Wall clock time and date at job start Tue Mar 31 2020 23:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00547 * 2 1 4 4 O 1.21293 * 119.99507 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00360 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46971 * 204.99856 * 5 3 2 7 7 C 1.53005 * 109.47080 * 85.00285 * 5 3 2 8 8 N 1.46894 * 109.47383 * 325.00260 * 5 3 2 9 9 C 1.48042 * 111.00254 * 183.11089 * 8 5 3 10 10 C 1.53497 * 86.04765 * 137.28901 * 9 8 5 11 11 C 1.48052 * 110.99931 * 282.55263 * 8 5 3 12 12 C 1.52782 * 113.49580 * 222.17725 * 10 9 8 13 13 O 1.43382 * 108.24368 * 273.90493 * 12 10 9 14 14 C 1.42829 * 113.32984 * 294.34668 * 13 12 10 15 15 C 1.50274 * 110.50056 * 51.29207 * 14 13 12 16 16 O 1.21282 * 118.96666 * 161.62097 * 15 14 13 17 17 N 1.34271 * 122.06123 * 341.64778 * 15 14 13 18 18 C 1.46499 * 119.37955 * 181.93141 * 17 15 14 19 19 C 1.53000 * 109.47233 * 271.83219 * 18 17 15 20 20 C 1.50697 * 109.47453 * 174.76791 * 19 18 17 21 21 H 1.08005 * 119.99617 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00166 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00262 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47046 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47418 * 120.00019 * 24 22 20 27 27 H 1.48504 * 109.47016 * 239.99888 * 24 22 20 28 28 H 1.09001 * 109.46850 * 59.99726 * 1 2 3 29 29 H 1.08995 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47232 * 300.00237 * 1 2 3 31 31 H 0.97000 * 120.00427 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46939 * 169.89426 * 6 5 3 33 33 H 1.08994 * 109.47695 * 289.90274 * 6 5 3 34 34 H 1.08997 * 109.47025 * 49.90341 * 6 5 3 35 35 H 1.08998 * 109.47132 * 300.00274 * 7 5 3 36 36 H 1.09004 * 109.46649 * 59.99845 * 7 5 3 37 37 H 1.09003 * 109.47152 * 179.97438 * 7 5 3 38 38 H 1.08998 * 113.78166 * 23.00359 * 9 8 5 39 39 H 1.09000 * 113.77894 * 251.56989 * 9 8 5 40 40 H 1.08994 * 113.78238 * 108.42106 * 11 8 5 41 41 H 1.09006 * 113.77596 * 336.98720 * 11 8 5 42 42 H 1.09001 * 109.72436 * 154.20544 * 12 10 9 43 43 H 1.09001 * 109.70050 * 33.58804 * 12 10 9 44 44 H 1.09001 * 109.26889 * 171.55382 * 14 13 12 45 45 H 1.08998 * 109.26968 * 291.02993 * 14 13 12 46 46 H 1.09005 * 109.47151 * 31.82840 * 18 17 15 47 47 H 1.08997 * 109.47028 * 151.82985 * 18 17 15 48 48 H 1.09005 * 109.46754 * 294.76879 * 19 18 17 49 49 H 1.08995 * 109.47386 * 54.76164 * 19 18 17 50 50 H 0.97001 * 120.00651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1557 2.4746 0.6101 7 6 4.1565 1.0411 -1.4363 8 7 4.1353 0.0328 0.7953 9 6 5.6132 0.0428 0.8804 10 6 5.4244 -0.3119 2.3618 11 6 4.0284 0.3151 2.2447 12 6 6.3610 0.4531 3.2955 13 8 7.5984 -0.2664 3.3782 14 6 7.4692 -1.5438 4.0040 15 6 6.3587 -2.3315 3.3680 16 8 6.3228 -3.5328 3.5306 17 7 5.4052 -1.7470 2.6249 18 6 4.3257 -2.5656 2.0674 19 6 4.7540 -3.1158 0.7056 20 6 3.6984 -4.0599 0.1905 21 1 2.8109 -4.2490 0.7763 22 6 3.8655 -4.6823 -1.0283 23 7 4.9459 -4.4518 -1.7417 24 14 2.5566 -5.8520 -1.6670 25 1 1.4476 -5.9388 -0.6831 26 1 2.0320 -5.3486 -2.9618 27 1 3.1499 -7.1991 -1.8635 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.9500 -0.8400 -0.0004 32 1 5.2306 2.4032 0.7762 33 1 3.9473 3.2990 -0.0718 34 1 3.6524 2.6530 1.5603 35 1 3.7932 0.1097 -1.8706 36 1 3.7933 1.8829 -2.0259 37 1 5.2465 1.0415 -1.4359 38 1 6.0562 1.0252 0.7166 39 1 6.0923 -0.7439 0.2977 40 1 3.2470 -0.2550 2.7471 41 1 4.0024 1.3781 2.4847 42 1 5.9124 0.5281 4.2861 43 1 6.5422 1.4514 2.8971 44 1 8.4053 -2.0923 3.8987 45 1 7.2512 -1.4052 5.0629 46 1 4.1119 -3.3940 2.7430 47 1 3.4312 -1.9545 1.9474 48 1 4.8780 -2.2914 0.0033 49 1 5.6988 -3.6492 0.8100 50 1 5.0638 -4.8899 -2.5991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273839140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:46 Heat of formation + Delta-G solvation = -78.377495 kcal Electronic energy + Delta-G solvation = -33041.128439 eV Core-core repulsion = 28876.653045 eV Total energy + Delta-G solvation = -4164.475394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.89591 -41.11943 -39.82875 -38.51261 -36.66556 -35.50882 -35.16701 -33.90262 -31.74364 -30.38210 -28.73707 -28.62452 -28.19410 -26.89161 -26.36069 -25.47972 -23.42919 -22.87310 -21.96183 -20.26412 -19.45656 -18.89289 -18.36536 -18.27537 -17.52324 -17.21154 -16.88914 -16.55960 -16.47891 -16.27161 -15.93483 -15.64874 -15.41225 -15.05110 -14.95914 -14.89943 -14.43179 -14.24633 -14.22579 -13.80230 -13.69832 -13.37360 -13.20524 -13.15221 -13.06553 -12.94478 -12.80022 -12.66106 -12.60322 -12.50912 -12.20403 -12.09482 -11.95906 -11.73444 -11.58948 -11.32093 -11.20734 -10.77962 -10.46530 -10.31098 -10.04269 -9.67390 -9.56511 -8.13278 -6.21568 1.38238 1.40742 1.48217 1.52017 1.59500 1.89743 2.37332 2.44031 2.64733 2.80910 3.21189 3.29832 3.46663 3.51567 3.64070 3.86691 3.98534 4.03849 4.16778 4.21452 4.33007 4.40672 4.45737 4.53538 4.58587 4.60782 4.64709 4.68183 4.73201 4.75256 4.79583 4.84734 4.88380 4.93862 4.99687 5.11698 5.16315 5.26844 5.33484 5.38544 5.52030 5.60627 5.78459 5.84404 5.92958 6.00383 6.31241 6.53311 6.59678 6.93796 7.12807 7.25890 7.45396 8.98183 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007492 B = 0.006597 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3736.287748 B = 4243.228442 C = 6940.231613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.720 5.720 3 C 0.529 3.471 4 O -0.582 6.582 5 C 0.060 3.940 6 C -0.163 4.163 7 C -0.132 4.132 8 N -0.472 5.472 9 C 0.005 3.995 10 C 0.105 3.895 11 C -0.005 4.005 12 C 0.063 3.937 13 O -0.372 6.372 14 C 0.062 3.938 15 C 0.468 3.532 16 O -0.590 6.590 17 N -0.574 5.574 18 C 0.140 3.860 19 C 0.039 3.961 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.008 3.992 23 N -0.928 5.928 24 Si 0.953 3.047 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.289 1.289 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.416 0.584 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.151 0.849 44 H 0.133 0.867 45 H 0.119 0.881 46 H 0.036 0.964 47 H 0.094 0.906 48 H 0.030 0.970 49 H -0.044 1.044 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 17.344 9.155 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.316 3.684 4 O -0.462 6.462 5 C -0.033 4.033 6 C -0.221 4.221 7 C -0.189 4.189 8 N -0.196 5.196 9 C -0.124 4.124 10 C 0.018 3.982 11 C -0.133 4.133 12 C -0.014 4.014 13 O -0.290 6.290 14 C -0.018 4.018 15 C 0.258 3.742 16 O -0.471 6.471 17 N -0.304 5.304 18 C 0.019 3.981 19 C 0.001 3.999 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.190 4.190 23 N -0.568 5.568 24 Si 0.779 3.221 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.215 1.215 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.252 0.748 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.144 0.856 42 H 0.109 0.891 43 H 0.168 0.832 44 H 0.151 0.849 45 H 0.136 0.864 46 H 0.054 0.946 47 H 0.112 0.888 48 H 0.048 0.952 49 H -0.026 1.026 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.681 16.924 8.712 19.047 hybrid contribution -0.389 -1.284 -0.716 1.521 sum -1.070 15.639 7.997 17.598 Atomic orbital electron populations 1.21636 0.79303 1.03420 1.01632 1.46000 1.08202 1.09638 1.73143 1.20605 0.90010 0.83166 0.74658 1.90646 1.70794 1.32408 1.52344 1.21694 0.90877 0.93348 0.97398 1.22317 1.02519 0.95297 1.01963 1.21733 1.02438 1.01946 0.92833 1.68942 1.10443 1.35148 1.05059 1.24535 0.89634 1.02834 0.95381 1.22463 0.98073 0.80791 0.96882 1.24630 0.96034 1.02597 0.90061 1.23308 0.82773 0.95966 0.99396 1.88153 1.31372 1.28685 1.80777 1.22757 0.97269 0.83698 0.98054 1.22031 0.84411 0.88703 0.79104 1.90736 1.76577 1.17069 1.62738 1.47495 1.25898 1.07775 1.49192 1.21405 0.89205 0.92912 0.94617 1.19103 0.93440 0.94923 0.92411 1.21505 1.05486 1.26061 1.03387 0.92539 1.25761 0.97482 0.98402 0.97334 1.70106 1.28528 1.44749 1.13454 0.85583 0.79595 0.78483 0.78456 1.18489 1.20271 1.21533 0.92896 0.88982 0.92225 0.74830 0.88701 0.91151 0.90921 0.93560 0.91123 0.90195 0.86096 0.91683 0.89326 0.85645 0.89090 0.83187 0.84912 0.86391 0.94587 0.88783 0.95222 1.02609 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 10.70 127.77 1.37 3.34 16 2 N -0.72 -20.01 5.61 -484.54 -2.72 -22.73 16 3 C 0.53 14.99 6.36 87.66 0.56 15.55 16 4 O -0.58 -19.20 16.27 -3.07 -0.05 -19.25 16 5 C 0.06 1.40 0.65 2.78 0.00 1.41 16 6 C -0.16 -2.76 6.74 71.98 0.49 -2.27 16 7 C -0.13 -3.29 8.39 71.98 0.60 -2.69 16 8 N -0.47 -11.87 3.43 -868.81 -2.98 -14.84 16 9 C 0.01 0.12 5.11 86.25 0.44 0.57 16 10 C 0.11 2.39 1.56 5.17 0.01 2.39 16 11 C 0.00 -0.09 6.01 86.24 0.52 0.43 16 12 C 0.06 0.92 6.09 71.91 0.44 1.36 16 13 O -0.37 -7.63 10.84 -148.98 -1.62 -9.24 16 14 C 0.06 1.41 6.94 71.10 0.49 1.91 16 15 C 0.47 16.47 7.63 87.60 0.67 17.14 16 16 O -0.59 -27.22 16.51 -3.04 -0.05 -27.27 16 17 N -0.57 -19.10 2.66 -785.52 -2.09 -21.19 16 18 C 0.14 5.78 4.45 86.38 0.38 6.17 16 19 C 0.04 2.02 4.97 29.85 0.15 2.17 16 20 C -0.53 -29.29 9.11 25.60 0.23 -29.06 16 21 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 22 C 0.01 0.46 5.46 84.65 0.46 0.92 16 23 N -0.93 -56.14 13.29 21.44 0.28 -55.86 16 24 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.42 12.68 8.19 -92.71 -0.76 11.92 16 32 H 0.09 1.10 5.63 -2.39 -0.01 1.09 16 33 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 34 H 0.07 1.16 6.27 -2.39 -0.01 1.14 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.80 7.21 -2.39 -0.02 1.79 16 38 H 0.12 2.00 5.26 -2.39 -0.01 1.98 16 39 H 0.06 2.21 6.86 -2.39 -0.02 2.20 16 40 H 0.09 1.99 6.95 -2.39 -0.02 1.97 16 41 H 0.13 1.71 5.09 -2.38 -0.01 1.70 16 42 H 0.09 0.97 8.13 -2.39 -0.02 0.95 16 43 H 0.15 1.15 7.86 -2.39 -0.02 1.13 16 44 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.04 1.67 7.41 -2.38 -0.02 1.65 16 47 H 0.09 3.45 5.51 -2.39 -0.01 3.44 16 48 H 0.03 1.55 5.76 -2.38 -0.01 1.54 16 49 H -0.04 -2.79 8.14 -2.39 -0.02 -2.81 16 50 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -79.65 385.05 -0.17 -79.82 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.21 Total: 24.91 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.81 Total: 19.33 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -7.50 Total: -114.62 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -1.72 Total: -55.76 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -79.65 -0.17 -79.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.444 kcal (2) G-P(sol) polarization free energy of solvation -79.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds