 7.30 -2.39 -0.02 2.82 16 45 H 0.09 3.51 7.95 -2.39 -0.02 3.49 16 46 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H -0.03 -1.93 8.14 -2.39 -0.02 -1.95 16 48 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 49 H 0.12 2.56 6.59 -2.39 -0.02 2.55 16 50 H 0.13 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -89.08 388.90 -1.72 -90.80 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -0.62 Total: 11.73 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.44 Total: 11.71 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -6.91 Total: -104.84 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -1.65 Total: -56.94 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -89.08 -1.72 -90.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273703122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.561 kcal (2) G-P(sol) polarization free energy of solvation -89.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds