Wall clock time and date at job start Tue Mar 31 2020 23:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34773 * 119.99874 * 2 1 4 4 O 1.21278 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47091 * 205.00370 * 5 3 2 7 7 C 1.52999 * 109.46951 * 85.00182 * 5 3 2 8 8 N 1.46910 * 109.47054 * 325.00238 * 5 3 2 9 9 C 1.48060 * 110.99971 * 298.29024 * 8 5 3 10 10 C 1.53388 * 86.02311 * 222.76988 * 9 8 5 11 11 C 1.48060 * 110.99708 * 198.83507 * 8 5 3 12 12 C 1.52550 * 113.83842 * 138.14650 * 10 9 8 13 13 N 1.46273 * 109.57226 * 176.49506 * 12 10 9 14 14 C 1.46500 * 118.71691 * 163.90678 * 13 12 10 15 15 C 1.52995 * 109.46878 * 90.00331 * 14 13 12 16 16 C 1.50709 * 109.46849 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99800 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00266 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46799 * 59.99887 * 20 18 16 22 22 H 1.48492 * 109.46977 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47010 * 299.99866 * 20 18 16 24 24 C 1.33724 * 122.56587 * 344.19528 * 13 12 10 25 25 O 1.21287 * 118.37877 * 182.95216 * 24 13 12 26 26 C 1.50141 * 123.25260 * 2.71697 * 24 13 12 27 27 O 1.42694 * 113.78190 * 268.80147 * 10 9 8 28 28 H 1.08998 * 109.46665 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.46675 * 60.00025 * 1 2 3 30 30 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99381 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47177 * 189.18019 * 6 5 3 33 33 H 1.08998 * 109.47414 * 309.17193 * 6 5 3 34 34 H 1.08999 * 109.47436 * 69.17971 * 6 5 3 35 35 H 1.08997 * 109.47069 * 296.10552 * 7 5 3 36 36 H 1.08999 * 109.47256 * 56.10833 * 7 5 3 37 37 H 1.09002 * 109.47140 * 176.10798 * 7 5 3 38 38 H 1.08989 * 113.78631 * 108.48689 * 9 8 5 39 39 H 1.09003 * 113.78280 * 337.03781 * 9 8 5 40 40 H 1.08997 * 113.78575 * 22.95469 * 11 8 5 41 41 H 1.09000 * 113.78229 * 251.50938 * 11 8 5 42 42 H 1.09004 * 109.45334 * 56.47007 * 12 10 9 43 43 H 1.09000 * 109.43937 * 296.51575 * 12 10 9 44 44 H 1.09001 * 109.46771 * 210.00432 * 14 13 12 45 45 H 1.09004 * 109.46969 * 330.00147 * 14 13 12 46 46 H 1.09001 * 109.47502 * 299.99654 * 15 14 13 47 47 H 1.08999 * 109.47019 * 60.00197 * 15 14 13 48 48 H 0.97000 * 120.00015 * 179.97438 * 19 18 16 49 49 H 1.09007 * 109.48141 * 222.46212 * 26 24 13 50 50 H 1.08998 * 109.04328 * 102.86734 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1672 0.0006 6 6 4.1557 2.4746 0.6102 7 6 4.1565 1.0412 -1.4362 8 7 4.1353 0.0327 0.7954 9 6 3.6940 0.1425 2.2045 10 6 5.1176 -0.2942 2.5726 11 6 5.5455 0.2362 1.1983 12 6 5.7158 0.4780 3.7443 13 7 7.0340 -0.0667 4.0683 14 6 7.9371 0.7266 4.9058 15 6 7.7041 0.3799 6.3776 16 6 8.6335 1.1956 7.2390 17 1 9.3218 1.8913 6.7823 18 6 8.6058 1.0529 8.6101 19 7 7.7679 0.2053 9.1662 20 14 9.7573 2.0644 9.6779 21 1 9.4911 3.5093 9.4621 22 1 9.5312 1.7279 11.1064 23 1 11.1646 1.7606 9.3140 24 6 7.4492 -1.2582 3.6253 25 8 8.5356 -1.6603 3.9847 26 6 6.6350 -2.1252 2.7091 27 8 5.2675 -1.7059 2.7162 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 5.2334 2.5478 0.4638 33 1 3.6651 3.3178 0.1240 34 1 3.9321 2.4896 1.6769 35 1 3.8514 0.0788 -1.8471 36 1 3.7376 1.8444 -2.0424 37 1 5.2443 1.1106 -1.4427 38 1 2.9268 -0.5801 2.4824 39 1 3.4532 1.1602 2.5117 40 1 5.8537 1.2817 1.2070 41 1 6.2496 -0.4120 0.6766 42 1 5.0618 0.3858 4.6115 43 1 5.8139 1.5293 3.4737 44 1 8.9701 0.5032 4.6389 45 1 7.7420 1.7872 4.7469 46 1 6.6711 0.6033 6.6444 47 1 7.8992 -0.6807 6.5363 48 1 7.7487 0.1047 10.1307 49 1 6.6965 -3.1621 3.0398 50 1 7.0322 -2.0448 1.6972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273839416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:43 Heat of formation + Delta-G solvation = -55.129073 kcal Electronic energy + Delta-G solvation = -31351.161119 eV Core-core repulsion = 27187.693852 eV Total energy + Delta-G solvation = -4163.467267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02853 -40.25653 -39.03548 -36.99976 -35.49609 -34.92316 -33.81489 -33.03184 -30.30615 -29.06806 -28.13460 -27.75370 -27.24850 -26.30016 -25.03159 -24.55682 -22.64484 -21.63757 -20.37526 -19.57768 -18.77500 -17.56239 -17.43209 -16.89598 -16.43429 -16.12368 -15.91556 -15.80111 -15.48202 -15.16826 -14.74654 -14.53259 -14.35443 -14.34348 -14.14015 -13.63292 -13.53630 -13.16080 -13.04049 -12.66209 -12.63563 -12.60091 -12.49620 -12.47103 -12.22237 -12.01035 -11.92593 -11.58273 -11.45270 -11.34262 -11.03673 -10.89707 -10.70271 -10.26798 -10.04894 -9.91948 -9.85693 -9.42786 -9.38514 -9.26300 -8.99042 -8.36765 -8.15670 -6.01862 -4.05411 2.26511 2.84068 2.88317 3.07267 3.27112 3.32694 3.37178 3.39573 3.42632 4.02371 4.09384 4.25943 4.44594 4.52099 4.56984 4.59106 4.76847 4.82744 4.91921 5.01699 5.09925 5.16267 5.19794 5.25872 5.29462 5.32336 5.34139 5.36519 5.40769 5.44615 5.46026 5.53006 5.65367 5.72646 5.82630 5.87322 6.02161 6.08936 6.39039 6.45430 6.63179 6.79734 6.85072 7.18685 7.56184 7.68383 7.88733 7.90359 7.97760 8.32725 8.47078 9.00860 9.58446 11.09546 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.002642 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.374223 B =10596.357053 C =11121.255425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.528 3.472 4 O -0.540 6.540 5 C 0.053 3.947 6 C -0.177 4.177 7 C -0.130 4.130 8 N -0.458 5.458 9 C 0.015 3.985 10 C 0.076 3.924 11 C -0.024 4.024 12 C 0.099 3.901 13 N -0.596 5.596 14 C 0.113 3.887 15 C 0.015 3.985 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.479 3.521 25 O -0.537 6.537 26 C 0.052 3.948 27 O -0.335 6.335 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.412 0.588 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.130 0.870 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 -0.948 -22.840 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.375 5.375 3 C 0.313 3.687 4 O -0.416 6.416 5 C -0.040 4.040 6 C -0.235 4.235 7 C -0.188 4.188 8 N -0.182 5.182 9 C -0.113 4.113 10 C 0.035 3.965 11 C -0.153 4.153 12 C -0.025 4.025 13 N -0.328 5.328 14 C -0.007 4.007 15 C -0.023 4.023 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.265 3.735 25 O -0.415 6.415 26 C -0.027 4.027 27 O -0.253 6.253 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.247 0.753 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.033 0.967 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.148 0.852 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.178 -1.169 -22.887 26.435 hybrid contribution 1.062 0.993 1.128 1.840 sum -12.115 -0.175 -21.759 24.905 Atomic orbital electron populations 1.21564 0.79750 1.02331 1.02233 1.45815 1.07538 1.09313 1.74874 1.20282 0.89139 0.83723 0.75559 1.90713 1.69848 1.31498 1.49552 1.21775 0.91934 0.92593 0.97714 1.22427 1.01860 0.97255 1.01986 1.21700 1.01883 1.02886 0.92287 1.68881 1.04937 1.35704 1.08693 1.24145 0.96203 1.02358 0.88619 1.22822 0.96980 0.83395 0.93301 1.24803 0.92246 1.02812 0.95416 1.21960 0.85154 0.97763 0.97624 1.47670 1.15939 1.18708 1.50508 1.21966 0.92985 0.92747 0.93004 1.19338 0.97033 0.97864 0.88030 1.21040 1.20512 1.23169 0.91365 0.92605 1.24997 0.95683 0.95426 0.98147 1.69960 1.36700 1.35646 1.10854 0.86619 0.81386 0.80451 0.79315 1.20219 1.21258 1.20141 1.20677 0.87912 0.82437 0.82457 1.90771 1.22566 1.70725 1.57453 1.22796 0.81031 0.99785 0.99070 1.88102 1.24282 1.19283 1.93601 0.92188 0.92350 0.90551 0.75291 0.90738 0.90031 0.91375 0.91263 0.91516 0.91198 0.87485 0.88644 0.88319 0.88323 0.90030 0.89764 0.90598 0.91815 0.96703 0.95916 0.92874 0.85242 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.72 -5.48 5.46 -67.07 -0.37 -5.85 16 3 C 0.53 5.18 5.87 -10.98 -0.06 5.12 16 4 O -0.54 -7.21 15.90 5.56 0.09 -7.12 16 5 C 0.05 0.43 0.65 -132.75 -0.09 0.34 16 6 C -0.18 -1.44 7.02 37.15 0.26 -1.18 16 7 C -0.13 -0.89 8.57 37.16 0.32 -0.57 16 8 N -0.46 -3.67 5.23 -226.58 -1.18 -4.86 16 9 C 0.02 0.14 6.23 -2.99 -0.02 0.12 16 10 C 0.08 0.81 1.16 -90.52 -0.10 0.71 16 11 C -0.02 -0.21 6.45 -2.98 -0.02 -0.23 16 12 C 0.10 1.29 5.88 -4.40 -0.03 1.27 16 13 N -0.60 -10.25 2.84 -174.68 -0.50 -10.74 16 14 C 0.11 2.35 5.21 -4.04 -0.02 2.33 16 15 C 0.02 0.40 5.29 -27.88 -0.15 0.25 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.48 8.43 7.57 -11.72 -0.09 8.34 16 25 O -0.54 -11.88 16.33 5.55 0.09 -11.79 16 26 C 0.05 0.66 6.65 35.74 0.24 0.90 16 27 O -0.33 -4.14 10.66 -35.23 -0.38 -4.51 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.41 2.62 8.19 -40.82 -0.33 2.28 16 32 H 0.07 0.51 6.24 -51.93 -0.32 0.19 16 33 H 0.08 0.75 7.52 -51.93 -0.39 0.36 16 34 H 0.07 0.57 5.73 -51.93 -0.30 0.27 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.43 7.93 -51.93 -0.41 0.02 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 0.81 5.67 -51.93 -0.29 0.52 16 40 H 0.10 0.77 4.84 -51.93 -0.25 0.52 16 41 H 0.10 0.83 7.01 -51.93 -0.36 0.47 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 44 H 0.08 1.68 7.28 -51.93 -0.38 1.31 16 45 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 49 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 50 H 0.09 0.87 7.15 -51.93 -0.37 0.50 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -35.84 393.16 -8.14 -43.97 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.00 Total: -0.39 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 0.47 Total: 5.05 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -1.31 Total: -47.88 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.20 Total: -23.42 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.84 -8.14 -43.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.158 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds