Wall clock time and date at job start Tue Mar 31 2020 23:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34773 * 119.99874 * 2 1 4 4 O 1.21278 * 120.00274 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99842 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47091 * 205.00370 * 5 3 2 7 7 C 1.52999 * 109.46951 * 85.00182 * 5 3 2 8 8 N 1.46910 * 109.47054 * 325.00238 * 5 3 2 9 9 C 1.48060 * 110.99971 * 298.29024 * 8 5 3 10 10 C 1.53388 * 86.02311 * 222.76988 * 9 8 5 11 11 C 1.48060 * 110.99708 * 198.83507 * 8 5 3 12 12 C 1.52550 * 113.83842 * 138.14650 * 10 9 8 13 13 N 1.46273 * 109.57226 * 176.49506 * 12 10 9 14 14 C 1.46500 * 118.71691 * 163.90678 * 13 12 10 15 15 C 1.52995 * 109.46878 * 90.00331 * 14 13 12 16 16 C 1.50709 * 109.46849 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99800 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99723 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00266 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46799 * 59.99887 * 20 18 16 22 22 H 1.48492 * 109.46977 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47010 * 299.99866 * 20 18 16 24 24 C 1.33724 * 122.56587 * 344.19528 * 13 12 10 25 25 O 1.21287 * 118.37877 * 182.95216 * 24 13 12 26 26 C 1.50141 * 123.25260 * 2.71697 * 24 13 12 27 27 O 1.42694 * 113.78190 * 268.80147 * 10 9 8 28 28 H 1.08998 * 109.46665 * 299.99984 * 1 2 3 29 29 H 1.08999 * 109.46675 * 60.00025 * 1 2 3 30 30 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99381 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47177 * 189.18019 * 6 5 3 33 33 H 1.08998 * 109.47414 * 309.17193 * 6 5 3 34 34 H 1.08999 * 109.47436 * 69.17971 * 6 5 3 35 35 H 1.08997 * 109.47069 * 296.10552 * 7 5 3 36 36 H 1.08999 * 109.47256 * 56.10833 * 7 5 3 37 37 H 1.09002 * 109.47140 * 176.10798 * 7 5 3 38 38 H 1.08989 * 113.78631 * 108.48689 * 9 8 5 39 39 H 1.09003 * 113.78280 * 337.03781 * 9 8 5 40 40 H 1.08997 * 113.78575 * 22.95469 * 11 8 5 41 41 H 1.09000 * 113.78229 * 251.50938 * 11 8 5 42 42 H 1.09004 * 109.45334 * 56.47007 * 12 10 9 43 43 H 1.09000 * 109.43937 * 296.51575 * 12 10 9 44 44 H 1.09001 * 109.46771 * 210.00432 * 14 13 12 45 45 H 1.09004 * 109.46969 * 330.00147 * 14 13 12 46 46 H 1.09001 * 109.47502 * 299.99654 * 15 14 13 47 47 H 1.08999 * 109.47019 * 60.00197 * 15 14 13 48 48 H 0.97000 * 120.00015 * 179.97438 * 19 18 16 49 49 H 1.09007 * 109.48141 * 222.46212 * 26 24 13 50 50 H 1.08998 * 109.04328 * 102.86734 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1672 0.0006 6 6 4.1557 2.4746 0.6102 7 6 4.1565 1.0412 -1.4362 8 7 4.1353 0.0327 0.7954 9 6 3.6940 0.1425 2.2045 10 6 5.1176 -0.2942 2.5726 11 6 5.5455 0.2362 1.1983 12 6 5.7158 0.4780 3.7443 13 7 7.0340 -0.0667 4.0683 14 6 7.9371 0.7266 4.9058 15 6 7.7041 0.3799 6.3776 16 6 8.6335 1.1956 7.2390 17 1 9.3218 1.8913 6.7823 18 6 8.6058 1.0529 8.6101 19 7 7.7679 0.2053 9.1662 20 14 9.7573 2.0644 9.6779 21 1 9.4911 3.5093 9.4621 22 1 9.5312 1.7279 11.1064 23 1 11.1646 1.7606 9.3140 24 6 7.4492 -1.2582 3.6253 25 8 8.5356 -1.6603 3.9847 26 6 6.6350 -2.1252 2.7091 27 8 5.2675 -1.7059 2.7162 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 5.2334 2.5478 0.4638 33 1 3.6651 3.3178 0.1240 34 1 3.9321 2.4896 1.6769 35 1 3.8514 0.0788 -1.8471 36 1 3.7376 1.8444 -2.0424 37 1 5.2443 1.1106 -1.4427 38 1 2.9268 -0.5801 2.4824 39 1 3.4532 1.1602 2.5117 40 1 5.8537 1.2817 1.2070 41 1 6.2496 -0.4120 0.6766 42 1 5.0618 0.3858 4.6115 43 1 5.8139 1.5293 3.4737 44 1 8.9701 0.5032 4.6389 45 1 7.7420 1.7872 4.7469 46 1 6.6711 0.6033 6.6444 47 1 7.8992 -0.6807 6.5363 48 1 7.7487 0.1047 10.1307 49 1 6.6965 -3.1621 3.0398 50 1 7.0322 -2.0448 1.6972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273839416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:42 Heat of formation + Delta-G solvation = -84.285983 kcal Electronic energy + Delta-G solvation = -31352.425457 eV Core-core repulsion = 27187.693852 eV Total energy + Delta-G solvation = -4164.731606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85142 -41.31677 -40.06270 -38.00495 -37.00476 -35.61058 -35.15583 -34.51881 -32.11374 -30.10117 -28.94467 -28.49783 -28.28433 -27.00071 -26.37795 -25.89074 -23.65289 -23.10974 -21.52880 -20.32350 -19.82000 -18.74720 -18.57538 -18.32344 -17.53402 -17.23291 -16.93432 -16.80352 -16.52144 -16.41227 -15.93802 -15.75594 -15.21904 -15.19840 -15.01445 -14.90112 -14.59242 -14.35759 -14.27846 -14.10805 -13.80499 -13.41127 -13.31373 -13.21851 -13.20009 -13.07084 -12.84682 -12.79690 -12.62719 -12.60375 -12.38683 -12.16374 -12.02401 -11.90579 -11.68948 -11.48738 -11.17503 -10.82112 -10.59749 -10.40799 -10.09782 -9.94127 -9.66169 -8.23757 -6.36594 1.38240 1.42609 1.47630 1.50584 1.53214 1.85542 2.26699 2.35784 2.40390 2.64594 3.09753 3.17986 3.24602 3.52232 3.59173 3.84234 3.92123 3.98932 4.10955 4.14218 4.22631 4.32167 4.37257 4.47557 4.51281 4.57392 4.60194 4.62991 4.64595 4.67185 4.73839 4.74702 4.83265 4.89835 4.91865 4.94746 5.05296 5.14801 5.21213 5.28954 5.42735 5.46376 5.55627 5.70308 5.77799 5.83721 6.14940 6.43769 6.55600 6.78969 7.07431 7.22975 7.33166 8.88324 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.002642 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.374223 B =10596.357053 C =11121.255425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.523 3.477 4 O -0.582 6.582 5 C 0.057 3.943 6 C -0.178 4.178 7 C -0.127 4.127 8 N -0.448 5.448 9 C 0.020 3.980 10 C 0.072 3.928 11 C -0.017 4.017 12 C 0.094 3.906 13 N -0.597 5.597 14 C 0.128 3.872 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.067 0.933 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.470 3.530 25 O -0.592 6.592 26 C 0.065 3.935 27 O -0.340 6.340 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.419 0.581 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.059 0.941 45 H 0.091 0.909 46 H -0.004 1.004 47 H -0.027 1.027 48 H 0.264 0.736 49 H 0.139 0.861 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 -0.320 -24.494 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.309 3.691 4 O -0.461 6.461 5 C -0.036 4.036 6 C -0.236 4.236 7 C -0.185 4.185 8 N -0.172 5.172 9 C -0.109 4.109 10 C 0.031 3.969 11 C -0.145 4.145 12 C -0.029 4.029 13 N -0.328 5.328 14 C 0.006 3.994 15 C -0.012 4.012 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.194 1.194 24 C 0.259 3.741 25 O -0.474 6.474 26 C -0.014 4.014 27 O -0.258 6.258 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.256 0.744 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.014 0.986 47 H -0.009 1.009 48 H 0.073 0.927 49 H 0.156 0.844 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.148 -0.558 -24.577 27.879 hybrid contribution 0.959 0.759 1.655 2.058 sum -12.189 0.201 -22.923 25.963 Atomic orbital electron populations 1.21678 0.79044 1.04051 1.01413 1.45834 1.08141 1.09086 1.73489 1.20617 0.89920 0.83597 0.74970 1.90697 1.70746 1.32951 1.51703 1.21758 0.90793 0.92473 0.98528 1.22437 1.02745 0.96821 1.01585 1.21703 1.02580 1.03088 0.91138 1.68911 1.04699 1.35534 1.08045 1.24158 0.95111 1.02613 0.88995 1.22931 0.98304 0.82341 0.93303 1.24841 0.92537 1.03615 0.93497 1.22257 0.82722 0.99648 0.98314 1.47701 1.16933 1.18640 1.49504 1.21516 0.93155 0.94645 0.90047 1.19143 0.95532 0.94538 0.91948 1.21527 1.20971 1.23516 0.92201 0.91494 1.26030 0.97388 0.96594 0.99862 1.70112 1.38585 1.37388 1.11296 0.85433 0.78913 0.79296 0.77009 1.18385 1.20919 1.19430 1.21703 0.87711 0.82400 0.82330 1.90741 1.25155 1.71860 1.59604 1.22782 0.80570 0.98744 0.99293 1.88108 1.23738 1.20317 1.93653 0.93263 0.92938 0.87578 0.74362 0.89083 0.91324 0.91741 0.90691 0.91888 0.89964 0.87277 0.88210 0.87110 0.87326 0.91590 0.87181 0.92275 0.89058 0.98600 1.00872 0.92732 0.84388 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.70 127.77 1.37 2.30 16 2 N -0.71 -9.58 5.46 -484.51 -2.65 -12.23 16 3 C 0.52 9.57 5.87 87.66 0.51 10.09 16 4 O -0.58 -15.33 15.90 -3.02 -0.05 -15.38 16 5 C 0.06 0.80 0.65 2.78 0.00 0.80 16 6 C -0.18 -2.54 7.02 71.98 0.51 -2.03 16 7 C -0.13 -1.40 8.57 71.98 0.62 -0.78 16 8 N -0.45 -5.89 5.23 -875.04 -4.58 -10.47 16 9 C 0.02 0.31 6.23 86.21 0.54 0.84 16 10 C 0.07 1.38 1.16 -10.65 -0.01 1.36 16 11 C -0.02 -0.23 6.45 86.21 0.56 0.32 16 12 C 0.09 2.32 5.88 86.27 0.51 2.83 16 13 N -0.60 -20.42 2.84 -825.55 -2.34 -22.76 16 14 C 0.13 5.38 5.21 86.38 0.45 5.83 16 15 C 0.03 1.44 5.29 29.85 0.16 1.60 16 16 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 19 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.47 16.50 7.57 87.65 0.66 17.17 16 25 O -0.59 -26.93 16.33 -3.05 -0.05 -26.98 16 26 C 0.06 1.53 6.65 71.06 0.47 2.00 16 27 O -0.34 -7.68 10.66 -148.98 -1.59 -9.27 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.42 4.30 8.19 -92.70 -0.76 3.54 16 32 H 0.09 0.97 6.24 -2.38 -0.01 0.96 16 33 H 0.07 1.19 7.52 -2.39 -0.02 1.17 16 34 H 0.06 0.96 5.73 -2.39 -0.01 0.95 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.72 7.93 -2.39 -0.02 0.70 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.51 5.67 -2.39 -0.01 1.49 16 40 H 0.11 1.30 4.84 -2.39 -0.01 1.29 16 41 H 0.11 1.37 7.01 -2.39 -0.02 1.36 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.11 2.15 7.77 -2.39 -0.02 2.13 16 44 H 0.06 2.68 7.28 -2.39 -0.02 2.66 16 45 H 0.09 3.29 7.96 -2.38 -0.02 3.27 16 46 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 48 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.14 3.05 8.14 -2.38 -0.02 3.03 16 50 H 0.12 2.04 7.15 -2.39 -0.02 2.02 16 Total: -1.00 -81.39 393.16 -1.71 -83.10 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.19 Total: 13.70 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.04 Total: 11.59 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -9.28 Total: -103.51 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -1.69 Total: -51.63 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -81.39 -1.71 -83.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273839416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.187 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds