Wall clock time and date at job start Tue Mar 31 2020 23:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00547 * 2 1 4 4 O 1.21293 * 119.99507 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00360 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46971 * 204.99856 * 5 3 2 7 7 C 1.53005 * 109.47080 * 85.00285 * 5 3 2 8 8 N 1.46894 * 109.47383 * 325.00260 * 5 3 2 9 9 C 1.48042 * 111.00254 * 183.11089 * 8 5 3 10 10 C 1.53497 * 86.04765 * 137.28901 * 9 8 5 11 11 C 1.48052 * 110.99931 * 282.55263 * 8 5 3 12 12 C 1.52782 * 113.49580 * 222.17725 * 10 9 8 13 13 O 1.43382 * 108.24368 * 273.90493 * 12 10 9 14 14 C 1.42829 * 113.32984 * 294.34668 * 13 12 10 15 15 C 1.50274 * 110.50056 * 51.29207 * 14 13 12 16 16 O 1.21282 * 118.96666 * 161.62097 * 15 14 13 17 17 N 1.34271 * 122.06123 * 341.64778 * 15 14 13 18 18 C 1.46499 * 119.37955 * 181.93141 * 17 15 14 19 19 C 1.53000 * 109.47233 * 271.83219 * 18 17 15 20 20 C 1.50697 * 109.47453 * 174.76791 * 19 18 17 21 21 H 1.08005 * 119.99617 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00166 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00262 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47046 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47418 * 120.00019 * 24 22 20 27 27 H 1.48504 * 109.47016 * 239.99888 * 24 22 20 28 28 H 1.09001 * 109.46850 * 59.99726 * 1 2 3 29 29 H 1.08995 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47232 * 300.00237 * 1 2 3 31 31 H 0.97000 * 120.00427 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46939 * 169.89426 * 6 5 3 33 33 H 1.08994 * 109.47695 * 289.90274 * 6 5 3 34 34 H 1.08997 * 109.47025 * 49.90341 * 6 5 3 35 35 H 1.08998 * 109.47132 * 300.00274 * 7 5 3 36 36 H 1.09004 * 109.46649 * 59.99845 * 7 5 3 37 37 H 1.09003 * 109.47152 * 179.97438 * 7 5 3 38 38 H 1.08998 * 113.78166 * 23.00359 * 9 8 5 39 39 H 1.09000 * 113.77894 * 251.56989 * 9 8 5 40 40 H 1.08994 * 113.78238 * 108.42106 * 11 8 5 41 41 H 1.09006 * 113.77596 * 336.98720 * 11 8 5 42 42 H 1.09001 * 109.72436 * 154.20544 * 12 10 9 43 43 H 1.09001 * 109.70050 * 33.58804 * 12 10 9 44 44 H 1.09001 * 109.26889 * 171.55382 * 14 13 12 45 45 H 1.08998 * 109.26968 * 291.02993 * 14 13 12 46 46 H 1.09005 * 109.47151 * 31.82840 * 18 17 15 47 47 H 1.08997 * 109.47028 * 151.82985 * 18 17 15 48 48 H 1.09005 * 109.46754 * 294.76879 * 19 18 17 49 49 H 1.08995 * 109.47386 * 54.76164 * 19 18 17 50 50 H 0.97001 * 120.00651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1557 2.4746 0.6101 7 6 4.1565 1.0411 -1.4363 8 7 4.1353 0.0328 0.7953 9 6 5.6132 0.0428 0.8804 10 6 5.4244 -0.3119 2.3618 11 6 4.0284 0.3151 2.2447 12 6 6.3610 0.4531 3.2955 13 8 7.5984 -0.2664 3.3782 14 6 7.4692 -1.5438 4.0040 15 6 6.3587 -2.3315 3.3680 16 8 6.3228 -3.5328 3.5306 17 7 5.4052 -1.7470 2.6249 18 6 4.3257 -2.5656 2.0674 19 6 4.7540 -3.1158 0.7056 20 6 3.6984 -4.0599 0.1905 21 1 2.8109 -4.2490 0.7763 22 6 3.8655 -4.6823 -1.0283 23 7 4.9459 -4.4518 -1.7417 24 14 2.5566 -5.8520 -1.6670 25 1 1.4476 -5.9388 -0.6831 26 1 2.0320 -5.3486 -2.9618 27 1 3.1499 -7.1991 -1.8635 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 5.2306 2.4032 0.7762 33 1 3.9473 3.2990 -0.0718 34 1 3.6524 2.6530 1.5603 35 1 3.7932 0.1097 -1.8706 36 1 3.7933 1.8829 -2.0259 37 1 5.2465 1.0415 -1.4359 38 1 6.0562 1.0252 0.7166 39 1 6.0923 -0.7439 0.2977 40 1 3.2470 -0.2550 2.7471 41 1 4.0024 1.3781 2.4847 42 1 5.9124 0.5281 4.2861 43 1 6.5422 1.4514 2.8971 44 1 8.4053 -2.0923 3.8987 45 1 7.2512 -1.4052 5.0629 46 1 4.1119 -3.3940 2.7430 47 1 3.4312 -1.9545 1.9474 48 1 4.8780 -2.2914 0.0033 49 1 5.6988 -3.6492 0.8100 50 1 5.0638 -4.8899 -2.5991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273839140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:47 Heat of formation + Delta-G solvation = -51.341761 kcal Electronic energy + Delta-G solvation = -33039.956082 eV Core-core repulsion = 28876.653045 eV Total energy + Delta-G solvation = -4163.303037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82846 -39.93744 -38.61643 -37.43012 -35.30797 -34.37603 -33.39896 -32.43706 -30.04271 -29.38382 -27.82457 -27.42409 -27.01153 -25.87982 -24.99292 -24.08805 -22.34142 -21.15279 -20.71682 -19.18104 -18.31349 -17.66305 -17.23702 -16.67057 -16.23088 -16.01176 -15.75725 -15.43993 -15.12763 -14.85753 -14.54942 -14.44534 -14.32755 -13.97349 -13.85748 -13.69212 -13.24616 -12.92090 -12.72037 -12.46257 -12.30580 -12.19995 -12.13296 -12.06505 -11.87536 -11.74318 -11.63676 -11.22691 -11.20562 -10.99984 -10.96750 -10.91191 -10.63342 -10.40253 -9.80720 -9.72277 -9.62897 -9.25961 -8.95970 -8.90735 -8.68137 -8.29432 -8.10761 -5.97027 -3.97896 2.73446 2.81670 3.11058 3.30603 3.39454 3.41712 3.42225 3.56792 3.76427 4.32712 4.44929 4.47999 4.51831 4.65231 4.80060 4.93101 4.99616 5.05091 5.09542 5.23195 5.27787 5.30885 5.39822 5.40205 5.50963 5.52662 5.59064 5.63412 5.72044 5.77623 5.84119 5.88390 6.05701 6.06222 6.19740 6.21124 6.39376 6.57707 6.62115 6.63858 6.86025 6.90563 6.99998 7.69123 7.75378 7.77079 8.01109 8.08281 8.39712 8.40708 8.51011 9.08988 9.64492 11.14193 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007492 B = 0.006597 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3736.287748 B = 4243.228442 C = 6940.231613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.717 5.717 3 C 0.533 3.467 4 O -0.556 6.556 5 C 0.055 3.945 6 C -0.168 4.168 7 C -0.135 4.135 8 N -0.445 5.445 9 C 0.000 4.000 10 C 0.112 3.888 11 C -0.016 4.016 12 C 0.062 3.938 13 O -0.367 6.367 14 C 0.048 3.952 15 C 0.481 3.519 16 O -0.531 6.531 17 N -0.572 5.572 18 C 0.120 3.880 19 C 0.019 3.981 20 C -0.511 4.511 21 H 0.052 0.948 22 C 0.061 3.939 23 N -0.891 5.891 24 Si 0.886 3.114 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.422 0.578 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.034 0.966 49 H 0.012 0.988 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 14.879 7.836 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.369 5.369 3 C 0.318 3.682 4 O -0.434 6.434 5 C -0.038 4.038 6 C -0.227 4.227 7 C -0.193 4.193 8 N -0.168 5.168 9 C -0.129 4.129 10 C 0.024 3.976 11 C -0.146 4.146 12 C -0.016 4.016 13 O -0.285 6.285 14 C -0.031 4.031 15 C 0.268 3.732 16 O -0.407 6.407 17 N -0.303 5.303 18 C 0.000 4.000 19 C -0.018 4.018 20 C -0.550 4.550 21 H 0.070 0.930 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.714 3.286 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.259 0.741 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.145 0.855 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.030 0.970 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.363 14.413 7.385 16.199 hybrid contribution -0.467 -0.513 -0.249 0.737 sum -0.830 13.900 7.136 15.647 Atomic orbital electron populations 1.21515 0.80290 1.02354 1.01556 1.45873 1.07353 1.09972 1.73663 1.20223 0.89078 0.83584 0.75322 1.90663 1.70060 1.31731 1.50969 1.21710 0.92335 0.92118 0.97614 1.22340 1.01058 0.97237 1.02029 1.21774 1.01898 1.03281 0.92358 1.69004 1.10122 1.34044 1.03668 1.24593 0.89922 1.02505 0.95858 1.22110 0.96104 0.83186 0.96216 1.24608 0.97369 1.01013 0.91572 1.22974 0.84380 0.95556 0.98642 1.88144 1.30210 1.29422 1.80725 1.22805 0.99445 0.83917 0.96959 1.20918 0.83717 0.88878 0.79719 1.90772 1.75133 1.14294 1.60537 1.47492 1.26961 1.05896 1.49976 1.21945 0.87359 0.92794 0.97868 1.19367 0.96639 0.96037 0.89797 1.21095 1.04962 1.25715 1.03222 0.92961 1.24920 0.95408 0.96710 0.96990 1.69968 1.26547 1.43518 1.13047 0.86642 0.82053 0.81198 0.78678 1.19852 1.21200 1.21178 0.92639 0.90474 0.92699 0.74087 0.91208 0.90874 0.91610 0.90541 0.91872 0.91174 0.89686 0.87179 0.88375 0.88947 0.91686 0.86965 0.85472 0.89917 0.91780 0.90805 0.94744 0.97008 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.70 59.84 0.64 1.70 16 2 N -0.72 -10.13 5.61 -67.08 -0.38 -10.50 16 3 C 0.53 7.83 6.36 -10.99 -0.07 7.76 16 4 O -0.56 -9.54 16.27 5.55 0.09 -9.45 16 5 C 0.06 0.70 0.65 -132.75 -0.09 0.61 16 6 C -0.17 -1.73 6.74 37.16 0.25 -1.48 16 7 C -0.14 -1.73 8.39 37.16 0.31 -1.42 16 8 N -0.44 -5.86 3.43 -225.96 -0.77 -6.63 16 9 C 0.00 0.01 5.11 -2.94 -0.02 -0.01 16 10 C 0.11 1.40 1.56 -135.16 -0.21 1.19 16 11 C -0.02 -0.19 6.01 -2.95 -0.02 -0.20 16 12 C 0.06 0.60 6.09 37.05 0.23 0.83 16 13 O -0.37 -4.41 10.84 -35.23 -0.38 -4.79 16 14 C 0.05 0.61 6.94 35.80 0.25 0.85 16 15 C 0.48 8.39 7.63 -11.42 -0.09 8.30 16 16 O -0.53 -11.66 16.51 5.56 0.09 -11.57 16 17 N -0.57 -9.50 2.66 -162.12 -0.43 -9.93 16 18 C 0.12 2.39 4.45 -4.04 -0.02 2.37 16 19 C 0.02 0.47 4.97 -27.88 -0.14 0.34 16 20 C -0.51 -13.76 9.11 -34.44 -0.31 -14.07 16 21 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 24 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.42 6.41 8.19 -40.82 -0.33 6.07 16 32 H 0.07 0.58 5.63 -51.93 -0.29 0.29 16 33 H 0.07 0.79 8.11 -51.93 -0.42 0.36 16 34 H 0.07 0.67 6.27 -51.93 -0.33 0.34 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.83 7.21 -51.93 -0.37 0.45 16 38 H 0.09 0.86 5.26 -51.93 -0.27 0.59 16 39 H 0.11 1.83 6.86 -51.93 -0.36 1.47 16 40 H 0.10 1.21 6.95 -51.93 -0.36 0.85 16 41 H 0.09 0.86 5.09 -51.93 -0.26 0.59 16 42 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.11 0.80 7.86 -51.93 -0.41 0.39 16 44 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.42 7.41 -51.93 -0.38 1.03 16 47 H 0.07 1.34 5.51 -51.93 -0.29 1.05 16 48 H 0.03 0.85 5.76 -51.93 -0.30 0.55 16 49 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -34.07 385.05 -7.37 -41.43 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.73 Total: 6.36 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.62 Total: 8.35 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.85 Total: -52.36 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.20 Total: -25.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.07 -7.37 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.907 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds